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Aliases for ENSG00000221164 Gene

Subcategory (RNA class) for ENSG00000221164 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for ENSG00000221164 Gene

  • Small Nucleolar RNA SNORA11 5
  • SNORA11 5

External Ids for ENSG00000221164 Gene

ORGUL Members for ENSG00000221164 Gene

Previous GeneCards Identifiers for ENSG00000221164 Gene

  • GC10M074555
  • GC10M074885

Summaries for ENSG00000221164 Gene

GeneCards Summary for ENSG00000221164 Gene

ENSG00000221164 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for ENSG00000221164 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA11: U107 (SNORA11) is a member of the H/ACA class of snoRNAs that guide the sites of modification of uridines to pseudouridines [1]. This snoRNA was identified by RT-PCR from blood cells and its expression confirmed by Northern blot analysis [2]. There is no predicted target for this guide snRNA [2].

View fRNAdb secondary structures for ENSG00000221164

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000221164 Gene

Genomics for ENSG00000221164 Gene

Regulatory Elements for ENSG00000221164 Gene

Enhancers for ENSG00000221164 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G073166 1.1 ENCODE 0.3 -41.8 -41796 2.4 PKNOX1 MLX CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 NUDT13 ECD AP3M1 ZSWIM8 FAM149B1 ENSG00000221164
GH10G073131 0.7 ENCODE 0.4 -5.3 -5271 0.3 PKNOX1 FEZF1 EBF1 BCL11B ZNF664 ZNF366 ZSCAN5C SCRT2 FOS KLF8 NUDT13 CFAP70 ENSG00000221164 FAM149B1
GH10G073136 0.7 ENCODE 0.4 -10.5 -10501 1.3 ZNF680 OVOL3 FEZF1 ZNF488 ZNF843 OSR2 PRDM6 GATA2 GLI2 IKZF1 NUDT13 CFAP70 ENSG00000272791 ENSG00000221164 FAM149B1
GH10G073159 0.7 ENCODE 0.3 -33.1 -33109 0.4 CTCF ZNF654 TRIM22 MNT REST RAD21 ZFHX2 MAFF ZNF318 EGR1 CFAP70 FAM149B1 ENSG00000221164
GH10G073165 0.4 FANTOM5 0.3 -39.1 -39089 0.0 ATF3 ECD ANXA7 FAM149B1 ENSG00000221164
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ENSG00000221164 on UCSC Golden Path with GeneCards custom track

Genomic Location for ENSG00000221164 Gene

Chromosome:
10
Start:
73,126,080 bp from pter
End:
73,126,207 bp from pter
Size:
128 bases
Orientation:
Minus strand

Genomic View for ENSG00000221164 Gene

Genes around ENSG00000221164 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000221164 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000221164 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000221164 Gene

ORGUL Member Location for ENSG00000221164 gene

No data available for RefSeq DNA sequence for ENSG00000221164 Gene

Proteins for ENSG00000221164 Gene

Post-translational modifications for ENSG00000221164 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000221164 Gene

Domains & Families for ENSG00000221164 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000221164 Gene

Function for ENSG00000221164 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000221164 Gene

Localization for ENSG00000221164 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ENSG00000221164 Gene

Pathways & Interactions for ENSG00000221164 Gene

SuperPathways for ENSG00000221164 Gene

No Data Available

Interacting Proteins for ENSG00000221164 Gene

Gene Ontology (GO) - Biological Process for ENSG00000221164 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000221164 Gene

Drugs & Compounds for ENSG00000221164 Gene

No Compound Related Data Available

Transcripts for ENSG00000221164 Gene

fRNAdb Secondary structures for ENSG00000221164 Gene

  • RF00614;SNORA11;DAAB013356396.1/177-102

mRNA/cDNA for ENSG00000221164 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000221164 Gene

No ASD Table

Relevant External Links for ENSG00000221164 Gene

GeneLoc Exon Structure for
ENSG00000221164

Expression for ENSG00000221164 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000221164 Gene

genes like me logo Genes that share expression patterns with ENSG00000221164: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000221164 Gene

Orthologs for ENSG00000221164 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ENSG00000221164 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA11 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA11 35 35
  • 81 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22488 35
  • 80 (a)
OneToMany
Species where no ortholog for ENSG00000221164 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000221164 Gene

ENSEMBL:
Gene Tree for ENSG00000221164 (if available)
TreeFam:
Gene Tree for ENSG00000221164 (if available)

Paralogs for ENSG00000221164 Gene

No data available for Paralogs for ENSG00000221164 Gene

Variants for ENSG00000221164 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for ENSG00000221164 Gene

Disorders for ENSG00000221164 Gene

No disorders were found for ENSG00000221164 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000221164 Gene

Publications for ENSG00000221164 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  2. A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu A.D. … Qu L.H. (Nucleic Acids Res. 2005) 1
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 1

Products for ENSG00000221164 Gene

Sources for ENSG00000221164 Gene

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