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Aliases for EIF4H Gene

Aliases for EIF4H Gene

  • Eukaryotic Translation Initiation Factor 4H 2 3 5
  • Williams-Beuren Syndrome Chromosome Region 1 2 3
  • WBSCR1 3 4
  • EIF-4H 3 4
  • WSCR1 3 4
  • Williams-Beuren Syndrome Chromosomal Region 1 Protein 4
  • KIAA0038 4

External Ids for EIF4H Gene

Previous HGNC Symbols for EIF4H Gene

  • WBSCR1

Previous GeneCards Identifiers for EIF4H Gene

  • GC07P073227
  • GC07P073588
  • GC07P069470

Summaries for EIF4H Gene

Entrez Gene Summary for EIF4H Gene

  • This gene encodes one of the translation initiation factors, which functions to stimulate the initiation of protein synthesis at the level of mRNA utilization. This gene is deleted in Williams syndrome, a multisystem developmental disorder caused by the deletion of contiguous genes at 7q11.23. Alternative splicing of this gene generates 2 transcript variants. [provided by RefSeq, Jul 2008]

GeneCards Summary for EIF4H Gene

EIF4H (Eukaryotic Translation Initiation Factor 4H) is a Protein Coding gene. Diseases associated with EIF4H include williams-beuren syndrome. Among its related pathways are Gene Expression and Transport to the Golgi and subsequent modification. GO annotations related to this gene include nucleic acid binding and RNA binding. An important paralog of this gene is EIF4B.

UniProtKB/Swiss-Prot for EIF4H Gene

  • Stimulates the RNA helicase activity of EIF4A in the translation initiation complex. Binds weakly mRNA.

Gene Wiki entry for EIF4H Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EIF4H Gene

Genomics for EIF4H Gene

Regulatory Elements for EIF4H Gene

Promoters for EIF4H Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around EIF4H on UCSC Golden Path with GeneCards custom track

Genomic Location for EIF4H Gene

Chromosome:
7
Start:
74,174,245 bp from pter
End:
74,197,101 bp from pter
Size:
22,857 bases
Orientation:
Plus strand

Genomic View for EIF4H Gene

Genes around EIF4H on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EIF4H Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EIF4H Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EIF4H Gene

Proteins for EIF4H Gene

  • Protein details for EIF4H Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15056-IF4H_HUMAN
    Recommended name:
    Eukaryotic translation initiation factor 4H
    Protein Accession:
    Q15056
    Secondary Accessions:
    • A8K3R1
    • D3DXF6
    • D3DXF8

    Protein attributes for EIF4H Gene

    Size:
    248 amino acids
    Molecular mass:
    27385 Da
    Quaternary structure:
    • Interacts with HHV-1 Vhs.
    SequenceCaution:
    • Sequence=BAA05063.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for EIF4H Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for EIF4H Gene

Proteomics data for EIF4H Gene at MOPED

Post-translational modifications for EIF4H Gene

  • Ubiquitination at Lys 245
  • Modification sites at PhosphoSitePlus

Other Protein References for EIF4H Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for EIF4H (EIF4H)

No data available for DME Specific Peptides for EIF4H Gene

Domains & Families for EIF4H Gene

Gene Families for EIF4H Gene

Protein Domains for EIF4H Gene

Suggested Antigen Peptide Sequences for EIF4H Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q15056

UniProtKB/Swiss-Prot:

IF4H_HUMAN :
  • Contains 1 RRM (RNA recognition motif) domain.
Domain:
  • Contains 1 RRM (RNA recognition motif) domain.
genes like me logo Genes that share domains with EIF4H: view

Function for EIF4H Gene

Molecular function for EIF4H Gene

UniProtKB/Swiss-Prot Function:
Stimulates the RNA helicase activity of EIF4A in the translation initiation complex. Binds weakly mRNA.

Gene Ontology (GO) - Molecular Function for EIF4H Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003723 RNA binding TAS 8812460
GO:0005515 protein binding IPI 16189514
GO:0008135 translation factor activity, RNA binding TAS 9516461
GO:0033592 RNA strand annealing activity IBA --
genes like me logo Genes that share ontologies with EIF4H: view
genes like me logo Genes that share phenotypes with EIF4H: view

Animal Model Products

miRNA for EIF4H Gene

miRTarBase miRNAs that target EIF4H

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for EIF4H Gene

Localization for EIF4H Gene

Subcellular locations from UniProtKB/Swiss-Prot for EIF4H Gene

Cytoplasm, perinuclear region.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for EIF4H Gene COMPARTMENTS Subcellular localization image for EIF4H gene
Compartment Confidence
cytosol 4
nucleus 4

Gene Ontology (GO) - Cellular Components for EIF4H Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with EIF4H: view

Pathways & Interactions for EIF4H Gene

genes like me logo Genes that share pathways with EIF4H: view

Pathways by source for EIF4H Gene

Gene Ontology (GO) - Biological Process for EIF4H Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001731 formation of translation preinitiation complex IBA --
GO:0006413 translational initiation TAS --
GO:0006446 regulation of translational initiation TAS 9516461
GO:0010467 gene expression TAS --
GO:0097010 eukaryotic translation initiation factor 4F complex assembly IBA --
genes like me logo Genes that share ontologies with EIF4H: view

No data available for SIGNOR curated interactions for EIF4H Gene

Drugs & Compounds for EIF4H Gene

(1) Drugs for EIF4H Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with EIF4H: view

Transcripts for EIF4H Gene

Unigene Clusters for EIF4H Gene

Eukaryotic translation initiation factor 4H:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EIF4H Gene

No ASD Table

Relevant External Links for EIF4H Gene

GeneLoc Exon Structure for
EIF4H
ECgene alternative splicing isoforms for
EIF4H

Expression for EIF4H Gene

mRNA expression in normal human tissues for EIF4H Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for EIF4H Gene

This gene is overexpressed in Peripheral blood mononuclear cells (8.6) and Brain (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for EIF4H Gene



SOURCE GeneReport for Unigene cluster for EIF4H Gene Hs.520943

mRNA Expression by UniProt/SwissProt for EIF4H Gene

Q15056-IF4H_HUMAN
Tissue specificity: The short isoform is the predominant isoform and is expressed alone in liver and skeletal muscle. Both isoforms are expressed in fibroblast, spleen, testis and bone marrow. Levels are high in lung and pancreas and low in heart, frontal cortex and kidney.
genes like me logo Genes that share expression patterns with EIF4H: view

Protein tissue co-expression partners for EIF4H Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for EIF4H Gene

Orthologs for EIF4H Gene

This gene was present in the common ancestor of animals.

Orthologs for EIF4H Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia EIF4H 35
  • 93.57 (n)
  • 99.12 (a)
WBSCR1 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia EIF4H 35
  • 94.15 (n)
  • 98.25 (a)
EIF4H 36
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Eif4h 35
  • 91.26 (n)
  • 98.79 (a)
Eif4h 16
Eif4h 36
  • 99 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia EIF4H 35
  • 99.73 (n)
  • 100 (a)
EIF4H 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Eif4h 35
  • 90.73 (n)
  • 97.98 (a)
oppossum
(Monodelphis domestica)
Mammalia EIF4H 36
  • 57 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-590 36
  • 86 (a)
OneToOne
chicken
(Gallus gallus)
Aves LOC100859865 35
  • 82.51 (n)
  • 90.57 (a)
EIF4H 36
  • 87 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia EIF4H 36
  • 86 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia eif4h 35
  • 74.45 (n)
  • 79.92 (a)
Str.6613 35
African clawed frog
(Xenopus laevis)
Amphibia MGC68480 35
zebrafish
(Danio rerio)
Actinopterygii Dr.7659 35
eif4h 35
  • 71.13 (n)
  • 80.75 (a)
eif4h 36
  • 71 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.4178 35
fruit fly
(Drosophila melanogaster)
Insecta CG1340 36
  • 18 (a)
OneToMany
Rbp2 36
  • 27 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8871 36
  • 18 (a)
OneToOne
Species with no ortholog for EIF4H:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for EIF4H Gene

ENSEMBL:
Gene Tree for EIF4H (if available)
TreeFam:
Gene Tree for EIF4H (if available)

Paralogs for EIF4H Gene

Paralogs for EIF4H Gene

(2) SIMAP similar genes for EIF4H Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for EIF4H Gene

genes like me logo Genes that share paralogs with EIF4H: view

Variants for EIF4H Gene

Sequence variations from dbSNP and Humsavar for EIF4H Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs17501 -- 74,197,394(+) ATGTG(G/T)CTTCT downstream-variant-500B
rs149249 -- 74,173,331(-) atgcc(A/G)tcctg upstream-variant-2KB
rs150873 -- 74,191,860(-) AGAGC(C/T)TGCAG intron-variant
rs150875 -- 74,185,587(-) TTCTT(C/T)GATGG intron-variant
rs150876 -- 74,181,926(-) caacc(C/T)ggcca intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for EIF4H Gene

Variant ID Type Subtype PubMed ID
nsv464563 CNV Gain 19166990
nsv831030 CNV Gain 17160897

Variation tolerance for EIF4H Gene

Residual Variation Intolerance Score: 38.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.38; 8.28% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for EIF4H Gene

HapMap Linkage Disequilibrium report
EIF4H

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EIF4H Gene

Disorders for EIF4H Gene

MalaCards: The human disease database

(1) MalaCards diseases for EIF4H Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
williams-beuren syndrome
  • fanconi schlesinger syndrome
- elite association - COSMIC cancer census association via MalaCards
Search EIF4H in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

IF4H_HUMAN
  • Note=EIF4H is located in the Williams-Beuren syndrome (WBS) critical region. WBS results from a hemizygous deletion of several genes on chromosome 7q11.23, thought to arise as a consequence of unequal crossing over between highly homologous low-copy repeat sequences flanking the deleted region. Haploinsufficiency of EIF4H may be the cause of certain cardiovascular and musculo-skeletal abnormalities observed in the disease. {ECO:0000269 PubMed:8812460}.

Relevant External Links for EIF4H

Genetic Association Database (GAD)
EIF4H
Human Genome Epidemiology (HuGE) Navigator
EIF4H
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EIF4H
genes like me logo Genes that share disorders with EIF4H: view

No data available for Genatlas for EIF4H Gene

Publications for EIF4H Gene

  1. Purification and characterization of a new eukaryotic protein translation factor. Eukaryotic initiation factor 4H. (PMID: 9516461) Richter-Cook N.J. … Merrick W.C. (J. Biol. Chem. 1998) 2 3 4 23 67
  2. Interactions between eIF4AI and its accessory factors eIF4B and eIF4H. (PMID: 18719248) Rozovsky N. … Moore M.J. (RNA 2008) 3 23
  3. Herpes simplex virus virion host shutoff protein is stimulated by translation initiation factors eIF4B and eIF4H. (PMID: 15078951) Doepker R.C. … Smiley J.R. (J. Virol. 2004) 2 3
  4. Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F. (PMID: 11418588) Rogers G.W. Jr. … Merrick W.C. (J. Biol. Chem. 2001) 3 23
  5. Comparative genomic sequence analysis of the Williams syndrome region (LIMK1-RFC2) of human chromosome 7q11.23. (PMID: 11003705) Martindale D.W. … Koop B.F. (Mamm. Genome 2000) 3 23

Products for EIF4H Gene

Sources for EIF4H Gene

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