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Aliasesfor ENSG00000212609 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Subcategory (RNA class): snRNAQuality score for this RNA gene is 2 External Ids: Ensembl: ENSG00000212609 7 Export aliases for ENSG00000212609 gene to outside databases Previous GC identifer: GC21P019641
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Summariesfor ENSG00000212609 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section fRNAdb sequence ontology for ENSG00000212609: U1 spliceosomal RNA - U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV [1]. This family does not contain the larger yeast sequences.
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Genomic Viewsfor ENSG00000212609 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for ENSG00000212609 Other transcription factors Search SABiosciences Chromatin IP Primers for ENSG00000212609 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ENSG00000212609
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Ensembl cytogenetic band: 21q21.1 ENSG00000212609 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 21 GeneLoc Exon Structure
GeneLoc location for GC21P020717: view genomic region
(about GC identifiers )
Start:
20,717,465 bp from pter
End:
20,717,629 bp from pter
Size:
165 bases
Orientation:
plus strand
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Proteinsfor ENSG00000212609 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB: --
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Protein
Domains / Familiesfor ENSG00000212609 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Functionfor ENSG00000212609 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Animal Models: Cell Line Products: GenScript Custom overexpressing Cell Line Services for ENSG00000212609 Search LifeMap BioReagents cell lines for ENSG00000212609
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Pathways & Interactionsfor ENSG00000212609 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ENSG00000212609
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Drugs & Compoundsfor ENSG00000212609 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for ENSG00000212609 Search CenterWatch for drugs/clinical trials and news about ENSG00000212609
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Transcriptsfor ENSG00000212609 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000391307(snRNA) GeneLoc Exon Structure
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Expression for ENSG00000212609 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section Expression evidence for ENSG00000212609:none
ENSG00000212609 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: -- About this image SABiosciences Custom PCR Arrays for ENSG00000212609
Primer Products: Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat ENSG00000212609 Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ENSG00000212609 Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ENSG00000212609
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Orthologsfor ENSG00000212609 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
--
ENSEMBL Gene Tree for ENSG00000212609 (if available)TreeFam Gene Tree for ENSG00000212609 (if available)
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Paralogsfor ENSG00000212609 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for ENSG00000212609 gene RNU1-5 2 RNU1-16P 2 ENSG00000207322 2 ENSG00000200885 2 ENSG00000252135 2 ENSG00000202496 2 ENSG00000238554 2 ENSG00000212456 2 ENSG00000206791 2 RNU1-12P 2 ENSG00000201616 2 ENSG00000201170 2 ENSG00000201142 2 ENSG00000200731 2 ENSG00000202167 2 ENSG00000206835 2 ENSG00000200338 2 ENSG00000202077 2 ENSG00000207182 2 RNU1-17P 2 ENSG00000206917 2 ENSG00000201699 2 ENSG00000200807 2 ENSG00000207501 2 ENSG00000212605 2 ENSG00000252491 2 ENSG00000201976 2 ENSG00000251916 2 ENSG00000252625 2 ENSG00000206629 2 ENSG00000202125 2 ENSG00000238833 2 RNU1-15P 2 ENSG00000199773 2 RNU1-19P 2 ENSG00000207205 2 ENSG00000207110 2 ENSG00000206687 2 ENSG00000201922 2 ENSG00000199836 2 ENSG00000238898 2 ENSG00000199652 2 RNU1-20P 2 ENSG00000202408 2 RNU1-6 2 RNU1-14P 2 ENSG00000252209 2 ENSG00000252166 2 ENSG00000206968 2 ENSG00000199361 2 ENSG00000212473 2 ENSG00000212153 2 ENSG00000207340 2 ENSG00000199805 2 ENSG00000202000 2 ENSG00000199846 2 ENSG00000201271 2 RNU1-13P 2 ENSG00000202313 2 ENSG00000199879 2 ENSG00000200903 2 ENSG00000239023 2 ENSG00000252925 2 RNU1-9 2 ENSG00000199283 2 ENSG00000202317 2 RNU1-3 2 ENSG00000201119 2 ENSG00000201558 2 RNU1-8 2 ENSG00000252842 2 ENSG00000252099 2 ENSG00000252681 2 ENSG00000194647 2 RNU1-4 2 ENSG00000206908 2 ENSG00000201574 2 ENSG00000251970 2 ENSG00000200340 2 ENSG00000207154 2 ENSG00000239194 2 ENSG00000200789 2 ENSG00000200296 2 ENSG00000252311 2 ENSG00000212172 2 ENSG00000251917 2 RNU1-18P 2 ENSG00000202215 2 ENSG00000253000 2 ENSG00000206698 2 RNU1-1 2 ENSG00000212544 2 ENSG00000200745 2 ENSG00000199497 2 ENSG00000201291 2 ENSG00000200997 2 ENSG00000207106 2 ENSG00000207175 2 ENSG00000199469 2 ENSG00000207220 2 ENSG00000200597 2 ENSG00000207349 2 ENSG00000212424 2 RNU1-7 2 ENSG00000252513 2 ENSG00000201105 2 ENSG00000199687 2 ENSG00000206820 2 ENSG00000202199 2 ENSG00000252990 2 ENSG00000206828 2 ENSG00000201910 2 ENSG00000201183 2 ENSG00000207056 2 ENSG00000252426 2 ENSG00000253089 2 ENSG00000199554 2 RNU1-22P 2 ENSG00000252105 2 ENSG00000199488 2 ENSG00000212550 2 ENSG00000212170 2 ENSG00000194297 2 RNU1-21P 2 ENSG00000252826 2 RNU1-23P 2 ENSG00000207339 2 ENSG00000201493 2 ENSG00000238421 2 ENSG00000201737 2 ENSG00000207201 2 ENSG00000200800 2 ENSG00000201033 2 ENSG00000206624 2 ENSG00000252850 2 ENSG00000202380 2 RNU1-10P 2 ENSG00000206694 2 RNU1-24P 2 ENSG00000252561 2 RNU1-11P 2 RNU1-2 2 ENSG00000200975 2 ENSG00000199426 2
ENSG00000212609 for paralogs About GeneDecksing
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Genomic Variantsfor ENSG00000212609 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor ENSG00000212609 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section --
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Publicationsfor ENSG00000212609 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
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External Searches for ENSG00000212609 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ENSG00000212609 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing ENSG00000212609 gene
(According to HUGE )
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Specialized Databases showing ENSG00000212609 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for ENSG00000212609 gene: Search GeneIP for patents involving ENSG00000212609 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ENSG00000212609 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ENSG00000212609 Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ENSG00000212609 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ENSG00000212609 Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ENSG00000212609 Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ENSG00000212609 Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ENSG00000212609
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat ENSG00000212609
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