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ENSG00000202498 Gene(RNA Gene)

 

GCID:
GC01M215630
GIFtS:
9
Genes Participants
UDN Logo

Aliases for ENSG00000202498 Gene

Subcategory (RNA class) for ENSG00000202498 Gene

snoRNA

Quality Score for this RNA gene is

1

Aliases for ENSG00000202498 Gene

  • Small Nucleolar RNA SNORD116 5
  • SNORD116 5

External Ids for ENSG00000202498 Gene

ORGUL Members for ENSG00000202498 Gene

Previous GeneCards Identifiers for ENSG00000202498 Gene

  • GC01M212192
  • GC01M213871
  • GC01M215803

Summaries for ENSG00000202498 Gene

GeneCards Summary for ENSG00000202498 Gene

ENSG00000202498 is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with ENSG00000202498 include Chromosomal Disease.

Additional gene information for ENSG00000202498 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000202498 Gene

Genomics for ENSG00000202498 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for ENSG00000202498 Gene

Promoters and enhancers for ENSG00000202498 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01I215565 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 0.2 +60.9 60921 7 HDGF PKNOX1 CLOCK FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 ZNF2 KCTD3 GC01M215567 LOC105372919 ENSG00000202498 GC01M215631
GH01I215635 Enhancer 1 Ensembl ENCODE 0.4 -6.4 -6354 2.5 FOXA2 ZFP64 DMAP1 RAD21 YY1 IKZF2 RXRA ZBTB11 CEBPB ZC3H11A ENSG00000202498 GC01M215631 GC01P215702 GC01P215703 GC01P215704 GC01P215705 GC01P215706 GC01P215707 GC01P215708 USH2A
GH01I215582 Enhancer 1.1 Ensembl ENCODE 0.2 +46.8 46849 2 PKNOX1 NEUROD1 SIN3A FEZF1 ZNF2 YY1 ZNF121 FOS RXRA TSHZ1 GC01M215567 KCTD3 ENSG00000202498 GC01M215631
GH01I215665 Enhancer 0.7 FANTOM5 0.3 -35.3 -35311 0.3 NR2F1 CBFA2T3 DPF2 EGR1 TARDBP VEZF1 IKZF1 NBN CBFA2T2 ATF7 ENSG00000202498 GC01M215631 GC01P215702 GC01P215703 GC01P215704 GC01P215705 GC01P215706 GC01P215707 GC01P215708 USH2A
GH01I215651 Enhancer 0.4 UCNEbase 0.3 -21.2 -21221 0.3 GC01M215631 ENSG00000202498 GC01P215702 GC01P215703 GC01P215704 GC01P215705 GC01P215706 GC01P215707 GC01P215708 USH2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000202498 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000202498 Gene

Genomic Locations for ENSG00000202498 Gene
chr1:215,630,026-215,630,117
(GRCh38/hg38)
Size:
92 bases
Orientation:
Minus strand
chr1:215,803,368-215,803,459
(GRCh37/hg19)

Genomic View for ENSG00000202498 Gene

Genes around ENSG00000202498 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000202498 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000202498 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000202498 Gene

Proteins for ENSG00000202498 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000202498 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000202498 Gene

Domains & Families for ENSG00000202498 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000202498 Gene

Function for ENSG00000202498 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000202498 Gene

Localization for ENSG00000202498 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000202498 Gene

Pathways & Interactions for ENSG00000202498 Gene

SuperPathways for ENSG00000202498 Gene

PathCards logo More details on SuperPathways for ENSG00000202498
No Data Available

Interacting Proteins for ENSG00000202498 Gene

Gene Ontology (GO) - Biological Process for ENSG00000202498 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000202498 Gene

Drugs & Compounds for ENSG00000202498 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000202498 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000202498 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000202498 Gene

No ASD Table

Relevant External Links for ENSG00000202498 Gene

GeneLoc Exon Structure for
ENSG00000202498

Expression for ENSG00000202498 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000202498 Gene

mRNA expression in normal human tissues for ENSG00000202498 Gene
mRNA expression by GTEx for ENSG00000202498 Gene
genes like me logo Genes that share expression patterns with ENSG00000202498: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000202498 Gene

Orthologs for ENSG00000202498 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for ENSG00000202498 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD116 34
  • 73 (a)
 ManyToMany
mouse
(Mus musculus)
 Mammalia Gm22373 34
  • 56 (a)
 ManyToMany
Species where no ortholog for ENSG00000202498 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000202498 Gene

ENSEMBL:
Gene Tree for ENSG00000202498 (if available)
TreeFam:
Gene Tree for ENSG00000202498 (if available)

Paralogs for ENSG00000202498 Gene

No data available for Paralogs for ENSG00000202498 Gene

Variants for ENSG00000202498 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000202498 Gene

Disorders for ENSG00000202498 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000202498 Gene - From: DISEASES

Disorder Aliases PubMed IDs
chromosomal disease
  • chromosomal disorders
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000202498: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000202498 Gene

Publications for ENSG00000202498 Gene

No publications were found for ENSG00000202498 Gene.

Products for ENSG00000202498 Gene

Sources for ENSG00000202498 Gene

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