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Aliases for ENSG00000201547 Gene

Subcategory (RNA class) for ENSG00000201547 Gene

Y RNA

Quality Score for this RNA gene is

3

Aliases for ENSG00000201547 Gene

  • Y RNA 5
  • Y_RNA 5

External Ids for ENSG00000201547 Gene

ORGUL Members for ENSG00000201547 Gene

Previous GeneCards Identifiers for ENSG00000201547 Gene

  • GC17M062835
  • GC17M065405

Summaries for ENSG00000201547 Gene

GeneCards Summary for ENSG00000201547 Gene

ENSG00000201547 is an RNA Gene, and is affiliated with the Y RNA class.

fRNAdb sequence ontologies for ENSG00000201547 Gene

  • Y RNA: Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs -- hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin. This family includes a significant number of annotated pseudogenes and the model is expected to discriminate poorly between real and Y RNA related pseudogenes.

Additional gene information for ENSG00000201547 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000201547 Gene

Genomics for ENSG00000201547 Gene

Regulatory Elements for ENSG00000201547 Gene

Enhancers for ENSG00000201547 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H067388 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +17.4 17352 5 PKNOX1 FOXA2 YY1 ZNF121 FOS ATF7 RUNX3 JUNB TSHZ1 PPARG HELZ NOL11 BPTF PITPNC1 LOC100418928 GC17P067379 GC17P067378 ENSG00000201547
GH17H067418 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -13.6 -13614 7 TBP BATF BRCA1 ZBTB40 RFX5 YY1 ZNF121 ZNF366 ELK1 SCRT2 PITPNC1 PSMD12 MIR548D2 MIR548AA2 HELZ BPTF ENSG00000201547 RN7SL756P
GH17H067411 0.8 ENCODE dbSUPER 0.7 -2.9 -2932 0 JUND HNF4G HNF4A YY1 ENSG00000201547 RN7SL756P
GH17H067413 0.8 ENCODE dbSUPER 0.7 -4.7 -4684 1 ZNF217 ZNF146 ZNF280D HDAC2 ZNF580 ENSG00000201547 RN7SL756P
GH17H067399 1.4 Ensembl ENCODE dbSUPER 0.4 +7.1 7095 4 HDGF FOXA2 NFIB FEZF1 ZBTB7B YY1 SCRT2 RCOR1 CEBPB REST PSMD12 MIR548AA2 MIR548D2 PITPNC1 ENSG00000201547 GC17P067378 GC17P067379
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ENSG00000201547 on UCSC Golden Path with GeneCards custom track

Genomic Location for ENSG00000201547 Gene

Chromosome:
17
Start:
67,408,774 bp from pter
End:
67,408,881 bp from pter
Size:
108 bases
Orientation:
Minus strand

Genomic View for ENSG00000201547 Gene

Genes around ENSG00000201547 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000201547 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000201547 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000201547 Gene

ORGUL Member Location for ENSG00000201547 gene

No data available for RefSeq DNA sequence for ENSG00000201547 Gene

Proteins for ENSG00000201547 Gene

Post-translational modifications for ENSG00000201547 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000201547 Gene

Domains & Families for ENSG00000201547 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000201547 Gene

Function for ENSG00000201547 Gene

Phenotypes From GWAS Catalog for ENSG00000201547 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000201547 Gene

Localization for ENSG00000201547 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000201547 Gene

Pathways & Interactions for ENSG00000201547 Gene

SuperPathways for ENSG00000201547 Gene

No Data Available

Interacting Proteins for ENSG00000201547 Gene

Gene Ontology (GO) - Biological Process for ENSG00000201547 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000201547 Gene

Drugs & Compounds for ENSG00000201547 Gene

No Compound Related Data Available

Transcripts for ENSG00000201547 Gene

mRNA/cDNA for ENSG00000201547 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000201547 Gene

No ASD Table

Relevant External Links for ENSG00000201547 Gene

GeneLoc Exon Structure for
ENSG00000201547

Expression for ENSG00000201547 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000201547 Gene

genes like me logo Genes that share expression patterns with ENSG00000201547: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000201547 Gene

Orthologs for ENSG00000201547 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ENSG00000201547 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 34
  • 98 (a)
OneToOne
Species where no ortholog for ENSG00000201547 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000201547 Gene

ENSEMBL:
Gene Tree for ENSG00000201547 (if available)
TreeFam:
Gene Tree for ENSG00000201547 (if available)

Paralogs for ENSG00000201547 Gene

No data available for Paralogs for ENSG00000201547 Gene

Variants for ENSG00000201547 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for ENSG00000201547 Gene

Disorders for ENSG00000201547 Gene

No disorders were found for ENSG00000201547 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000201547 Gene

Publications for ENSG00000201547 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

Products for ENSG00000201547 Gene

Sources for ENSG00000201547 Gene

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