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Aliases for EMID1 Gene

Aliases for EMID1 Gene

  • EMI Domain Containing 1 2 3
  • Emilin And Multimerin Domain-Containing Protein 1 3 4
  • EMU1 3 4
  • Emilin And Multimerin-Domain Containing Protein 1 2
  • EMI Domain-Containing Protein 1 3
  • Putative Emu1 2
  • EMI5 3

External Ids for EMID1 Gene

Summaries for EMID1 Gene

GeneCards Summary for EMID1 Gene

EMID1 (EMI Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is COL26A1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EMID1 Gene

Genomics for EMID1 Gene

Genomic Location for EMID1 Gene

Start:
29,205,851 bp from pter
End:
29,259,597 bp from pter
Size:
53,747 bases
Orientation:
Plus strand

Genomic View for EMID1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for EMID1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EMID1 Gene

Regulatory Elements for EMID1 Gene

Proteins for EMID1 Gene

  • Protein details for EMID1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96A84-EMID1_HUMAN
    Recommended name:
    EMI domain-containing protein 1
    Protein Accession:
    Q96A84
    Secondary Accessions:
    • B0QYK6
    • Q6ICG1
    • Q86SS7

    Protein attributes for EMID1 Gene

    Size:
    441 amino acids
    Molecular mass:
    45292 Da
    Quaternary structure:
    • Homo- or heteromers

    Alternative splice isoforms for EMID1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for EMID1 Gene

Proteomics data for EMID1 Gene at MOPED

Post-translational modifications for EMID1 Gene

  • Glycosylation at Asn51 and Asn136

No data available for DME Specific Peptides for EMID1 Gene

Domains for EMID1 Gene

Gene Families for EMID1 Gene

HGNC:
  • EMID :EMI domain containing

Protein Domains for EMID1 Gene

Suggested Antigen Peptide Sequences for EMID1 Gene

Graphical View of Domain Structure for InterPro Entry

Q96A84

UniProtKB/Swiss-Prot:

EMID1_HUMAN
Domain:
  • Contains 1 collagen-like domain.:
    • Q96A84
  • Contains 1 EMI domain.:
    • Q96A84
genes like me logo Genes that share domains with EMID1: view

Function for EMID1 Gene

Gene Ontology (GO) - Molecular Function for EMID1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with EMID1: view

Phenotypes for EMID1 Gene

MGI mutant phenotypes for EMID1:
inferred from 1 alleles
GenomeRNAi human phenotypes for EMID1:
genes like me logo Genes that share phenotypes with EMID1: view

miRNA for EMID1 Gene

miRTarBase miRNAs that target EMID1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for EMID1 Gene

Localization for EMID1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for EMID1 Gene

Secreted, extracellular space, extracellular matrix.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for EMID1 Gene COMPARTMENTS Subcellular localization image for EMID1 gene
Compartment Confidence
extracellular 5
endoplasmic reticulum 2
golgi apparatus 2
cytosol 1
lysosome 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for EMID1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005578 proteinaceous extracellular matrix IEA --
GO:0005581 collagen trimer IEA --
GO:0005783 endoplasmic reticulum IEA --
GO:0005794 Golgi apparatus IEA --
genes like me logo Genes that share ontologies with EMID1: view

Pathways for EMID1 Gene

SuperPathways for EMID1 Gene

No Data Available

Interacting Proteins for EMID1 Gene

Gene Ontology (GO) - Biological Process for EMID1 Gene

None

No data available for Pathways by source for EMID1 Gene

Transcripts for EMID1 Gene

Unigene Clusters for EMID1 Gene

EMI domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EMID1 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9
SP1: - - -
SP2: -
SP3: - -
SP4:

Relevant External Links for EMID1 Gene

GeneLoc Exon Structure for
EMID1
ECgene alternative splicing isoforms for
EMID1

Expression for EMID1 Gene

mRNA expression in normal human tissues for EMID1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for EMID1 Gene

This gene is overexpressed in Spleen (7.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for EMID1 Gene

SOURCE GeneReport for Unigene cluster for EMID1 Gene Hs.289106

genes like me logo Genes that share expressions with EMID1: view

No data available for mRNA Expression by UniProt/SwissProt for EMID1 Gene

Orthologs for EMID1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for EMID1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia EMID1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia EMID1 36
  • 80 (a)
OneToOne
dog
(Canis familiaris)
Mammalia EMID1 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Emid1 35
  • 83.33 (n)
  • 80 (a)
Emid1 16
Emid1 36
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia EMID1 36
  • 66 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia EMID1 36
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Emid1 35
  • 87.97 (n)
  • 86.83 (a)
chicken
(Gallus gallus)
Aves EMID1 36
  • 57 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 3 (a)
ManyToMany
African clawed frog
(Xenopus laevis)
Amphibia MGC68894 35
tropical clawed frog
(Silurana tropicalis)
Amphibia emid1 35
  • 57.52 (n)
  • 52.45 (a)
zebrafish
(Danio rerio)
Actinopterygii emid1 36
  • 46 (a)
OneToOne
Species with no ortholog for EMID1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for EMID1 Gene

ENSEMBL:
Gene Tree for EMID1 (if available)
TreeFam:
Gene Tree for EMID1 (if available)

Paralogs for EMID1 Gene

Paralogs for EMID1 Gene

Selected SIMAP similar genes for EMID1 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with EMID1: view

Variants for EMID1 Gene

Sequence variations from dbSNP and Humsavar for EMID1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs132370 -- 29,207,807(+) CAGTC(A/G)ATTTC intron-variant
rs132371 -- 29,208,286(+) GTCCT(C/G)GGGAG intron-variant
rs132372 -- 29,208,572(+) TCAGG(A/G)AGAAT intron-variant
rs132373 -- 29,208,798(+) CAAGC(C/T)GCTGG intron-variant
rs132374 -- 29,210,270(+) TTTTT(-/T)GAGAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EMID1 Gene

Variant ID Type Subtype PubMed ID
nsv524483 CNV Loss 19592680
nsv914958 CNV Loss 21882294
nsv522714 CNV Loss 19592680
nsv829154 CNV Gain 20364138
nsv834171 CNV Loss 17160897
nsv436349 CNV Deletion 17901297
esv2724121 CNV Deletion 23290073
esv2673780 CNV Deletion 23128226
esv22026 CNV Loss 19812545
esv2724122 CNV Deletion 23290073
esv1772608 CNV Deletion 17803354
esv275243 CNV Gain+Loss 21479260
nsv519651 CNV Loss 19592680

Relevant External Links for EMID1 Gene

HapMap Linkage Disequilibrium report
EMID1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EMID1 Gene

Disorders for EMID1 Gene

Relevant External Links for EMID1

Genetic Association Database (GAD)
EMID1
Human Genome Epidemiology (HuGE) Navigator
EMID1
genes like me logo Genes that share disorders with EMID1: view

No data available for UniProtKB/Swiss-Prot for EMID1 Gene

Publications for EMID1 Gene

  1. Developmental expression and biochemical characterization of Emu family members. (PMID: 12221002) Leimeister C. … Gessler M. (Dev. Biol. 2002) 2 3 4
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 48
  5. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 3

Products for EMID1 Gene

Sources for EMID1 Gene

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