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Aliases for ENSG00000201542 Gene

Subcategory (RNA class) for ENSG00000201542 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for ENSG00000201542 Gene

  • Small Nucleolar RNA SNORA62/SNORA6 Family 5
  • SNORA62 5

External Ids for ENSG00000201542 Gene

ORGUL Members for ENSG00000201542 Gene

Previous GeneCards Identifiers for ENSG00000201542 Gene

  • GC01P035445
  • GC01P035548
  • GC01P035775

Summaries for ENSG00000201542 Gene

GeneCards Summary for ENSG00000201542 Gene

ENSG00000201542 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for ENSG00000201542 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA62/SNORA6 family: The members of this family belong to the H/ACA class of snoRNAs which are predicted to guide the sites of modification of uridines to pseudouridines [3]. This family includes human snoRNAs E2 (SNORA62), ACA6 (SNORA6) and M2 and mouse MBI-136. In humans both E2 and ACA6 are encoded in the introns on the same host gene (LAMR1)[1,3]. E2 is involved in the processing of eukaryotic pre-rRNA and has regions of complementarity to 28S rRNA [2]. ACA6 is predicted to guide the pseudouridylation of residue U3616 of 28S rRNA [5].

View fRNAdb secondary structures for ENSG00000201542

Additional gene information for ENSG00000201542 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000201542 Gene

Genomics for ENSG00000201542 Gene

Regulatory Elements for ENSG00000201542 Gene

Enhancers for ENSG00000201542 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H035345 1.3 FANTOM5 Ensembl ENCODE 11.5 +35.5 35527 1 CTCF FOXA2 ARID4B ZNF384 CEBPG ZNF644 KMT2B RAD21 YY1 TEAD3 SFPQ ENSG00000201542 ENSG00000201868 RPL5P4
GH01H035202 1.2 Ensembl ENCODE 10.8 -108.0 -107973 0 ELF3 FOXA2 RB1 TBL1XR1 ARID4B RAD21 RFX5 YY1 ZNF366 ZNF143 ENSG00000201542 GC01P035198 GC01M035264
GH01H035267 1.1 ENCODE 11.2 -41.3 -41330 2 HDGF PKNOX1 ARNT ZFP64 SIN3A FEZF1 ZNF2 YY1 ZNF766 ZNF143 SFPQ ENSG00000201542 ENSG00000201868 ZMYM6 LOC653160 TMEM35B KIAA0319L ZMYM4 RN7SL503P
GH01H035162 1 Ensembl ENCODE 11 -147.8 -147825 0 FOXA2 IRF2 SAP130 MLX MAX ZNF384 RAD21 YY1 GATA3 GATA2 ZMYM1 ENSG00000201868 SFPQ ZMYM6 ENSG00000201542 LOC653160 TMEM35B LOC105378644
GH01H035287 0.8 Ensembl ENCODE 12.3 -21.8 -21797 2 JUND JUN CEBPB HMBOX1 FOS PRDM1 KIAA0319L ENSG00000201542 ENSG00000201868 SFPQ LOC653160 TMEM35B NCDN RN7SL503P ZMYM4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ENSG00000201542 on UCSC Golden Path with GeneCards custom track

Genomic Location for ENSG00000201542 Gene

Chromosome:
1
Start:
35,310,274 bp from pter
End:
35,310,425 bp from pter
Size:
152 bases
Orientation:
Plus strand

Genomic View for ENSG00000201542 Gene

Genes around ENSG00000201542 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000201542 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000201542 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000201542 Gene

ORGUL Member Location for ENSG00000201542 gene

No data available for RefSeq DNA sequence for ENSG00000201542 Gene

Proteins for ENSG00000201542 Gene

Post-translational modifications for ENSG00000201542 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000201542 Gene

Domains & Families for ENSG00000201542 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000201542 Gene

Function for ENSG00000201542 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000201542 Gene

Localization for ENSG00000201542 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000201542 Gene

Pathways & Interactions for ENSG00000201542 Gene

SuperPathways for ENSG00000201542 Gene

No Data Available

Interacting Proteins for ENSG00000201542 Gene

Gene Ontology (GO) - Biological Process for ENSG00000201542 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000201542 Gene

Drugs & Compounds for ENSG00000201542 Gene

No Compound Related Data Available

Transcripts for ENSG00000201542 Gene

fRNAdb Secondary structures for ENSG00000201542 Gene

  • RF00091;SNORA62;DAAB012025776.1/87-1

mRNA/cDNA for ENSG00000201542 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000201542 Gene

No ASD Table

Relevant External Links for ENSG00000201542 Gene

GeneLoc Exon Structure for
ENSG00000201542

Expression for ENSG00000201542 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000201542 Gene

genes like me logo Genes that share expression patterns with ENSG00000201542: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000201542 Gene

Orthologs for ENSG00000201542 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000201542 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA62 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA62 34
  • 77 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA62 34
  • 67 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA62 34
  • 67 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA62 34
  • 55 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia SNORA62 34
  • 48 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA62 34
  • 55 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA62 34
  • 63 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA62 34
  • 43 (a)
OneToMany
Species where no ortholog for ENSG00000201542 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000201542 Gene

ENSEMBL:
Gene Tree for ENSG00000201542 (if available)
TreeFam:
Gene Tree for ENSG00000201542 (if available)

Paralogs for ENSG00000201542 Gene

No data available for Paralogs for ENSG00000201542 Gene

Variants for ENSG00000201542 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for ENSG00000201542 Gene

Disorders for ENSG00000201542 Gene

No disorders were found for ENSG00000201542 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000201542 Gene

Publications for ENSG00000201542 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  2. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1
  3. Three small nucleolar RNAs that are involved in ribosomal RNA precursor processing. (PMID: 9144174) Mishra RK … Eliceiri GL (Proceedings of the National Academy of Sciences of the United States of America 1997) 1
  4. The gene for human E2 small nucleolar RNA resides in an intron of a laminin-binding protein gene. (PMID: 8586453) Selvamurugan N … Eliceiri GL (Genomics 1995) 1

Products for ENSG00000201542 Gene

Sources for ENSG00000201542 Gene

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