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Aliases for ELOA3B Gene

Aliases for ELOA3B Gene

  • Elongin A3 Family Member B 2 3
  • Transcription Elongation Factor B Subunit 3C Like 2 3 5
  • Transcription Elongation Factor B Polypeptide 3C-Like 2 3
  • TCEB3CL 3 5
  • RNA Polymerase II Transcription Factor SIII Subunit A3-Like-1 3
  • Transcription Elongation Factor B Polypeptide 3C-Like-1 3
  • Elongin A3 Like 1 3
  • EloA3-Like-1 3
  • ELOA3L1 3
  • HsT828 3

External Ids for ELOA3B Gene

Previous HGNC Symbols for ELOA3B Gene

  • TCEB3CL

Summaries for ELOA3B Gene

GeneCards Summary for ELOA3B Gene

ELOA3B (Elongin A3 Family Member B) is a Protein Coding gene. Diseases associated with ELOA3B include Dermatophytosis. Among its related pathways are HIV Life Cycle and Gene Expression. An important paralog of this gene is ELOA3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ELOA3B Gene

Genomics for ELOA3B Gene

Genomic Location for ELOA3B Gene

Chromosome:
18
Start:
46,968,695 bp from pter
End:
46,969,912 bp from pter
Size:
1,218 bases
Orientation:
Minus strand

Genomic View for ELOA3B Gene

Genes around ELOA3B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ELOA3B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ELOA3B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ELOA3B Gene

No data available for Regulatory Elements for ELOA3B Gene

Proteins for ELOA3B Gene

  • Protein details for ELOA3B Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J2C8
    Recommended name:
    Protein LOC101930165
    Protein Accession:
    A0A0B4J2C8

    Protein attributes for ELOA3B Gene

    Size:
    546 amino acids
    Molecular mass:
    59760 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ELOA3B Gene

Post-translational modifications for ELOA3B Gene

No Post-translational modifications

Other Protein References for ELOA3B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ELOA3B Gene

Domains & Families for ELOA3B Gene

Protein Domains for ELOA3B Gene

Suggested Antigen Peptide Sequences for ELOA3B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ELOA3B: view

No data available for Gene Families and UniProtKB/Swiss-Prot for ELOA3B Gene

Function for ELOA3B Gene

Phenotypes for ELOA3B Gene

genes like me logo Genes that share phenotypes with ELOA3B: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ELOA3B Gene

Localization for ELOA3B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ELOA3B gene
Compartment Confidence
nucleus 5
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for ELOA3B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0016021 integral component of membrane IEA --
GO:0070449 elongin complex IBA --
genes like me logo Genes that share ontologies with ELOA3B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ELOA3B Gene

Pathways & Interactions for ELOA3B Gene

genes like me logo Genes that share pathways with ELOA3B: view

Interacting Proteins for ELOA3B Gene

Gene Ontology (GO) - Biological Process for ELOA3B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006368 transcription elongation from RNA polymerase II promoter IBA --
genes like me logo Genes that share ontologies with ELOA3B: view

No data available for SIGNOR curated interactions for ELOA3B Gene

Transcripts for ELOA3B Gene

mRNA/cDNA for ELOA3B Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ELOA3B Gene

No ASD Table

Relevant External Links for ELOA3B Gene

GeneLoc Exon Structure for
ELOA3B
ECgene alternative splicing isoforms for
ELOA3B

Expression for ELOA3B Gene

NURSA nuclear receptor signaling pathways regulating expression of ELOA3B Gene:

ELOA3B

SOURCE GeneReport for Unigene cluster for ELOA3B Gene:

Hs.745535
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ELOA3B Gene

Orthologs for ELOA3B Gene

Evolution for ELOA3B Gene

ENSEMBL:
Gene Tree for ELOA3B (if available)
TreeFam:
Gene Tree for ELOA3B (if available)

No data available for Orthologs for ELOA3B Gene

Paralogs for ELOA3B Gene

Paralogs for ELOA3B Gene

genes like me logo Genes that share paralogs with ELOA3B: view

Variants for ELOA3B Gene

Sequence variations from dbSNP and Humsavar for ELOA3B Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs138564494 -- 47,025,510(+) TGTGT(-/TGTG)GTGTG intron-variant, upstream-variant-2KB
rs139200050 -- 47,025,503(+) TCTCA(-/GT)GTGTG intron-variant, upstream-variant-2KB
rs139462441 -- 47,025,403(+) ACAGA(A/C)CCATT intron-variant, upstream-variant-2KB
rs139532054 -- 47,025,502(+) CTCTC(A/T)GTGTG intron-variant, upstream-variant-2KB
rs139808744 -- 47,025,062(+) GGCCC(A/T)GCAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ELOA3B Gene

Variant ID Type Subtype PubMed ID
esv2717039 CNV deletion 23290073
esv3583040 CNV loss 25503493
nsv1056744 CNV gain 25217958
nsv1149591 CNV duplication 26484159
nsv2284 CNV insertion 18451855
nsv471406 CNV gain 19718026
nsv509693 CNV insertion 20534489
nsv576818 CNV loss 21841781
nsv833639 CNV loss 17160897
nsv833640 CNV loss 17160897
nsv9629 CNV gain+loss 18304495

Variation tolerance for ELOA3B Gene

Gene Damage Index Score: 0.05; 1.08% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ELOA3B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ELOA3B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ELOA3B Gene

Disorders for ELOA3B Gene

MalaCards: The human disease database

(1) MalaCards diseases for ELOA3B Gene - From: DISEASES

Disorder Aliases PubMed IDs
dermatophytosis
  • tinea
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for ELOA3B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ELOA3B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ELOA3B
genes like me logo Genes that share disorders with ELOA3B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ELOA3B Gene

Publications for ELOA3B Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ELOA3B Gene

Sources for ELOA3B Gene

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