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Aliases for EMCN Gene

Aliases for EMCN Gene

  • Endomucin 2 3 5
  • Gastric Cancer Antigen Ga34 3 4
  • Endomucin-2 3 4
  • Mucin-14 3 4
  • MUC-14 3 4
  • EMCN2 3 4
  • MUC14 3 4

External Ids for EMCN Gene

Previous GeneCards Identifiers for EMCN Gene

  • GC04M101629
  • GC04M101777
  • GC04M101676
  • GC04M101316
  • GC04M097054

Summaries for EMCN Gene

Entrez Gene Summary for EMCN Gene

  • EMCN is a mucin-like sialoglycoprotein that interferes with the assembly of focal adhesion complexes and inhibits interaction between cells and the extracellular matrix (Kinoshita et al., 2001 [PubMed 11418125]).[supplied by OMIM, Mar 2008]

GeneCards Summary for EMCN Gene

EMCN (Endomucin) is a Protein Coding gene.

UniProtKB/Swiss-Prot for EMCN Gene

  • Endothelial sialomucin, also called endomucin or mucin-like sialoglycoprotein, which interferes with the assembly of focal adhesion complexes and inhibits interaction between cells and the extracellular matrix.

Gene Wiki entry for EMCN Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EMCN Gene

Genomics for EMCN Gene

Regulatory Elements for EMCN Gene

Genomic Location for EMCN Gene

Chromosome:
4
Start:
100,395,341 bp from pter
End:
100,880,126 bp from pter
Size:
484,786 bases
Orientation:
Minus strand

Genomic View for EMCN Gene

Genes around EMCN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EMCN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EMCN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EMCN Gene

Proteins for EMCN Gene

  • Protein details for EMCN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9ULC0-MUCEN_HUMAN
    Recommended name:
    Endomucin
    Protein Accession:
    Q9ULC0
    Secondary Accessions:
    • A8K716
    • B4E347
    • Q8NEY5
    • Q8WWE7
    • Q9NRM8

    Protein attributes for EMCN Gene

    Size:
    261 amino acids
    Molecular mass:
    27452 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for EMCN Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for EMCN Gene

Proteomics data for EMCN Gene at MOPED

Post-translational modifications for EMCN Gene

  • Highly O-glycosylated. Sialic acid-rich glycoprotein.
  • Glycosylation at Asn 19, Asn 28, Asn 98, Asn 104, Asn 164, and Asn 178
  • Modification sites at PhosphoSitePlus

Other Protein References for EMCN Gene

Antibody Products

No data available for DME Specific Peptides for EMCN Gene

Domains & Families for EMCN Gene

Gene Families for EMCN Gene

HGNC:

Protein Domains for EMCN Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for EMCN Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with EMCN: view

No data available for UniProtKB/Swiss-Prot for EMCN Gene

Function for EMCN Gene

Molecular function for EMCN Gene

UniProtKB/Swiss-Prot Function:
Endothelial sialomucin, also called endomucin or mucin-like sialoglycoprotein, which interferes with the assembly of focal adhesion complexes and inhibits interaction between cells and the extracellular matrix.

Animal Model Products

  • Taconic Biosciences Mouse Models for EMCN

miRNA for EMCN Gene

miRTarBase miRNAs that target EMCN

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for EMCN Gene

Localization for EMCN Gene

Subcellular locations from UniProtKB/Swiss-Prot for EMCN Gene

Isoform 1: Cell membrane; Single-pass type I membrane protein. Membrane; Single-pass type I membrane protein. Note=Consistently localized to the plasma membrane and less abundantly to Golgi-like perinuclear stacks.
Isoform 2: Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for EMCN Gene COMPARTMENTS Subcellular localization image for EMCN gene
Compartment Confidence
plasma membrane 5
extracellular 4
cytosol 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for EMCN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005886 plasma membrane IEA --
genes like me logo Genes that share ontologies with EMCN: view

Pathways & Interactions for EMCN Gene

SuperPathways for EMCN Gene

No Data Available

Interacting Proteins for EMCN Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000296420%0d%0a9606.ENSP00000206542%0d%0a9606.ENSP00000236147%0d%0a
Selected Interacting proteins: Q9ULC0-MUCEN_HUMAN ENSP00000296420 for EMCN Gene via I2D STRING

Gene Ontology (GO) - Biological Process for EMCN Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EMCN Gene

Drugs & Compounds for EMCN Gene

No Compound Related Data Available

Transcripts for EMCN Gene

Unigene Clusters for EMCN Gene

Endomucin:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EMCN Gene

No ASD Table

Relevant External Links for EMCN Gene

GeneLoc Exon Structure for
EMCN
ECgene alternative splicing isoforms for
EMCN

Expression for EMCN Gene

mRNA expression in normal human tissues for EMCN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for EMCN Gene

This gene is overexpressed in Serum (40.2) and Heart (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for EMCN Gene



SOURCE GeneReport for Unigene cluster for EMCN Gene Hs.152913

mRNA Expression by UniProt/SwissProt for EMCN Gene

Q9ULC0-MUCEN_HUMAN
Tissue specificity: Expressed in heart, kidney and lung.
genes like me logo Genes that share expression patterns with EMCN: view

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and Protein tissue co-expression partners for EMCN Gene

Orthologs for EMCN Gene

This gene was present in the common ancestor of chordates.

Orthologs for EMCN Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia EMCN 35
  • 72.8 (n)
  • 60.8 (a)
EMCN 36
  • 59 (a)
OneToOne
dog
(Canis familiaris)
Mammalia EMCN 35
  • 81.17 (n)
  • 70 (a)
EMCN 36
  • 58 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Emcn 35
  • 68.48 (n)
  • 54.09 (a)
Emcn 16
Emcn 36
  • 51 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia EMCN 35
  • 96.51 (n)
  • 94.33 (a)
EMCN 36
  • 93 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Emcn 35
  • 66.8 (n)
  • 55.87 (a)
oppossum
(Monodelphis domestica)
Mammalia EMCN 36
  • 35 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia EMCN 36
  • 35 (a)
OneToOne
chicken
(Gallus gallus)
Aves EMCN 36
  • 23 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia EMCN 36
  • 24 (a)
OneToOne
Species with no ortholog for EMCN:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for EMCN Gene

ENSEMBL:
Gene Tree for EMCN (if available)
TreeFam:
Gene Tree for EMCN (if available)

Paralogs for EMCN Gene

No data available for Paralogs for EMCN Gene

Variants for EMCN Gene

Sequence variations from dbSNP and Humsavar for EMCN Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs4071 -- 100,398,008(-) TTCTC(A/G)GTGTT utr-variant-3-prime
rs242596 -- 100,461,935(-) GATTA(A/G)TGGAT intron-variant
rs168571 -- 100,467,454(-) TGATC(C/T)GCCCG intron-variant
rs171428 -- 100,434,660(+) cacat(A/C)aaaaa intron-variant
rs171429 -- 100,456,543(-) agttt(G/T)aactg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EMCN Gene

Variant ID Type Subtype PubMed ID
dgv5664n71 CNV Loss 21882294
nsv521801 CNV Loss 19592680
esv2434052 CNV Deletion 19546169
esv2728039 CNV Deletion 23290073
esv2728041 CNV Deletion 23290073
esv2670161 CNV Deletion 23128226
esv1322255 CNV Deletion 17803354
esv2422310 CNV Deletion 17116639

Variation tolerance for EMCN Gene

Residual Variation Intolerance Score: 64.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.87; 89.70% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for EMCN Gene

HapMap Linkage Disequilibrium report
EMCN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EMCN Gene

Disorders for EMCN Gene

Relevant External Links for EMCN

Genetic Association Database (GAD)
EMCN
Human Genome Epidemiology (HuGE) Navigator
EMCN
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EMCN

No disorders were found for EMCN Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EMCN Gene

Publications for EMCN Gene

  1. Identification of human endomucin-1 and -2 as membrane-bound O- sialoglycoproteins with anti-adhesive activity. (PMID: 11418125) Kinoshita M. … Noda M. (FEBS Lett. 2001) 2 3 4 23 67
  2. Human endomucin is an endothelial marker. (PMID: 11594763) Liu C. … Nguyen M. (Biochem. Biophys. Res. Commun. 2001) 2 3 23
  3. Endomucin, a sialomucin expressed in high endothelial venules, supports L-selectin-mediated rolling. (PMID: 15249540) Kanda H. … Miyasaka M. (Int. Immunol. 2004) 3 23
  4. Expression of endomucin, a novel endothelial sialomucin, in normal and diseased human skin. (PMID: 12485444) Kuhn A. … Vestweber D. (J. Invest. Dermatol. 2002) 3 23
  5. Human endomucin: distribution pattern, expression on high endothelial venules, and decoration with the MECA-79 epitope. (PMID: 12000719) Samulowitz U. … Vestweber D. (Am. J. Pathol. 2002) 3 23

Products for EMCN Gene

Sources for EMCN Gene

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