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ENSG00000227896 Gene(RNA Gene)

 

GCID:
GC10P086521
GIFtS:
12
Genes Participants
UDN Logo

Aliases for ENSG00000227896 Gene

Subcategory (RNA class) for ENSG00000227896 Gene

antisense

Quality Score for this RNA gene is

1

Aliases for ENSG00000227896 Gene

  • RP11-77P6.2 5

External Ids for ENSG00000227896 Gene

ORGUL Members for ENSG00000227896 Gene

Previous GeneCards Identifiers for ENSG00000227896 Gene

  • GC10P088281

Summaries for ENSG00000227896 Gene

GeneCards Summary for ENSG00000227896 Gene

ENSG00000227896 is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000227896 Gene

Genomics for ENSG00000227896 Gene

Products:

  1. Regulatory Element

Regulatory Elements for ENSG00000227896 Gene

Enhancers for ENSG00000227896 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G086399 2 FANTOM5 Ensembl ENCODE dbSUPER 11 -120.5 -120542 3.9 HDGF HNRNPUL1 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF143 ZNF207 GRID1 ENSG00000227896 ENSG00000272631 WAPL LDB3 OPN4 GC10M086380 GC10P086443
GH10G086953 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +435.5 435517 8.0 PKNOX1 CREB3L1 ARID4B SIN3A ZNF2 ZNF143 FOS KLF13 ZNF263 SP3 ENSG00000227896 SNCG LINC00863 NUTM2A-AS1 ADIRF-AS1 GC10P086949
GH10G086436 1.5 Ensembl ENCODE dbSUPER 11.5 -81.7 -81706 7.3 HNRNPUL1 FOXA2 MLX ARID4B DMAP1 TCF12 FOS SP5 ZHX2 MXD4 RNU6-780P WAPL ENSG00000227896 LDB3 OPN4 BMPR1A GC10P086443 GC10M086380
GH10G086309 1 dbSUPER 16.6 -206.7 -206741 11.3 HDGF PKNOX1 FOXA2 YBX1 FEZF1 YY1 CBX5 YY2 JUNB REST ENSG00000227896 FAM35A GRID1 MIR346 MMRN2 LDB3 OPN4
GH10G087091 1.4 ENCODE dbSUPER 10.9 +572.0 571951 6.2 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC NUTM2A-AS1 ENSG00000272631 FAM35A BMPR1A CFL1P1 RPL11P3 ENSG00000227896 FAM25A BMS1P3 ADIRF-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ENSG00000227896 on UCSC Golden Path with GeneCards custom track

Promoters for ENSG00000227896 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000030944 -345 2801 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF207 ZNF143

Genomic Location for ENSG00000227896 Gene

Chromosome:
10
Start:
86,521,945 bp from pter
End:
86,525,101 bp from pter
Size:
3,157 bases
Orientation:
Plus strand

Genomic View for ENSG00000227896 Gene

Genes around ENSG00000227896 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227896 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227896 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

ORGUL Member Location for ENSG00000227896 Gene

ORGUL Member Location for ENSG00000227896 gene

No data available for RefSeq DNA sequence for ENSG00000227896 Gene

Proteins for ENSG00000227896 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000227896 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227896 Gene

Domains & Families for ENSG00000227896 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000227896 Gene

Function for ENSG00000227896 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227896 Gene

Localization for ENSG00000227896 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ENSG00000227896 Gene

Pathways & Interactions for ENSG00000227896 Gene

SuperPathways for ENSG00000227896 Gene

PathCards logo More details on SuperPathways for ENSG00000227896
No Data Available

Interacting Proteins for ENSG00000227896 Gene

Gene Ontology (GO) - Biological Process for ENSG00000227896 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227896 Gene

Drugs & Compounds for ENSG00000227896 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000227896 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for ENSG00000227896 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227896 Gene

No ASD Table

Relevant External Links for ENSG00000227896 Gene

GeneLoc Exon Structure for
ENSG00000227896

Expression for ENSG00000227896 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000227896 Gene

mRNA expression in normal human tissues for ENSG00000227896 Gene
mRNA expression by GTEx for ENSG00000227896 Gene
genes like me logo Genes that share expression patterns with ENSG00000227896: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227896 Gene

Orthologs for ENSG00000227896 Gene

Evolution for ENSG00000227896 Gene

ENSEMBL:
Gene Tree for ENSG00000227896 (if available)
TreeFam:
Gene Tree for ENSG00000227896 (if available)

No data available for Orthologs for ENSG00000227896 Gene

Paralogs for ENSG00000227896 Gene

No data available for Paralogs for ENSG00000227896 Gene

Variants for ENSG00000227896 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for ENSG00000227896 Gene

Disorders for ENSG00000227896 Gene

No disorders were found for ENSG00000227896 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227896 Gene

Publications for ENSG00000227896 Gene

No publications were found for ENSG00000227896 Gene.

Products for ENSG00000227896 Gene

Sources for ENSG00000227896 Gene

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