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Aliases for ELMSAN1 Gene

Aliases for ELMSAN1 Gene

  • ELM2 And Myb/SANT-Like Domain Containing 1 2 3
  • C14orf117 3 4
  • C14orf43 3 4
  • ELM2 And SANT Domain-Containing Protein 1 3
  • Chromosome 14 Open Reading Frame 117 2
  • Chromosome 14 Open Reading Frame 43 2
  • C14_5541 3
  • MIDEAS 4
  • LSR68 3

External Ids for ELMSAN1 Gene

Previous HGNC Symbols for ELMSAN1 Gene

  • C14orf117
  • C14orf43

Previous GeneCards Identifiers for ELMSAN1 Gene

  • GC14M074184

Summaries for ELMSAN1 Gene

GeneCards Summary for ELMSAN1 Gene

ELMSAN1 (ELM2 And Myb/SANT-Like Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include chromatin binding. An important paralog of this gene is ZNF541.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ELMSAN1 Gene

Genomics for ELMSAN1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ELMSAN1 Gene

Start:
73,715,122 bp from pter
End:
73,790,285 bp from pter
Size:
75,164 bases
Orientation:
Minus strand

Genomic View for ELMSAN1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ELMSAN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ELMSAN1 Gene

No data available for Regulatory Elements for ELMSAN1 Gene

Proteins for ELMSAN1 Gene

  • Protein details for ELMSAN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PJG2-EMSA1_HUMAN
    Recommended name:
    ELM2 and SANT domain-containing protein 1
    Protein Accession:
    Q6PJG2
    Secondary Accessions:
    • Q6PK13
    • Q6PK59
    • Q6ZS23

    Protein attributes for ELMSAN1 Gene

    Size:
    1045 amino acids
    Molecular mass:
    114989 Da
    Quaternary structure:
    • Interacts with DNTTIP1. Identified in a histone deacetylase complex that contains DNTTIP1, HDAC1 and ELMSAN1; this complex assembles into a tetramer that contains four copies of each protein chain (PubMed:25653165).
    SequenceCaution:
    • Sequence=AAH06511.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for ELMSAN1 Gene

Proteomics data for ELMSAN1 Gene at MOPED

Post-translational modifications for ELMSAN1 Gene

  • Ubiquitination at Lys843
  • Modification sites at PhosphoSitePlus

Other Protein References for ELMSAN1 Gene

No data available for DME Specific Peptides for ELMSAN1 Gene

Domains for ELMSAN1 Gene

Protein Domains for ELMSAN1 Gene

Graphical View of Domain Structure for InterPro Entry

Q6PJG2

UniProtKB/Swiss-Prot:

EMSA1_HUMAN :
  • Q6PJG2
Domain:
  • Contains 1 ELM2 domain.
  • Contains 1 SANT domain.
genes like me logo Genes that share domains with ELMSAN1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for ELMSAN1 Gene

Function for ELMSAN1 Gene

Gene Ontology (GO) - Molecular Function for ELMSAN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003682 chromatin binding IEA --
genes like me logo Genes that share ontologies with ELMSAN1: view

Phenotypes for ELMSAN1 Gene

GenomeRNAi human phenotypes for ELMSAN1:
genes like me logo Genes that share phenotypes with ELMSAN1: view

Animal Model Products

miRNA for ELMSAN1 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ELMSAN1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ELMSAN1 Gene

Localization for ELMSAN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ELMSAN1 Gene

Gene Ontology (GO) - Cellular Components for ELMSAN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with ELMSAN1: view

No data available for Subcellular locations from COMPARTMENTS for ELMSAN1 Gene

Pathways for ELMSAN1 Gene

SuperPathways for ELMSAN1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ELMSAN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ELMSAN1: view

No data available for Pathways by source for ELMSAN1 Gene

Transcripts for ELMSAN1 Gene

Unigene Clusters for ELMSAN1 Gene

ELM2 and Myb/SANT-like domain containing 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ELMSAN1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ELMSAN1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13
SP1: - - -
SP2: -
SP3: -
SP4:
SP5: -
SP6:

Relevant External Links for ELMSAN1 Gene

GeneLoc Exon Structure for
ELMSAN1
ECgene alternative splicing isoforms for
ELMSAN1

Expression for ELMSAN1 Gene

mRNA expression in normal human tissues for ELMSAN1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for ELMSAN1 Gene

This gene is overexpressed in Pancreatic juice (16.2), Peripheral blood mononuclear cells (13.8), Lung (13.2), and CD8 Tcells (6.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ELMSAN1 Gene

SOURCE GeneReport for Unigene cluster for ELMSAN1 Gene Hs.594157

genes like me logo Genes that share expressions with ELMSAN1: view

Expression partners for ELMSAN1 Gene

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ELMSAN1 Gene

Orthologs for ELMSAN1 Gene

This gene was present in the common ancestor of animals.

Orthologs for ELMSAN1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ELMSAN1 35
  • 89.66 (n)
  • 90.43 (a)
ELMSAN1 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ELMSAN1 35
  • 89.71 (n)
  • 92.48 (a)
ELMSAN1 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Elmsan1 35
  • 85.53 (n)
  • 86.34 (a)
Elmsan1 16
Elmsan1 36
  • 80 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ELMSAN1 35
  • 99.55 (n)
  • 99.71 (a)
C14ORF43 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Elmsan1 35
  • 84.46 (n)
  • 84.98 (a)
oppossum
(Monodelphis domestica)
Mammalia ELMSAN1 36
  • 64 (a)
OneToOne
chicken
(Gallus gallus)
Aves C5H14ORF43 35
  • 60.74 (n)
  • 60.12 (a)
ELMSAN1 36
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ELMSAN1 36
  • 45 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia elmsan1 35
  • 56.33 (n)
  • 51.31 (a)
zebrafish
(Danio rerio)
Actinopterygii ELMSAN1 (1 of 2) 36
  • 30 (a)
OneToMany
ELMSAN1 (2 of 2) 36
  • 34 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG16779 36
  • 5 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea saeg-1 36
  • 9 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 23 (a)
OneToMany
Species with no ortholog for ELMSAN1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ELMSAN1 Gene

ENSEMBL:
Gene Tree for ELMSAN1 (if available)
TreeFam:
Gene Tree for ELMSAN1 (if available)

Paralogs for ELMSAN1 Gene

Paralogs for ELMSAN1 Gene

Selected SIMAP similar genes for ELMSAN1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with ELMSAN1: view

Variants for ELMSAN1 Gene

Sequence variations from dbSNP and Humsavar for ELMSAN1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs42975 -- 73,779,868(-) cgggc(A/G)cggtg intron-variant
rs42976 -- 73,779,834(-) tttgg(A/G)aggcc intron-variant
rs42977 -- 73,779,813(-) gatca(C/T)gaggt intron-variant
rs42978 -- 73,779,799(-) gagat(C/G)gagac intron-variant
rs42979 -- 73,779,760(-) ctcta(C/T)taaaa intron-variant

Relevant External Links for ELMSAN1 Gene

HapMap Linkage Disequilibrium report
ELMSAN1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ELMSAN1 Gene

Disorders for ELMSAN1 Gene

No disorders were found for ELMSAN1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ELMSAN1 Gene

Publications for ELMSAN1 Gene

  1. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4
  2. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R. … Weissenbach J. (Nature 2003) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for ELMSAN1 Gene

Sources for ELMSAN1 Gene

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