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Aliases for ENSG00000200294 Gene

Subcategory (RNA class) for ENSG00000200294 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for ENSG00000200294 Gene

  • Small Nucleolar RNA SNORA36 Family 5
  • SNORA36 5

External Ids for ENSG00000200294 Gene

ORGUL Members for ENSG00000200294 Gene

Previous GeneCards Identifiers for ENSG00000200294 Gene

  • GC10P073611
  • GC10P073940

Summaries for ENSG00000200294 Gene

GeneCards Summary for ENSG00000200294 Gene

ENSG00000200294 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for ENSG00000200294 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA36 family: ACA36 (SNORA36A) belongs to the H/ACA class of snoRNAs which are predicted to guide the sites of modification of uridines to pseudouridines [1]. ACA36 is predicted to guide the pseudouridylation of residue U105 and U1244 of 18S rRNA [4]. This family includes the mouse homologue snoMBI-87 [3] and also identifies the human paralog ACA36B (SNORA36B) [2].

  • Small nucleolar RNA SNORA36 family: ACA36 (SNORA36A) belongs to the H/ACA class of snoRNAs which are predicted to guide the sites of modification of uridines to pseudouridines [1]. ACA36 is predicted to guide the pseudouridylation of residue U105 and U1244 of 18S rRNA [4]. This family includes the mouse homologue snoMBI-87 [3] and also identifies the human paralog ACA36B (SNORA36B) [2].

View fRNAdb secondary structures for ENSG00000200294

Additional gene information for ENSG00000200294 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000200294 Gene

Genomics for ENSG00000200294 Gene

Regulatory Elements for ENSG00000200294 Gene

Enhancers for ENSG00000200294 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H072095 1.6 Ensembl ENCODE dbSUPER 10.5 -82.9 -82916 4 PKNOX1 FOXA2 MLX ARID4B FEZF1 DMAP1 ZNF2 YY1 FOS SP3 DNAJB12 SPOCK2 ENSG00000200294 ANAPC16 GC10P072225
GH10H072222 1.3 Ensembl ENCODE dbSUPER 11.2 +42.7 42679 2 CTCF PKNOX1 ZNF384 ZBTB40 RAD21 EED ADNP SMC3 ZNF143 ETV6 ENSG00000200294 ASCC1 NUDT13 ENSG00000200170 GC10M072248
GH10H072229 1.2 Ensembl ENCODE dbSUPER 10.9 +49.6 49608 2 PKNOX1 GFI1B CEBPB MAX FEZF1 REST ZNF384 RAD21 YY1 JUND ENSG00000200294 ASCC1 FAM149B1 ENSG00000272630 ENSG00000200170 GC10M072248
GH10H072227 1.2 ENCODE dbSUPER 10.9 +47.6 47624 1 PKNOX1 ARNT FEZF1 ZNF2 KLF7 TSHZ1 ZNF488 ZNF623 ZNF518A ZNF610 HMGN2P34 CDH23-AS1 ENSG00000200294 DNAJB12 ASCC1 FAM149B1 ENSG00000272630 ENSG00000200170 GC10M072248
GH10H072133 0.8 ENCODE 11.4 -47.1 -47111 0 PKNOX1 ATF1 TBL1XR1 BMI1 FEZF1 BATF ATF7 ETV6 RUNX3 CREM ASCC1 ANAPC16 ENSG00000200170 ENSG00000200294 SPOCK2 GC10P072225
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ENSG00000200294 on UCSC Golden Path with GeneCards custom track

Genomic Location for ENSG00000200294 Gene

Chromosome:
10
Start:
72,180,858 bp from pter
End:
72,180,989 bp from pter
Size:
132 bases
Orientation:
Plus strand

Genomic View for ENSG00000200294 Gene

Genes around ENSG00000200294 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000200294 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000200294 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000200294 Gene

ORGUL Member Location for ENSG00000200294 gene

No data available for RefSeq DNA sequence for ENSG00000200294 Gene

Proteins for ENSG00000200294 Gene

Post-translational modifications for ENSG00000200294 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000200294 Gene

Domains & Families for ENSG00000200294 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000200294 Gene

Function for ENSG00000200294 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000200294 Gene

Localization for ENSG00000200294 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000200294 Gene

Pathways & Interactions for ENSG00000200294 Gene

SuperPathways for ENSG00000200294 Gene

No Data Available

Interacting Proteins for ENSG00000200294 Gene

Gene Ontology (GO) - Biological Process for ENSG00000200294 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000200294 Gene

Drugs & Compounds for ENSG00000200294 Gene

No Compound Related Data Available

Transcripts for ENSG00000200294 Gene

fRNAdb Secondary structures for ENSG00000200294 Gene

  • RF00340;SNORA36;DAAB013264499.1/113-2

mRNA/cDNA for ENSG00000200294 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000200294 Gene

No ASD Table

Relevant External Links for ENSG00000200294 Gene

GeneLoc Exon Structure for
ENSG00000200294

Expression for ENSG00000200294 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000200294 Gene

genes like me logo Genes that share expression patterns with ENSG00000200294: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000200294 Gene

Orthologs for ENSG00000200294 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000200294 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA36 34
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA36 34
  • 75 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA36 34 34
  • 65 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA36 34
  • 64 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25520 34
  • 61 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA36 34
  • 58 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA36 34
  • 61 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA36 34
  • 54 (a)
OneToMany
Species where no ortholog for ENSG00000200294 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000200294 Gene

ENSEMBL:
Gene Tree for ENSG00000200294 (if available)
TreeFam:
Gene Tree for ENSG00000200294 (if available)

Paralogs for ENSG00000200294 Gene

No data available for Paralogs for ENSG00000200294 Gene

Variants for ENSG00000200294 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for ENSG00000200294 Gene

Disorders for ENSG00000200294 Gene

No disorders were found for ENSG00000200294 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000200294 Gene

Publications for ENSG00000200294 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  2. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T (Cell 2002) 1
  3. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1

Products for ENSG00000200294 Gene

Sources for ENSG00000200294 Gene

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