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Aliases for EMBP1 Gene

Aliases for EMBP1 Gene

  • Embigin Pseudogene 1 2 3 5

External Ids for EMBP1 Gene

Previous GeneCards Identifiers for EMBP1 Gene

  • GC01P121262
  • GC01P118581

Summaries for EMBP1 Gene

GeneCards Summary for EMBP1 Gene

EMBP1 (Embigin Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EMBP1 Gene

Genomics for EMBP1 Gene

Regulatory Elements for EMBP1 Gene

Enhancers for EMBP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G121518 1 ENCODE 0.7 +0.2 212 1.9 FOXA2 ZNF493 ZNF133 DMAP1 ZNF2 ZNF48 GLIS2 KLF7 SP3 YY2 HIST2H2BA ENSG00000227082 GC01M121519 EMBP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EMBP1 on UCSC Golden Path with GeneCards custom track

Promoters for EMBP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000012636 388 1001 FOXA2 ZNF493 ZNF133 DMAP1 ZNF2 ZNF48 GLIS2 KLF7 SP3 YY2

Genomic Location for EMBP1 Gene

Chromosome:
1
Start:
121,519,112 bp from pter
End:
121,571,892 bp from pter
Size:
52,781 bases
Orientation:
Plus strand

Genomic View for EMBP1 Gene

Genes around EMBP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EMBP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EMBP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EMBP1 Gene

Proteins for EMBP1 Gene

Post-translational modifications for EMBP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EMBP1 Gene

Domains & Families for EMBP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EMBP1 Gene

Function for EMBP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EMBP1 Gene

Localization for EMBP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EMBP1 Gene

Pathways & Interactions for EMBP1 Gene

SuperPathways for EMBP1 Gene

No Data Available

Interacting Proteins for EMBP1 Gene

Gene Ontology (GO) - Biological Process for EMBP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EMBP1 Gene

Transcripts for EMBP1 Gene

mRNA/cDNA for EMBP1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EMBP1 Gene

Embigin pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EMBP1 Gene

No ASD Table

Relevant External Links for EMBP1 Gene

GeneLoc Exon Structure for
EMBP1
ECgene alternative splicing isoforms for
EMBP1

Expression for EMBP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EMBP1 Gene

mRNA differential expression in normal tissues according to GTEx for EMBP1 Gene

This gene is overexpressed in Liver (x8.1) and Whole Blood (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of EMBP1 Gene:

EMBP1

SOURCE GeneReport for Unigene cluster for EMBP1 Gene:

Hs.697682
genes like me logo Genes that share expression patterns with EMBP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EMBP1 Gene

Orthologs for EMBP1 Gene

Evolution for EMBP1 Gene

ENSEMBL:
Gene Tree for EMBP1 (if available)
TreeFam:
Gene Tree for EMBP1 (if available)

No data available for Orthologs for EMBP1 Gene

Paralogs for EMBP1 Gene

No data available for Paralogs for EMBP1 Gene

Variants for EMBP1 Gene

Sequence variations from dbSNP and Humsavar for EMBP1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1001521285 -- 121,517,175(+) CCACC(A/C)AACTC upstream-variant-2KB
rs1002181466 -- 121,532,144(+) TCCCA(A/G)AATGC intron-variant
rs1005550901 -- 121,517,165(+) GTCAC(A/C)GAGCC upstream-variant-2KB
rs1008812364 -- 121,538,317(+) CTTCC(C/T)TGCAG intron-variant
rs1014295654 -- 121,532,169(+) TGAGC(C/T)ACTAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EMBP1 Gene

Variant ID Type Subtype PubMed ID
dgv308n100 CNV gain 25217958
dgv309n100 CNV gain 25217958
dgv310n100 CNV gain 25217958
dgv311n100 CNV gain 25217958
dgv31n27 CNV gain 19166990
dgv37e214 CNV gain 21293372
dgv527n54 CNV gain 21841781
dgv6e55 CNV gain 17911159
dgv86e212 CNV gain 25503493
esv2761521 CNV gain 21179565
esv3578137 CNV loss 25503493
nsv521003 CNV gain 19592680
nsv524681 CNV gain 19592680
nsv547634 CNV gain 21841781
nsv547635 CNV gain 21841781
nsv946206 CNV duplication 23825009

Relevant External Links for EMBP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EMBP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EMBP1 Gene

Disorders for EMBP1 Gene

Relevant External Links for EMBP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EMBP1

No disorders were found for EMBP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EMBP1 Gene

Publications for EMBP1 Gene

  1. Large-scale genotyping identifies 41 new loci associated with breast cancer risk. (PMID: 23535729) Michailidou K. … Easton D.F. (Nat. Genet. 2013) 3 64
  2. A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1). (PMID: 19330030) Thomas G. … Hunter D.J. (Nat. Genet. 2009) 3 64

Products for EMBP1 Gene

Sources for EMBP1 Gene

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