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Aliases & Descriptions for ELK3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| ELK3 protein 2 | | ELK3, ETS-domain protein (SRF accessory protein 2) 2 | | ETS-domain protein 2 | | ETS-related protein ERP 3 | | ETS-related protein NET 3 | | SRF accessory protein 2 2, 3 |
|
| | Search outside databases for aliases for ELK3 genePrevious GC identifers: GC12P096023 GC12P096951 GC12P096521 |
Summaries for ELK3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ELK3: The protein encoded by this gene is a member of the ETS-domain transcription factor family and the ternary complex factor (TCF) subfamily. Proteins in this subfamily regulate transcription when recruited by serum response factor to bind to serum response elements. This protein is activated by signal-induced phosphorylation; studies in rodents suggest that it is a transcriptional inhibitor in the absence of Ras, but activates transcription when Ras is present. [provided by RefSeq] UniProtKB/Swiss-Prot: ELK3_HUMAN, P41970Function: May be a negative regulator of transcription, but can activate transcription when coexpressed with Ras, Src or Mos. Forms a ternary complex with the serum response factor and the ETS and SRF motifs of the Fos serum response elementGene Wiki entry for ELK3 |
Genomic Location for ELK3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ELK3 gene 
Entrez Gene cytogenetic band: 12q23 Ensembl cytogenetic band: 12q23.1 HGNC cytogenetic band: 12q23ELK3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12P095090:
(about GC identifiers)
Start:
|
95,112,338 bp from pter |
End:
|
95,185,740 bp from pter |
Size:
|
73,403 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000012.10 NT_019546.15
| Proteins for ELK3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ELK3_HUMAN, P41970 (See
protein sequence)Recommended Name: ETS domain-containing protein Elk-3 Size: 407 amino acids; 44240 Da
Subunit: Interacts with CTBP1
Subcellular location: Nucleus
Secondary accessions: Q6FG57 Q6GU29 Q9UD17Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005221.2
ENSEMBL proteins: ENSP00000228741
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ELK3 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ELK3: Assays for ELK3: | Protein
Domains/ Families for ELK3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P41970
ProtoNet protein and cluster: P41970 UniProtKB/Swiss-Prot: ELK3_HUMAN, P41970Similarity: Belongs to the ETS familySimilarity: Contains 1 ETS DNA-binding domain | Gene Function for ELK3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005230
Applied Biosystems Silencer® siRNAs for ELK3
Sigma-Aldrich siRNA for ELK3  Sigma-Aldrich shRNA for ELK3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005230                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005230                                  untagged cDNA clone in CMV expression vector: NM_005230 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005230
UniProtKB/Swiss-Prot: ELK3_HUMAN, P41970Function: May be a negative regulator of transcription, but can activate transcription when coexpressed with Ras, Src or Mos. Forms a ternary complex with the serum response factor and the ETS and SRF motifs of the Fos serum response elementGenatlas biochemistry entry for ELK3:ets related protooncogene 3,homologous to murine Net (Erp),ubiquitous but expressed primarily at early stages of B-lymphocyte development with a drastic decline,upon B-cell maturation,activated by RAS,divergent member of the winged helix-turn-helix superfamily6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Elk3):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ELK3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for ELK3 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for ELK3 
5/6 Interacting proteins for ELK3 (P419701 ENSP000002287413) via UniProtKB, MINT, and/or STRING (see all 6
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ELK3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Compounds for ELK3 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| XRP44X | Ras-Net pathway inhibitor | [729605-21-4] | About this table
|
Transcripts for ELK3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005230
Sigma-Aldrich siRNA for ELK3  Sigma-Aldrich shRNA for ELK3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005230 REFSEQ mRNAs for ELK3 gene: NM_005230.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005230               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005230                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005230                                  untagged cDNA clone in CMV expression vector: NM_005230  Additional cDNA sequence: AK026078.1 AK312694.1 BC017371.1 CR542251.1 Z36715.1 9 DOTS entries: DT.317487 DT.99932846 DT.40124776 DT.100044669 DT.121214954 DT.40204463 DT.40272038 DT.91938037 DT.100791197 24/205 AceView cDNA sequences (see all 205
):AI754275 BQ448099 AA921966 AW303921 BM921503 AI499197 CA393990 AW295741 AA983721 CR542251 AI077590 AK026078 BI091429 AI682746 F10001 CB852715 AA599413 BU902349 BU683844 NM_005230 AA724402 AA344225 CA418141 AA557143
highest scoring ESTs for ELK3:Z36715 AA029744 AA091123 AA262193 AA296894 AA577263 AA744497 AA912448 AI076964 AI077590 Unigene Cluster for ELK3: ELK3, ETS-domain protein (SRF accessory protein 2) Hs.46523 [show with all ESTs]Unigene Representative Sequence: NM_005230
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for ELK3
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b | · | 11c | |
| SP1: | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ELK3
1 Ensembl transcript including schematic representation: ENST00000228741
|
Expression for ELK3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ELK3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ELK3
1 / 2 / 3 8 probe-sets matching ELK3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGTGTGTTAG
SOURCE GeneReport for Unigene cluster: Hs.46523
Expression variation in blood from EXPOLDB for ELK3 |
Orthologs for ELK3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ELK3 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for ELK3
ENSEMBL Gene Tree for ELK3 | Paralogs for ELK3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ELK3 gene
- SPDEF2
|
SNPs/Variants for ELK3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ELK3 (up to first 250kb)
|
Disorders & Mutations for ELK3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600247
1 PharmGKB disease relationship for ELK3 geneAbout this table
|
Medical News for ELK3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ELK3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/26 PubMed articles for ELK3 gene (see all 26
):- Comparative analysis of the ternary complex factors Elk-1, SAP-1a and SAP-2 (ERP/NET). (PubMed id 7540136)1, 3, 4 Price M.A.... Treisman R. (1995)
- Mapping of the human SAP1 (SRF accessory protein 1) gene and SAP2, a gene encoding a related protein, to chromosomal bands 1q32 and 12q23, respectively. (PubMed id 7851904)1, 2, 3 Shipley J....Patel K. (1994)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)3, 4 Beausoleil S.A....Gygi S.P. (2004)
- Net, a new ets transcription factor that is activated by Ras. (PubMed id 7958835)3, 4 Giovane A.... Wasylyk B. (1994)
- Net (ERP/SAP2) one of the Ras-inducible TCFs, has a novel inhibitory domain with resemblance to the helix-loop-helix motif. (PubMed id 8918463)1, 3 Maira S.M....Wasylyk B. (1996)
- Growth inhibitory effect of the ternary complex factor Net on human pancreatic carcinoma cell lines. (PubMed id 18832796)3 Li B....Zhang Y. (2008)
- Inhibition of the Ras-Net (Elk-3) pathway by a novel pyrazole that affects microtubules. (PubMed id 18316589)3 Wasylyk C....Wasylyk B. (2008)
- Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)3 Barbe L....Andersson-Svahn H. (2008)
- Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976)4 Daub H.... Mann M. (2008)
|
Search for ELK3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ELK3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ELK3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ELK3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ELK3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ELK3:

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Incremental update: 13 Oct 2009
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