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Aliases for EMC8 Gene

Aliases for EMC8 Gene

  • ER Membrane Protein Complex Subunit 8 2 3
  • Neighbor Of COX4 2 3 4
  • NOC4 3 4 6
  • COX4 Neighbor 2 3
  • C16orf2 3 4
  • C16orf4 3 4
  • FAM158B 3 4
  • COX4NB 3 4
  • Family With Sequence Similarity 158, Member B 3
  • Family With Sequence Similarity 158 2
  • Chromosome 16 Open Reading Frame 4 2
  • Chromosome 16 Open Reading Frame 2 2
  • Protein FAM158B 4
  • Member B 2
  • COX4AL 4

External Ids for EMC8 Gene

Previous Symbols for EMC8 Gene

  • C16orf4
  • NOC4
  • C16orf2
  • COX4NB

Summaries for EMC8 Gene

GeneCards Summary for EMC8 Gene

EMC8 (ER Membrane Protein Complex Subunit 8) is a Protein Coding gene. An important paralog of this gene is EMC9.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EMC8 Gene

Genomics for EMC8 Gene

Genomic Location for EMC8 Gene

Start:
85,771,758 bp from pter
End:
85,799,608 bp from pter
Size:
27,851 bases
Orientation:
Minus strand

Genomic View for EMC8 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for EMC8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EMC8 Gene

No data available for Regulatory Elements for EMC8 Gene

Proteins for EMC8 Gene

  • Protein details for EMC8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O43402-EMC8_HUMAN
    Recommended name:
    ER membrane protein complex subunit 8
    Protein Accession:
    O43402
    Secondary Accessions:
    • C9JB21

    Protein attributes for EMC8 Gene

    Size:
    210 amino acids
    Molecular mass:
    23773 Da
    Quaternary structure:
    • Component of the ER membrane protein complex (EMC).

    Alternative splice isoforms for EMC8 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for EMC8 Gene

Proteomics data for EMC8 Gene at MOPED

Post-translational modifications for EMC8 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys100 and Lys110

Other Protein References for EMC8 Gene

No data available for DME Specific Peptides for EMC8 Gene

Domains for EMC8 Gene

Protein Domains for EMC8 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

EMC8_HUMAN
Family:
  • Belongs to the EMC8/EMC9 family.:
    • O43402
genes like me logo Genes that share domains with EMC8: view

No data available for Gene Families for EMC8 Gene

Function for EMC8 Gene

Phenotypes for EMC8 Gene

genes like me logo Genes that share phenotypes with EMC8: view

miRNA for EMC8 Gene

miRTarBase miRNAs that target EMC8

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for EMC8 Gene

Localization for EMC8 Gene

Subcellular locations from UniProtKB/Swiss-Prot for EMC8 Gene

Cytoplasm.

Gene Ontology (GO) - Cellular Components for EMC8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus TAS 10337626
GO:0005737 cytoplasm IDA --
GO:0005739 mitochondrion IEA --
GO:0016020 membrane IDA 19946888
GO:0072546 ER membrane protein complex IDA 22119785
genes like me logo Genes that share ontologies with EMC8: view

Pathways for EMC8 Gene

SuperPathways for EMC8 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EMC8 Gene

None

No data available for Pathways by source for EMC8 Gene

Transcripts for EMC8 Gene

Unigene Clusters for EMC8 Gene

ER membrane protein complex subunit 8:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EMC8 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b ^ 6
SP1: -
SP2:
SP3: - - -
SP4: -
SP5: - -
SP6:

Relevant External Links for EMC8 Gene

GeneLoc Exon Structure for
EMC8
ECgene alternative splicing isoforms for
EMC8

Expression for EMC8 Gene

mRNA expression in normal human tissues for EMC8 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for EMC8 Gene

SOURCE GeneReport for Unigene cluster for EMC8 Gene Hs.173162

mRNA Expression by UniProt/SwissProt for EMC8 Gene

O43402-EMC8_HUMAN
Tissue specificity: Expressed in liver, pancreas, heart, lung, kidney, brain, skeletal muscle, and placenta. Expression levels are highest in pancreas and moderate in heart, skeletal muscle, and placenta
genes like me logo Genes that share expressions with EMC8: view

Orthologs for EMC8 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for EMC8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia COX4NB 36
  • 98.73 (n)
  • 100 (a)
COX4NB 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia EMC8 36
  • 92.7 (n)
  • 97.62 (a)
EMC8 37
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia EMC8 36
  • 93.33 (n)
  • 98.57 (a)
EMC8 37
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Emc8 36
  • 87.6 (n)
  • 93.24 (a)
Emc8 16
Emc8 37
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 92 (a)
OneToMany
-- 37
  • 91 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia EMC8 37
  • 90 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Emc8 36
  • 87.28 (n)
  • 93.72 (a)
chicken
(Gallus gallus)
Aves EMC8 36
  • 79.97 (n)
  • 85.22 (a)
EMC8 37
  • 84 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia EMC8 37
  • 77 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.4449 36
tropical clawed frog
(Silurana tropicalis)
Amphibia emc8 36
  • 71.45 (n)
  • 76.73 (a)
MGC75783 36
zebrafish
(Danio rerio)
Actinopterygii Dr.3514 36
emc8 36
  • 72.14 (n)
  • 70.65 (a)
emc8 37
  • 70 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG3501 37
  • 38 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F25H2.4 37
  • 27 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons emb2731 36
  • 43.26 (n)
  • 30.32 (a)
rice
(Oryza sativa)
Liliopsida Os04g0270200 36
  • 51.97 (n)
  • 34.95 (a)
Species with no ortholog for EMC8:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for EMC8 Gene

ENSEMBL:
Gene Tree for EMC8 (if available)
TreeFam:
Gene Tree for EMC8 (if available)

Paralogs for EMC8 Gene

Paralogs for EMC8 Gene

Selected SIMAP similar genes for EMC8 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with EMC8: view

Variants for EMC8 Gene

Sequence variations from dbSNP and Humsavar for EMC8 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs8587 -- 85,779,625(+) GCTAC(A/C)AGATA utr-variant-3-prime
rs9354 -- 85,779,727(-) TAAAG(C/T)TGTCC utr-variant-3-prime, reference, missense
rs96603 -- 85,781,491(+) AGTGA(C/T)GCAAT intron-variant
rs100812 -- 85,782,598(+) CCTCC(C/G)TTCCA intron-variant
rs301163 -- 85,779,920(+) GGCTT(A/G)TAACA intron-variant

Relevant External Links for EMC8 Gene

HapMap Linkage Disequilibrium report
EMC8

No data available for Structural Variations from Database of Genomic Variants (DGV) for EMC8 Gene

Disorders for EMC8 Gene

No disorders were found for EMC8 Gene.

No data available for UniProtKB/Swiss-Prot for EMC8 Gene

Publications for EMC8 Gene

  1. The 5-prime region of the COX4 gene contains a novel overlapping gene, NOC4. (PMID: 10337626) Bachman N.J. … Lomax M.I. (Mamm. Genome 1999) 2 3 4 23
  2. Defining human ERAD networks through an integrative mapping strategy. (PMID: 22119785) Christianson J.C. … Kopito R.R. (Nat. Cell Biol. 2012) 2 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  5. Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry. (PMID: 18781797) Meierhofer D. … Kaiser P. (J. Proteome Res. 2008) 3

Products for EMC8 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate EMC8
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for EMC8
    • Block miRNA regulation of EMC8 using miScript Target Protectors

    Sources for EMC8 Gene

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