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Aliases for EML5 Gene

Aliases for EML5 Gene

  • Echinoderm Microtubule Associated Protein Like 5 2 3 5
  • EMAP-5 3 4
  • Echinoderm Microtubule-Associated Protein-Like 5 3
  • EMAP-2 3

External Ids for EML5 Gene

Previous GeneCards Identifiers for EML5 Gene

  • GC14M082988
  • GC14M087161
  • GC14M087072
  • GC14M087070
  • GC14M088150
  • GC14M089081
  • GC14M069251
  • GC14M089159
  • GC14M089582
  • GC14M089881
  • GC14M090292
  • GC14M089147
  • GC14M089257
  • GC14M089317
  • GC14M090498
  • GC14M090830
  • GC14M091103

Summaries for EML5 Gene

GeneCards Summary for EML5 Gene

EML5 (Echinoderm Microtubule Associated Protein Like 5) is a Protein Coding gene. An important paralog of this gene is EML6.

UniProtKB/Swiss-Prot for EML5 Gene

  • May modify the assembly dynamics of microtubules, such that microtubules are slightly longer, but more dynamic.

Additional gene information for EML5 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EML5 Gene

Genomics for EML5 Gene

Regulatory Elements for EML5 Gene

Enhancers for EML5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H088667 1 Ensembl ENCODE 12 +125.0 125027 1.3 CTCF ZFP64 ZNF266 RAD21 SMC3 ZNF143 RCOR1 IKZF2 ZBTB20 SMARCA5 LOC105370614 EML5 FAM35CP SPATA7 PIR31268
GH14H089184 1 Ensembl ENCODE 11.2 -393.5 -393536 3.7 CTCF FOSL1 CTBP1 GATA3 FOSL2 FOS NFE2 RCOR1 TCF7L2 SMARCE1 TTC8 EML5 ENSG00000252655 SPATA7 ENSG00000277801 PIR42676
GH14H088834 0.8 Ensembl ENCODE 11.7 -42.5 -42473 2.4 JUND ZSCAN5C MAFK ZBTB20 EML5 LOC105370614 GC14P088843 TTC8
GH14H088668 0.7 ENCODE 12 +124.1 124132 0.1 ZBED1 JUNB DPF2 BATF ZNF217 IKZF1 EED ATF7 RUNX3 IKZF2 EML5 PIR31268
GH14H088830 0.6 ENCODE 11.7 -38.3 -38299 2.7 ZNF316 JUND ZNF184 MAFG NFE2 EMSY MAFK NFE2L2 RNU4-22P EML5 LOC105370614 SPATA7 GC14P088843 TTC8
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EML5 on UCSC Golden Path with GeneCards custom track

Promoters for EML5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000071730 -48 1201 ZNF76 DEAF1 SIN3A DMAP1 RAD21 ZNF143 ZEB2 REST ZNF217 TFDP1

Genomic Locations for EML5 Gene

Genomic Locations for EML5 Gene
chr14:88,612,431-88,792,752
(GRCh38/hg38)
Size:
180,322 bases
Orientation:
Minus strand
chr14:89,078,775-89,259,096
(GRCh37/hg19)

Genomic View for EML5 Gene

Genes around EML5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EML5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EML5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EML5 Gene

Proteins for EML5 Gene

  • Protein details for EML5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q05BV3-EMAL5_HUMAN
    Recommended name:
    Echinoderm microtubule-associated protein-like 5
    Protein Accession:
    Q05BV3
    Secondary Accessions:
    • B9EK59
    • Q5H9N6
    • Q6UYC9
    • Q6ZRP3
    • Q6ZT03

    Protein attributes for EML5 Gene

    Size:
    1969 amino acids
    Molecular mass:
    219427 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH32685.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=BAC86793.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=BAC87266.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=CAI46257.1; Type=Miscellaneous discrepancy; Note=The sequence differs from that shown in N-terminus because it seems to be derived from a pre-mRNA.; Evidence={ECO:0000305};

    Alternative splice isoforms for EML5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for EML5 Gene

Post-translational modifications for EML5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for EML5 Gene

Domains & Families for EML5 Gene

Gene Families for EML5 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for EML5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q05BV3

UniProtKB/Swiss-Prot:

EMAL5_HUMAN :
  • Belongs to the WD repeat EMAP family.
Family:
  • Belongs to the WD repeat EMAP family.
genes like me logo Genes that share domains with EML5: view

Function for EML5 Gene

Molecular function for EML5 Gene

UniProtKB/Swiss-Prot Function:
May modify the assembly dynamics of microtubules, such that microtubules are slightly longer, but more dynamic.

Gene Ontology (GO) - Molecular Function for EML5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003824 catalytic activity IEA --
GO:0008017 microtubule binding IBA --
genes like me logo Genes that share ontologies with EML5: view

Phenotypes for EML5 Gene

genes like me logo Genes that share phenotypes with EML5: view

Animal Model Products

CRISPR Products

miRNA for EML5 Gene

miRTarBase miRNAs that target EML5

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for EML5 Gene

Localization for EML5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for EML5 Gene

Cytoplasm, cytoskeleton.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for EML5 gene
Compartment Confidence
extracellular 5
cytoskeleton 4
nucleus 2
cytosol 2

Gene Ontology (GO) - Cellular Components for EML5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0005874 microtubule IEA --
GO:0015630 microtubule cytoskeleton IBA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with EML5: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for EML5 Gene

Pathways & Interactions for EML5 Gene

No Data Available

Interacting Proteins for EML5 Gene

Selected Interacting proteins: Q05BV3-EMAL5_HUMAN for EML5 Gene via IID

Gene Ontology (GO) - Biological Process for EML5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with EML5: view

No data available for Pathways by source and SIGNOR curated interactions for EML5 Gene

Drugs & Compounds for EML5 Gene

No Compound Related Data Available

Transcripts for EML5 Gene

Unigene Clusters for EML5 Gene

Echinoderm microtubule associated protein like 5:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for EML5 Gene

No ASD Table

Relevant External Links for EML5 Gene

GeneLoc Exon Structure for
EML5
ECgene alternative splicing isoforms for
EML5

Expression for EML5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EML5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for EML5 Gene

This gene is overexpressed in Ovary (x7.0), Brain - Cerebellar Hemisphere (x6.5), and Brain - Cerebellum (x6.4).

Protein differential expression in normal tissues from HIPED for EML5 Gene

This gene is overexpressed in Pancreas (22.3), Monocytes (11.6), Heart (9.4), and Breast (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for EML5 Gene



NURSA nuclear receptor signaling pathways regulating expression of EML5 Gene:

EML5

SOURCE GeneReport for Unigene cluster for EML5 Gene:

Hs.325846

Evidence on tissue expression from TISSUES for EML5 Gene

  • Eye(4.2)
  • Nervous system(4.2)
genes like me logo Genes that share expression patterns with EML5: view

Primer Products

No data available for Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for EML5 Gene

Orthologs for EML5 Gene

This gene was present in the common ancestor of animals.

Orthologs for EML5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia EML5 33 34
  • 99.54 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 94 (a)
OneToMany
-- 34
  • 89 (a)
OneToMany
dog
(Canis familiaris)
Mammalia EML5 33 34
  • 93.76 (n)
oppossum
(Monodelphis domestica)
Mammalia EML5 34
  • 93 (a)
OneToOne
cow
(Bos Taurus)
Mammalia EML5 33 34
  • 91.74 (n)
mouse
(Mus musculus)
Mammalia Eml5 33 16 34
  • 90.73 (n)
rat
(Rattus norvegicus)
Mammalia Eml5 33
  • 90.41 (n)
chicken
(Gallus gallus)
Aves EML5 33 34
  • 83.41 (n)
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 87 (a)
OneToMany
-- 34
  • 79 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia eml5 33
  • 78.01 (n)
zebrafish
(Danio rerio)
Actinopterygii EML5 34
  • 85 (a)
OneToOne
si:dkey-1f12.3 33
  • 74.6 (n)
wufb77g05 33
fruit fly
(Drosophila melanogaster)
Insecta DCX-EMAP 34
  • 21 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea elp-1 34
  • 22 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 60 (a)
OneToMany
Species where no ortholog for EML5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for EML5 Gene

ENSEMBL:
Gene Tree for EML5 (if available)
TreeFam:
Gene Tree for EML5 (if available)

Paralogs for EML5 Gene

Paralogs for EML5 Gene

(5) SIMAP similar genes for EML5 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with EML5: view

Variants for EML5 Gene

Sequence variations from dbSNP and Humsavar for EML5 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000016786 -- 88,625,207(+) TATGT(A/G)TAATG intron-variant
rs1000046620 -- 88,714,241(+) TTTGA(A/C)TAAGA intron-variant
rs1000050784 -- 88,641,128(+) AAAAA(A/C)CTATC intron-variant
rs1000052637 -- 88,757,822(+) TTGCT(C/T)TCTTC intron-variant
rs1000089220 -- 88,617,697(+) TCTAG(C/G)CTCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EML5 Gene

Variant ID Type Subtype PubMed ID
nsv983848 CNV duplication 23825009
nsv85511 CNV deletion 16902084
nsv509543 CNV insertion 20534489
nsv479211 CNV novel sequence insertion 20440878
nsv475884 CNV novel sequence insertion 20440878
nsv1391 CNV insertion 18451855
nsv1390 CNV insertion 18451855
nsv1125589 CNV tandem duplication 24896259
nsv1110906 OTHER inversion 24896259
esv998149 CNV insertion 20482838
esv6674 CNV gain 19470904
esv3635281 CNV loss 21293372
esv3635277 CNV gain 21293372
esv3371598 CNV insertion 20981092
esv3304540 CNV mobile element insertion 20981092
esv2748998 CNV deletion 23290073
esv2678445 CNV deletion 23128226
esv2671135 CNV deletion 23128226
esv1552947 CNV insertion 17803354
esv1437722 CNV insertion 17803354
esv1000040 CNV deletion 20482838
dgv1955n100 CNV gain 25217958

Variation tolerance for EML5 Gene

Residual Variation Intolerance Score: 0.898% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.95; 87.26% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for EML5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EML5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EML5 Gene

Disorders for EML5 Gene

Relevant External Links for EML5

Genetic Association Database (GAD)
EML5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EML5

No disorders were found for EML5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EML5 Gene

Publications for EML5 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  3. An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. (PMID: 27173435) Boldt K … UK10K Rare Diseases Group (Nature communications 2016) 3 60
  4. Substrate trapping proteomics reveals targets of the βTrCP2/FBXW11 ubiquitin ligase. (PMID: 25332235) Kim TY … Major MB (Molecular and cellular biology 2015) 3 60
  5. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal KB … Olsen JV (Science signaling 2015) 3 60

Products for EML5 Gene

Sources for EML5 Gene

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