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Aliases for ENSG00000229820 Gene

Subcategory (RNA class) for ENSG00000229820 Gene

lncRNA

Aliases for ENSG00000229820 Gene

  • CR391992.1 5

External Ids for ENSG00000229820 Gene

ORGUL Members for ENSG00000229820 Gene

Previous GeneCards Identifiers for ENSG00000229820 Gene

  • GC01P028781

Summaries for ENSG00000229820 Gene

GeneCards Summary for ENSG00000229820 Gene

ENSG00000229820 is an Uncategorized gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for ENSG00000229820 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for ENSG00000229820

Additional gene information for ENSG00000229820 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000229820 Gene

Genomics for ENSG00000229820 Gene

Regulatory Elements for ENSG00000229820 Gene

Enhancers for ENSG00000229820 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H028448 1.1 Ensembl ENCODE 0.7 -2.9 -2928 3 PKNOX1 ATF1 RFX5 TCF12 ZNF766 EGR1 SCRT2 ATF7 RUNX3 CREM PHACTR4 TRNAU1AP ENSG00000229820 ENSG00000206779
GH01H028455 0.7 Ensembl ENCODE 0.7 +2.6 2623 1 JUN MAX USF2 PHACTR4 TRNAU1AP ENSG00000229820 RNU6ATAC27P
GH01H028436 1 ENCODE 0.4 -15.3 -15317 3 HDGF PKNOX1 FOXA2 ARID4B SIN3A YY1 SLC30A9 GLIS2 FOS DEK PHACTR4 SRSF4 GMEB1 SNHG12 TRNAU1AP YTHDF2 ENSG00000231344 ENSG00000237934 SNORA73B RCC1
GH01H028425 1.1 FANTOM5 Ensembl ENCODE 0.3 -27.7 -27701 0 PKNOX1 IKZF1 MLLT1 PHACTR4 TRNAU1AP RCC1 SNHG3 SNORA73B PRDX3P2 GMEB1 PTAFR MED18 SESN2
GH01H028471 0.8 ENCODE 0.4 +18.1 18121 0 HDGF CTCF GTF2E2 BACH1 RAD21 CC2D1A ZNF316 NCOR1 FOXK2 SMC3 PHACTR4 TRNAU1AP RCC1 SNHG3 SNORA73B PRDX3P2 SNORA61 SNORD99 RNU6ATAC27P ENSG00000229820
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ENSG00000229820 on UCSC Golden Path with GeneCards custom track

Genomic Location for ENSG00000229820 Gene

Chromosome:
1
Start:
28,453,541 bp from pter
End:
28,453,934 bp from pter
Size:
394 bases
Orientation:
Plus strand

Genomic View for ENSG00000229820 Gene

Genes around ENSG00000229820 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000229820 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000229820 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000229820 Gene

ORGUL Member Location for ENSG00000229820 gene

No data available for RefSeq DNA sequence for ENSG00000229820 Gene

Proteins for ENSG00000229820 Gene

Post-translational modifications for ENSG00000229820 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000229820 Gene

Domains & Families for ENSG00000229820 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000229820 Gene

Function for ENSG00000229820 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000229820 Gene

Localization for ENSG00000229820 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000229820 Gene

Pathways & Interactions for ENSG00000229820 Gene

SuperPathways for ENSG00000229820 Gene

No Data Available

Interacting Proteins for ENSG00000229820 Gene

Gene Ontology (GO) - Biological Process for ENSG00000229820 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000229820 Gene

Drugs & Compounds for ENSG00000229820 Gene

No Compound Related Data Available

Transcripts for ENSG00000229820 Gene

fRNAdb Secondary structures for ENSG00000229820 Gene

  • FR277208

mRNA/cDNA for ENSG00000229820 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000229820 Gene

No ASD Table

Relevant External Links for ENSG00000229820 Gene

GeneLoc Exon Structure for
ENSG00000229820

Expression for ENSG00000229820 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000229820 Gene

genes like me logo Genes that share expression patterns with ENSG00000229820: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000229820 Gene

Orthologs for ENSG00000229820 Gene

Evolution for ENSG00000229820 Gene

ENSEMBL:
Gene Tree for ENSG00000229820 (if available)
TreeFam:
Gene Tree for ENSG00000229820 (if available)

No data available for Orthologs for ENSG00000229820 Gene

Paralogs for ENSG00000229820 Gene

No data available for Paralogs for ENSG00000229820 Gene

Variants for ENSG00000229820 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for ENSG00000229820 Gene

Disorders for ENSG00000229820 Gene

No disorders were found for ENSG00000229820 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000229820 Gene

Publications for ENSG00000229820 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for ENSG00000229820 Gene

Sources for ENSG00000229820 Gene

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