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Aliases & Descriptions for ELK1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases OTTHUMP00000023224 2 OTTHUMP00000023225 2
Descriptions ELK1 protein 2 ELK1, member of ETS oncogene family 2 ETS-like gene 1 2
Search outside databases for aliases for ELK1 genePrevious GC identifers: GC0XM046297 GC0XM045755 GC0XM046540 GC0XM047252
Summaries for ELK1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ELK1 : This gene is a member of the Ets family of transcription factors and of the ternary complex factor(TCF) subfamily. Proteins of the TCF subfamily form a ternary complex by binding to the the serumresponse factor and the serum reponse element in the promoter of the c-fos proto-oncogene. Theprotein encoded by this gene is a nuclear target for the ras-raf-MAPK signaling cascade.Alternatively spliced transcript variants encoding the same protein have been found for this gene.[provided by RefSeq] UniProtKB/Swiss-Prot: ELK1_HUMAN, P19419 Function : Stimulates transcription. Binds to purine-rich DNA sequences. Can form a ternary complexwith the serum response factor and the ETS and SRF motifs of the fos serum response element
Gene Wiki entry for ELK1
Genomic Location for ELK1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ELK1 gene Entrez Gene cytogenetic band: Xp11.2 Ensembl cytogenetic band: Xp11.23 HGNC cytogenetic band: Xp11.23 ELK1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XM047379:
(about GC identifiers )
Start:
47,379,864 bp from pter
End:
47,394,964 bp from pter
Size:
15,101 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000023.9 NT_079573.3 Proteins for ELK1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ELK1_HUMAN, P19419 (See
protein sequence )Recommended Name: ETS domain-containing protein Elk-1 Size : 428 amino acids; 44888 Da
Subunit : Interacts in its sumoylated form with PIAS2/PIASX which enhances its transcriptionalactivator activity
Subcellular location : Nucleus
PDB structures from and Proteopedia : 1DUX (3D)
 
Secondary accessions : O75606 O95058 Q969X8 Q9UJM4Alternative splicing : 2 isoforms : P19419-1 P19419-2
Post-translational modifications:
Sumoylation represses transcriptional activator activity as it results in recruitment of HDAC2 totarget gene promoters which leads to decreased histone acetylation and reduced transactivatoractivity. It also regulates nuclear retention1
On mitogenic stimulation, phosphorylated on C-terminal serine and threonine residues by MAPK1.Ser-383 and Ser-389 are the preferred sites for MAPK1. In vitro, phosphorylation by MAPK1potentiates ternary complex formation with the serum responses factors, SRE and SRF.Phosphorylation leads to loss of sumoylation and restores transcriptional activator activity1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001107595.1 NP_005220.2 ENSEMBL proteins: ENSP00000247161 ENSP00000345585 ENSP00000366182 ENSP00000366184 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for ELK1: Invitrogen Antibodies for ELK1 Millipore Mono- and Polyclonal Antibodies for the study of ELK1 Sigma-Aldrich Antibodies for ELK1 R&D Systems Antibodies for ELK1 (Elk-1) Cell Signaling Technology (CST) Antibodies for ELK1   (Elk-1) Antibodies from Abcam (ELK1 ), each with their Abpromise SM Monoclonal and Polyclonal Antibodies from Abnova (ELK1 ) Novus Biologicals Antibodies for ELK1
Assays for ELK1:
Protein
Domains/ Families for ELK1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P19419 ProtoNet protein and cluster: P19419
UniProtKB/Swiss-Prot: ELK1_HUMAN, P19419 Similarity : Belongs to the ETS familySimilarity : Contains 1 ETS DNA-binding domain
Gene Function for ELK1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
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Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001114123 Applied Biosystems Silencer ® siRNAs for ELK1 Sigma-Aldrich siRNA for ELK1 Sigma-Aldrich shRNA for ELK1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001114123                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001114123                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001114123  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001114123 UniProtKB/Swiss-Prot: ELK1_HUMAN, P19419 Function : Stimulates transcription. Binds to purine-rich DNA sequences. Can form a ternary complexwith the serum response factor and the ETS and SRF motifs of the fos serum response element
Genatlas biochemistry entry for ELK1 :ets related protooncogene 1,activated by several mitogen-activated protein kinases(MAPKs),associating with a ternary complex factor 1 and SRF transcription factor and recruited tothe c-fos serum response element,divergent member of the winged helix-turn-helix superfamily
3 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Elk1) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for ELK1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/41 Sigma-Aldrich "Your Favorite Gene" Pathways for ELK1 (Your Favorite Gene powered by Ingenuity) (see all 41
) Gene Network CentralTM Interacting Genes and Proteins Network for ELK1 5/35 Interacting proteins for ELK1 (P19419 1 , 2 ENSP00000366184 3 ) via UniProtKB, MINT, and/or STRING (see all 35
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006350 transcription
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0045944 positive regulation of transcription from RNA polymerase II promoter
IDA 14970218
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Drugs & Compounds for ELK1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ELK1 10/19 Novoseek chemical compound relationships for ELK1 gene (see all 19
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
pd 98,059
73.88
11
11701445 (1), 11208903 (1), 11166731 (1), 15607527 (1) (see all 9 )
sp 600125
53.58
3
19302787 (1), 19147541 (1)
phosphatidylinositol
43.12
3
11959812 (1), 10958680 (1), 12193575 (1)
tyrosine
38.60
7
16515541 (3), 8208531 (2), 11443118 (1), 10958680 (1)
12-o-tetradecanoylphorbol 13-acetate
29.60
6
9880563 (1), 11050045 (1), 10535756 (1)
threonine
29.47
2
8892757 (1), 8208531 (1)
wortmannin
29.32
1
15194438 (1)
bisindolylmaleimide
25.69
3
11943676 (1), 17146445 (1)
forskolin
15.81
5
9512670 (1), 10406459 (1), 9165004 (1)
ionomycin
8.88
3
9367995 (1), 11402055 (1)
About this table
Transcripts for ELK1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001114123 Sigma-Aldrich siRNA for ELK1 Sigma-Aldrich shRNA for ELK1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001114123 NM_005229
REFSEQ mRNAs for ELK1 gene (2 alternative transcripts): NM_001114123.1 NM_005229.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001114123 NM_005229
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001114123                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001114123                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001114123  
Additional cDNA sequence: AB016193.1 AB209047.1 AF000672.1 AK093966.1 AK312984.1 BC048296.1 BC056150.1 CR542252.1 CR598341.1 M25269.1
12 DOTS entries : DT.100785120 DT.100785119 DT.100785117 DT.100771256 DT.102843928 DT.213807 DT.95082760 DT.101959439 DT.121637185 DT.92432597 DT.97842842 DT.100035717
24/164 AceView cDNA sequences (see all 164
):CR598341 AI203709 AA655006 BU501322 BE293251 BX388204 AA831352 AA576028 CR542252 BI755351 AW305143 BF116169 BX367275 AL560620 BM699844 BM802647 BE877400 BM713955 BM475656 BX493565 CN478486 AA844141 BC056150 BE645946
highest scoring ESTs for ELK1 :M25269 AA134796 AB016193 AF000672 AL525431 AL556333 BC048296 BE787446 BE883422 BF953438
Unigene Cluster for ELK1: ELK1, member of ETS oncogene family Hs.181128 [show with all ESTs ] Unigene Representative Sequence: AB209047 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ELK1 (see all 6
) ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6 ^ 7a · 7b ^ 8 SP1 :       -     -     -                 SP2 :       -     -     -     -   -   -   -       SP3 :       -   -   -     -                 SP4 :                               SP5 :       -                        
About this scheme ECgene alternative splicing isoforms for ELK1 4 Ensembl transcripts including schematic representations : ENST00000247161
ENST00000343894
ENST00000376983
ENST00000376985
Expression for ELK1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ELK1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ELK1 1 / 2 / 3
10 probe-sets matching ELK1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AATTTTCAGTSOURCE GeneReport for Unigene cluster: Hs.181128 Expression variation in blood from EXPOLDB for ELK1
UniProtKB/Swiss-Prot: ELK1_HUMAN, P19419 Tissue specificity : Lung and testis
Orthologs for ELK1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ELK1 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for ELK1 ENSEMBL Gene Tree for ELK1 Paralogs for ELK1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ELK1 gene ETS2 2 GABPA 2 ETS1 2
SNPs/Variants for ELK1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ELK1 (up to first 250kb)
Disorders & Mutations for ELK1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 311040 10/13 Novoseek disease relationships for ELK1 gene (see all 13
)
About this table Human Gene Mutation Database : ELK1 Tumor Gene Database : ELK1
Medical News for ELK1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ELK1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/375 PubMed articles for ELK1 gene (see all 375
): elk, tissue-specific ets-related genes on chromosomes X and 14 near translocation breakpoints. (PubMed id 2539641) 2, 3, 4 Rao V.N....Reddy E.S.P. (1989) SUMOylation regulates nucleo-cytoplasmic shuttling of Elk-1. (PubMed id 15210726) 1, 3, 4 Salinas S.... Hipskind R.A. (2004) PIASx acts as an Elk-1 coactivator by facilitating derepression. (PubMed id 15920481) 1, 3, 4 Yang S.-H. and Sharrocks A.D. (2005) Elk-1 protein domains required for direct and SRF-assisted DNA- binding. (PubMed id 1630903) 1, 3, 4 Janknecht R. and Nordheim A. (1992) Dynamic interplay of the SUMO and ERK pathways in regulating Elk-1 transcriptional activity. (PubMed id 12887893) 1, 3, 4 Yang S.-H.... Sharrocks A.D. (2003) ERK phosphorylation potentiates Elk-1-mediated ternary complex formation and transactivation. (PubMed id 7889942) 1, 3, 4 Gille H.... Shaw P.E. (1995) Structure of the elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA. (PubMed id 10742173) 1, 3, 4 Mo Y.... Marmorstein R. (2000) Structural organization of the human Elk1 gene and its processed pseudogene Elk2. (PubMed id 10231026) 1, 3, 4 Yamauchi T....Isobe M. (1999) The human elk-1 gene family: the functional gene and two processed pseudogenes embedded in the IgH locus. (PubMed id 9795224) 1, 3, 4 Harindranath N.... Max E.E. (1998) The DNA sequence of the human X chromosome. (PubMed id 15772651) 3, 4 Ross M.T.... Bentley D.R. (2005)
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Genome Databases showing ELK1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ELK1
(According to HUGE )
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Specialized Databases showing ELK1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ELK1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ELK1:
Antibodies & Assays for ELK1   (Elk-1)
Recombinant Proteins (ELK1 ) Antibodies (ELK1 )
Search Tocris compounds for ELK1
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009