Aliases for ENSG00000228539 Gene
Quality Score for this RNA gene is
1
Aliases for ENSG00000228539 Gene
- RP11-526K17.2 5
External Ids for ENSG00000228539 Gene
- Ensembl: ENSG00000228539
Summaries for ENSG00000228539 Gene
GeneCards Summary for ENSG00000228539 Gene
ENSG00000228539 is an RNA Gene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000228539 Gene
Genomics for ENSG00000228539 Gene
Regulatory Elements for ENSG00000228539 Gene
Enhancers for ENSG00000228539 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH20G024501 | 1.3 | FANTOM5 Ensembl ENCODE dbSUPER | 0.7 | -0.6 | -555 | 2.2 | RAD51 SMARCA4 SCRT2 FOS ZBTB33 MAFK | SYNDIG1 ENSG00000228539 GC20M024591 |
| GH20G024497 | 1 | ENCODE dbSUPER | 0.7 | +4.3 | 4326 | 0.2 | PKNOX1 NFIA NFIB SIN3A MNT ZIC2 FOXA1 RAD51 PRDM6 GATA3 | ENSG00000228539 LOC105372585 |
| GH20G024492 | 0.9 | ENCODE dbSUPER | 0.4 | +9.8 | 9776 | 1.0 | CTCF NFIC SMARCA4 GLIS1 HLF MAFG NFE2 MAFK | ENSG00000228539 LOC105372585 |
| GH20G024488 | 0.8 | dbSUPER | 0.4 | +13.2 | 13170 | 2.3 | ZSCAN4 ZNF76 ZNF335 GLIS2 ZNF207 ZEB2 ZFP69B RAD51 ZNF610 GLIS1 | LOC105372585 ENSG00000228539 |
| GH20G024499 | 0.4 | dbSUPER | 0.7 | +2.3 | 2304 | 1.3 | ZNF366 HLF | ENSG00000228539 LOC105372585 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around ENSG00000228539 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for ENSG00000228539 Gene
- Chromosome:
- 20
- Start:
- 24,491,472 bp from pter
- End:
- 24,502,345 bp from pter
- Size:
- 10,874 bases
- Orientation:
- Minus strand
Genomic View for ENSG00000228539 Gene
Genes around ENSG00000228539 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 20p11.21 by Ensembl
ENSG00000228539 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for ENSG00000228539 Gene
Proteins for ENSG00000228539 Gene
Post-translational modifications for ENSG00000228539 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for ENSG00000228539
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000228539
- Origene Custom Protein Services for ENSG00000228539
- Search GeneTex for Proteins for ENSG00000228539
Assay Products
No data available for DME Specific Peptides for ENSG00000228539 Gene
Domains & Families for ENSG00000228539 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000228539 Gene
Function for ENSG00000228539 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for ENSG00000228539
CRISPR Products
- Browse CRISPR knockouts for ENSG00000228539
miRNA Products
- Search ViGene Biosciences for ENSG00000228539
Inhibitory RNA Products
- Search ViGene Biosciences for ENSG00000228539
Cell Line Products
- Search ViGene Biosciences for ENSG00000228539
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228539 Gene
Localization for ENSG00000228539 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ENSG00000228539 Gene
Transcripts for ENSG00000228539 Gene
mRNA/cDNA for ENSG00000228539 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for ENSG00000228539
miRNA Products
- Search ViGene Biosciences for ENSG00000228539
Inhibitory RNA Products
- Search ViGene Biosciences for ENSG00000228539
Flow Cytometry Products
Relevant External Links for ENSG00000228539 Gene
- GeneLoc Exon Structure for
- ENSG00000228539
Expression for ENSG00000228539 Gene
mRNA differential expression in normal tissues according to GTEx for ENSG00000228539 Gene
This gene is overexpressed in Brain - Cerebellum (x9.8), Brain - Cerebellar Hemisphere (x7.3), and Brain - Cortex (x4.1).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228539 Gene
Orthologs for ENSG00000228539 Gene
Evolution for ENSG00000228539 Gene
- ENSEMBL:
- Gene Tree for ENSG00000228539 (if available)
- TreeFam:
- Gene Tree for ENSG00000228539 (if available)
No data available for Orthologs for ENSG00000228539 Gene
Paralogs for ENSG00000228539 Gene
No data available for Paralogs for ENSG00000228539 Gene
Variants for ENSG00000228539 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for ENSG00000228539 Gene
Disorders for ENSG00000228539 Gene
No disorders were found for ENSG00000228539 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228539 Gene
Publications for ENSG00000228539 Gene
No publications were found for ENSG00000228539 Gene.
Products for ENSG00000228539 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000228539
- Origene Custom Protein Services for ENSG00000228539
- Browse OriGene Inhibitory RNA Products For ENSG00000228539
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for ENSG00000228539
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For ENSG00000228539
- GenScript: Custom all cDNA clones Services for ENSG00000228539
- GenScript Custom Purified and Recombinant Proteins Services for ENSG00000228539
- GenScript Custom Assay Services for ENSG00000228539
- GenScript Custom overexpressing Cell Line Services for ENSG00000228539
- Browse GenScript CRISPR for ENSG00000228539
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for ENSG00000228539
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for ENSG00000228539
- VectorBuilder custom plasmid, inducible vectors for ENSG00000228539
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ENSG00000228539
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for ENSG00000228539 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer