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Aliases & Descriptions for ELL
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| C19orf17 2, 3 | | DKFZp434I1916 2 | | ELL1 1, 2 | | MEN 2 | | Men 1 |
| | | Descriptions |
|---|
| ELL gene (11-19 lysine-rich leukemia gene) 2 | | Eleven-nineteen lysine-rich leukemia protein 3 | | chromosome 19 open reading frame 17 1 | | eleven-nineteen lysine-rich leukemia 2 | | elongation factor RNA polymerase II 2 |
|
| | Search outside databases for aliases for ELL genePrevious GC identifers: GC19M019048 GC19M018947 GC19M018399 GC19M018415 |
Summaries for ELL(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: ELL_HUMAN, P55199Function: Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNAGene Wiki entry for ELL |
Genomic Location for ELL
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ELL gene 
Entrez Gene cytogenetic band: 19p13.1 Ensembl cytogenetic band: 19p13.11 HGNC cytogenetic band: 19p13.1ELL Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19M018416:
(about GC identifiers)
Start:
|
18,414,473 bp from pter |
End:
|
18,493,918 bp from pter |
Size:
|
79,446 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000019.8 NT_011295.10
| Proteins for ELL
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ELL_HUMAN, P55199 (See
protein sequence)Recommended Name: RNA polymerase II elongation factor ELL Size: 621 amino acids; 68265 Da
Subunit: Interacts with EAF1 and EAF2
Subcellular location: Nucleus speckle. Nucleus, Cajal body. Note=Colocalizes with EAF2 to nuclear speckles. Also localized to Cajal (coiled) bodies
PDB structures from and Proteopedia :2DOA (3D)
 Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_006523.1
ENSEMBL proteins: ENSP00000262809 ENSP00000376196
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ELL 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ELL: Assays for ELL: | Protein
Domains/ Families for ELL(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P55199
ProtoNet protein and cluster: P55199 1 Blocks protein family: IPB010844 Occludin and RNA polymerase II elongation factor ELL
UniProtKB/Swiss-Prot: ELL_HUMAN, P55199Similarity: Belongs to the ELL/occludin family | Gene Function for ELL
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006532
Applied Biosystems Silencer® siRNAs for ELL
Sigma-Aldrich siRNA for ELL  Sigma-Aldrich shRNA for ELL  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006532                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006532                                  untagged cDNA clones in CMV expression vector (see all 2): BC010010 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006532
UniProtKB/Swiss-Prot: ELL_HUMAN, P55199Function: Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNAGenatlas biochemistry entry for ELL:eleven-nineteen lysine-rich leukemia gene,fused with HRX(MLL) in t(11;19) acute lymphoblastic leukemia1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Ell):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ELL
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for ELL 
5/53 Interacting proteins for ELL (ENSP000002628093 P551991) via UniProtKB, MINT, and/or STRING (see all 53
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006350 | transcription |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- | | GO:0006368 | RNA elongation from RNA polymerase II promoter |
TAS | 8596958 | About this table
|
Drugs & Compounds for ELL(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ELL
|
Transcripts for ELL(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006532
Sigma-Aldrich siRNA for ELL  Sigma-Aldrich shRNA for ELL  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_006532 REFSEQ mRNAs for ELL gene: NM_006532.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006532               OriGene GFP tagged cDNA clone in CMV expression vector: NM_006532                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006532                                  untagged cDNA clones in CMV expression vector (see all 2): BC010010  Additional cDNA sequence: AB208794.1 AF157562.1 AK225481.1 AK293105.1 AK309878.1 AL136771.1 BC010010.2 BC033673.1 BC049195.1 BC064558.1 BC108256.1 CR606202.1 S77880.1 S77889.1 U16282.1 8 DOTS entries: DT.100746195 DT.411268 DT.100739993 DT.121456731 DT.97841700 DT.91681518 DT.91731190 DT.75102546 24/166 AceView cDNA sequences (see all 166
):F11595 CA434042 NM_006532 BC064558 AI676084 BX100377 BE326983 CF131209 U16282 AL118983 BM680583 CF593337 BX417969 BM806318 BE514345 CR606202 BE293594 BF593292 BC049195 BQ008204 AL543671 BE293597 BM553152 BC033673
highest scoring ESTs for ELL:U16282 AI830319 AL118983 AL543671 AL557978 AL570404 BC049195 BE242864 BE514345 BF898251 Unigene Cluster for ELL: Elongation factor RNA polymerase II Hs.515260 [show with all ESTs]Unigene Representative Sequence: NM_006532
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for ELL
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b | ^ | 11 | ^ | 12a | · | 12b | ^ | 13 | ^ | 14a | · | 14b | · | 14c | |
| SP1: | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ELL
2 Ensembl transcripts including schematic representations: ENST00000262809
ENST00000392395
|
Expression for ELL
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ELL expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ELL
1 / 2 / 3 7 probe-sets matching ELL gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGGTTGGTGT
SOURCE GeneReport for Unigene cluster: Hs.515260
Expression variation in blood from EXPOLDB for ELL UniProtKB/Swiss-Prot: ELL_HUMAN, P55199Tissue specificity: Expressed in all tissues tested. Highest levels found in placenta, skeletal muscle, testis and peripheral blood leukocytes |
Orthologs for ELL
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ELL gene from 5/9 species (see all 9
)
About this table Species with no ortholog for ELL
ENSEMBL Gene Tree for ELL | Paralogs for ELL(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ELL gene
- ELL32 ELL22
|
SNPs/Variants for ELL(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ELL (up to first 250kb)
|
Disorders & Mutations for ELL
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600284
UniProtKB/Swiss-Prot: ELL_HUMAN, P55199
A chromosomal translocation involving ELL is found in acute leukemias. Translocation t(11;19)(q23;p13.1) with MLL/HRX. The result is a rogue activator protein5 Novoseek disease relationships for ELL gene
About this table
Human Gene Mutation Database: ELL
|
Medical News for ELL(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for ELL (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/48 PubMed articles for ELL gene (see all 48
):- An RNA polymerase II elongation factor encoded by the human ELL gene. (PubMed id 8596958)1, 2, 3, 4 Shilatifard A....Conaway J.W. (1996)
- Cloning of ELL, a gene that fuses to MLL in a t(11;19)(q23;p13.1) in acute myeloid leukemia. (PubMed id 7991593)2, 3, 4 Thirman M.J.... Rowley J.D. (1994)
- ELL-associated factors 1 and 2 are positive regulators of RNA polymerase II elongation factor ELL. (PubMed id 16006523)1, 3, 4 Kong S.E.... Conaway R.C. (2005)
- ELL-associated factor 2 (EAF2), a functional homolog of EAF1 with alternative ELL binding properties. (PubMed id 12446457)1, 3, 4 Simone F.... Thirman M.J. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- ELL and EAF1 are Cajal body components that are disrupted in MLL-ELL leukemia. (PubMed id 12686606)3, 4 Polak P.E.... Thirman M.J. (2003)
- EAF1, a novel ELL-associated factor that is delocalized by expression of the MLL-ELL fusion protein. (PubMed id 11418481)3, 4 Simone F....Thirman M.J. (2001)
- Structure and function of RNA polymerase II elongation factor ELL. Identification of two overlapping ELL functional domains that govern its interaction with polymerase and the ternary elongation complex. (PubMed id 9268387)1, 3 Shilatifard A....Conaway J.W. (1997)
- Identification and purification of the Holo-ELL complex. Evidence for the presence of ELL-associated proteins that suppress the transcriptional inhibitory activity of ELL. (PubMed id 9556611)1, 3 Shilatifard A. (1998)
- A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)4 Dephoure N.... Gygi S.P. (2008)
|
Search for ELL
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ELL
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ELL
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ELL(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ELL(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ELL:

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| | Recombinant Proteins (ELL) | | Antibodies (ELL) |
| | | Search Tocris compounds for ELL |
|
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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