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Aliases for ELMO1 Gene

Aliases for ELMO1 Gene

  • Engulfment And Cell Motility 1 2 3 5
  • Engulfment And Cell Motility 1 (Ced-12 Homolog, C. Elegans) 2
  • Protein Ced-12 Homolog 4
  • Ced-12 Homolog 1 3
  • KIAA0281 4
  • CED-12 3
  • ELMO-1 3
  • CED12 3

External Ids for ELMO1 Gene

Previous GeneCards Identifiers for ELMO1 Gene

  • GC07M036540
  • GC07M036635
  • GC07M036667

Summaries for ELMO1 Gene

Entrez Gene Summary for ELMO1 Gene

  • This gene encodes a member of the engulfment and cell motility protein family. These proteins interact with dedicator of cytokinesis proteins to promote phagocytosis and cell migration. Increased expression of this gene and dedicator of cytokinesis 1 may promote glioma cell invasion, and single nucleotide polymorphisms in this gene may be associated with diabetic nephropathy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2013]

GeneCards Summary for ELMO1 Gene

ELMO1 (Engulfment And Cell Motility 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Immune System. GO annotations related to this gene include binding and SH3 domain binding. An important paralog of this gene is ELMO3.

UniProtKB/Swiss-Prot for ELMO1 Gene

  • Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Gene Wiki entry for ELMO1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ELMO1 Gene

Genomics for ELMO1 Gene

Regulatory Elements for ELMO1 Gene

Promoters for ELMO1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ELMO1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ELMO1 Gene

Chromosome:
7
Start:
36,852,906 bp from pter
End:
37,449,409 bp from pter
Size:
596,504 bases
Orientation:
Minus strand

Genomic View for ELMO1 Gene

Genes around ELMO1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ELMO1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ELMO1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ELMO1 Gene

Proteins for ELMO1 Gene

  • Protein details for ELMO1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q92556-ELMO1_HUMAN
    Recommended name:
    Engulfment and cell motility protein 1
    Protein Accession:
    Q92556
    Secondary Accessions:
    • A4D1X6
    • Q29R79
    • Q6ZTJ0
    • Q96PB0
    • Q9H0I1

    Protein attributes for ELMO1 Gene

    Size:
    727 amino acids
    Molecular mass:
    83829 Da
    Quaternary structure:
    • Interacts with ADGRB1 (By similarity). Interacts directly with the SH3-domain of DOCK1 via its SH3-binding site. Part of a complex with DOCK1 and RAC1. Part of a complex with DOCK1 and CRK isoform CRK-II. Interacts with PLEKHG6. Interacts with HCK (via SH3 domain). Interacts with ADGRB3 (PubMed:24567399).
    SequenceCaution:
    • Sequence=BAA13397.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ELMO1 Gene

    Alternative splice isoforms for ELMO1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ELMO1 Gene

Proteomics data for ELMO1 Gene at MOPED

Post-translational modifications for ELMO1 Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for ELMO1 (ELMO1)

No data available for DME Specific Peptides for ELMO1 Gene

Domains & Families for ELMO1 Gene

Gene Families for ELMO1 Gene

Protein Domains for ELMO1 Gene

Graphical View of Domain Structure for InterPro Entry

Q92556

UniProtKB/Swiss-Prot:

ELMO1_HUMAN :
  • Contains 1 ELMO domain.
Domain:
  • Contains 1 ELMO domain.
  • Contains 1 PH domain.
genes like me logo Genes that share domains with ELMO1: view

Function for ELMO1 Gene

Molecular function for ELMO1 Gene

UniProtKB/Swiss-Prot Function:
Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.
genes like me logo Genes that share phenotypes with ELMO1: view

Animal Models for ELMO1 Gene

MGI Knock Outs for ELMO1:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ELMO1 Gene

Localization for ELMO1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ELMO1 Gene

Cytoplasm. Cell membrane. Note=Translocation to plasma membrane seems to be mediated by DOCK1 and CRK.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ELMO1 Gene COMPARTMENTS Subcellular localization image for ELMO1 gene
Compartment Confidence
cytosol 5
plasma membrane 5
cytoskeleton 3
nucleus 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for ELMO1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with ELMO1: view

Pathways & Interactions for ELMO1 Gene

genes like me logo Genes that share pathways with ELMO1: view

SIGNOR curated interactions for ELMO1 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for ELMO1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006909 phagocytosis IEA --
GO:0006915 apoptotic process NAS 11595183
GO:0006928 movement of cell or subcellular component IGI 11595183
GO:0016032 viral process TAS --
GO:0016601 Rac protein signal transduction IGI 11595183
genes like me logo Genes that share ontologies with ELMO1: view

Drugs & Compounds for ELMO1 Gene

(3) Drugs for ELMO1 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanosine diphosphate Experimental Pharma 0
Guanosine monophosphate Experimental Pharma 0
Guanosine triphosphate Experimental Pharma 0
genes like me logo Genes that share compounds with ELMO1: view

Transcripts for ELMO1 Gene

Unigene Clusters for ELMO1 Gene

Engulfment and cell motility 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ELMO1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^
SP1: - - - - -
SP2: - -
SP3: -
SP4:
SP5: - -
SP6:
SP7:

ExUns: 25 ^ 26 ^ 27
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:

Relevant External Links for ELMO1 Gene

GeneLoc Exon Structure for
ELMO1
ECgene alternative splicing isoforms for
ELMO1

Expression for ELMO1 Gene

mRNA expression in normal human tissues for ELMO1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ELMO1 Gene

This gene is overexpressed in Lymph node (26.3) and Peripheral blood mononuclear cells (9.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for ELMO1 Gene



SOURCE GeneReport for Unigene cluster for ELMO1 Gene Hs.434989

mRNA Expression by UniProt/SwissProt for ELMO1 Gene

Q92556-ELMO1_HUMAN
Tissue specificity: Widely expressed, with a higher expression in the spleen and placenta.
genes like me logo Genes that share expression patterns with ELMO1: view

Protein tissue co-expression partners for ELMO1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for ELMO1 Gene

Orthologs for ELMO1 Gene

This gene was present in the common ancestor of animals.

Orthologs for ELMO1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ELMO1 35
  • 93.03 (n)
  • 99.59 (a)
ELMO1 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ELMO1 35
  • 92.8 (n)
  • 99.31 (a)
ELMO1 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Elmo1 35
  • 90.92 (n)
  • 99.59 (a)
Elmo1 16
Elmo1 36
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ELMO1 35
  • 99.72 (n)
  • 100 (a)
ELMO1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Elmo1 35
  • 91.1 (n)
  • 99.59 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 94 (a)
OneToMany
-- 36
  • 93 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia ELMO1 36
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves ELMO1 35
  • 83.13 (n)
  • 96.97 (a)
ELMO1 36
  • 97 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ELMO1 36
  • 94 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia elmo2 35
  • 78.5 (n)
  • 93.26 (a)
zebrafish
(Danio rerio)
Actinopterygii elmo1 35
  • 78.65 (n)
  • 89.53 (a)
elmo1 36
  • 89 (a)
OneToMany
ELMO1 (2 of 2) 36
  • 68 (a)
OneToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.12252 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009236 35
  • 56.29 (n)
  • 50.86 (a)
fruit fly
(Drosophila melanogaster)
Insecta Ced-12 35
  • 54.83 (n)
  • 49.21 (a)
Ced-12 36
  • 45 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ced-12 35
  • 40.64 (n)
  • 25.77 (a)
ced-12 36
  • 19 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 46 (a)
ManyToMany
-- 36
  • 59 (a)
ManyToMany
Species with no ortholog for ELMO1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ELMO1 Gene

ENSEMBL:
Gene Tree for ELMO1 (if available)
TreeFam:
Gene Tree for ELMO1 (if available)

Paralogs for ELMO1 Gene

Paralogs for ELMO1 Gene

(2) SIMAP similar genes for ELMO1 Gene using alignment to 9 proteins:

genes like me logo Genes that share paralogs with ELMO1: view

Variants for ELMO1 Gene

Sequence variations from dbSNP and Humsavar for ELMO1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
VAR_065824 -
rs14392 -- 36,854,746(-) GTCTC(G/T)CTCCA nc-transcript-variant, utr-variant-3-prime
rs752677 -- 37,063,110(+) CCAGT(A/T)CTCTT intron-variant
rs882500 -- 37,071,789(-) TTTTT(C/T)TTATT intron-variant
rs759480 -- 37,262,277(+) AATCC(A/C)ACAAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ELMO1 Gene

Variant ID Type Subtype PubMed ID
nsv5701 CNV Loss 18451855
esv7418 CNV Gain 19470904
esv6168 CNV Gain 19470904
esv2734261 CNV Deletion 23290073
esv2734263 CNV Deletion 23290073
esv2734264 CNV Deletion 23290073
nsv5702 CNV Insertion 18451855
nsv437544 CNV Loss 16327808
esv2734265 CNV Deletion 23290073
nsv5703 CNV Loss 18451855
dgv810n27 CNV Loss 19166990
nsv507384 CNV Insertion 20534489
nsv887958 CNV Loss 21882294
nsv824066 CNV Loss 20364138
esv2665995 CNV Deletion 23128226
esv2734266 CNV Deletion 23290073
esv2674526 CNV Deletion 23128226
nsv507385 CNV Insertion 20534489
esv1343363 CNV Insertion 17803354
esv1547828 CNV Deletion 17803354
nsv830961 CNV Gain 17160897
dgv420n21 CNV Loss 19592680
nsv523218 CNV Loss 19592680
nsv830962 CNV Gain 17160897
esv2671397 CNV Deletion 23128226
nsv818496 CNV Loss 17921354
nsv442039 CNV CNV 18776908
esv2734267 CNV Deletion 23290073
esv8354 CNV Loss 19470904
nsv366178 CNV Loss 16902084

Variation tolerance for ELMO1 Gene

Residual Variation Intolerance Score: 11.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.24; 24.92% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ELMO1 Gene

HapMap Linkage Disequilibrium report
ELMO1
Human Gene Mutation Database (HGMD)
ELMO1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ELMO1 Gene

Disorders for ELMO1 Gene

Relevant External Links for ELMO1

Genetic Association Database (GAD)
ELMO1
Human Genome Epidemiology (HuGE) Navigator
ELMO1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ELMO1

No disorders were found for ELMO1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ELMO1 Gene

Publications for ELMO1 Gene

  1. CED-12/ELMO, a novel member of the CrkII/Dock180/Rac pathway, is required for phagocytosis and cell migration. (PMID: 11595183) Gumienny T.L. … Ravichandran K.S. (Cell 2001) 2 3 4 67
  2. ELMO1 and Dock180, a bipartite Rac1 guanine nucleotide exchange factor, promote human glioma cell invasion. (PMID: 17671188) Jarzynka M.J. … Cheng S.Y. (Cancer Res. 2007) 3 23
  3. Elmo1 inhibits ubiquitylation of Dock180. (PMID: 16495483) Makino Y. … Tanaka S. (J. Cell. Sci. 2006) 3 23
  4. Cell corpse engulfment mediated by C. elegans phosphatidylserine receptor through CED-5 and CED-12. (PMID: 14645848) Wang X. … Xue D. (Science 2003) 3 23
  5. The bipartite rac1 Guanine nucleotide exchange factor engulfment and cell motility 1/dedicator of cytokinesis 180 (elmo1/dock180) protects endothelial cells from apoptosis in blood vessel development. (PMID: 25586182) SchAoker K. … Kroll J. (J. Biol. Chem. 2015) 3

Products for ELMO1 Gene

Sources for ELMO1 Gene

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