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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

EIF4A2 Gene

protein-coding   GIFtS: 65
GCID: GC03P186548

eukaryotic translation initiation factor 4A2

(Previous names: eukaryotic translation initiation factor 4A, isoform 2...)
(Previous symbol: EIF4F)
 Explore 12 diseases affiliated with
EIF4A2 via our new
 Human Malady Compendium 
Biological research products
for EIF4A2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Eukaryotic Translation Initiation Factor 4A21 2     EIF4A-II1
DDX2B1 2 3     Eukaryotic Translation Initiation Factor 4A, Isoform 21
EIF4F1 2 3     Eukaryotic Initiation Factor 4A-II2
BM-0101 2     Eukaryotic Translation Initiation Factor 4A2
EIF4A1 2     EC 3.6.4.133
ATP-Dependent RNA Helicase EIF4A-22 3     EC 3.6.18
EIF-4A-II1     

External Ids:    HGNC: 32841   Entrez Gene: 19742   Ensembl: ENSG000001569767   OMIM: 6011025   UniProtKB: Q142403   

Export aliases for EIF4A2 gene to outside databases

Previous GC identifers: GC03P183276 GC03P187758 GC03P187903 GC03P187822 GC03P187984 GC03P186503 GC03P186522 GC03P186528 GC03P186533 GC03P186539


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: IF4A2_HUMAN, Q14240
Function: ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is
required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary
structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and
subsequent scanning for the initiator codon

Gene Wiki entry for EIF4A2


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NC_018914.1  NT_005612.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the EIF4A2 gene promoter:
         Elk-1   SREBP-1c   Lmo2   STAT5A   Meis-1b   SREBP-1b   Evi-1   E2F   Meis-1a   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidEIF4A2 promoter sequence
   Search SABiosciences Chromatin IP Primers for EIF4A2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat EIF4A2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q28   Ensembl cytogenetic band:  3q27.3   HGNC cytogenetic band: 3q28

EIF4A2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
EIF4A2 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P186548:  view genomic region     (about GC identifiers)

Start:
186,500,994 bp from pter      End:
186,507,689 bp from pter
Size:
6,696 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: IF4A2_HUMAN, Q14240 (See protein sequence)
Recommended Name: Eukaryotic initiation factor 4A-II  
Size: 407 amino acids; 46402 Da
Subunit: eIF4F is a multi-subunit complex, the composition of which varies with external and internal environmental
conditions. It is composed of at least EIF4A, EIF4E and EIF4G1/EIFFG3 (By similarity). Interacts with EIF4E. May
interact with NOM1. Interacts with HHV-1 Vhs
1 PDB 3D structure from and Proteopedia for EIF4A2:
3BOR (3D)    
Secondary accessions: D3DNU9 Q53XJ6 Q96B90 Q96EA8
Alternative splicing: 2 isoforms:  Q14240-1   Q14240-2   

Explore the universe of human proteins at neXtProt for EIF4A2: NX_Q14240

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q14240

  • 4/43 DME Specific Peptides for EIF4A2 (Q14240) (see all 43)
     VTEEDKR  LAPTREL  ELTLEGI  HACIGGT 

    EIF4A2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_001958.2  
    ENSEMBL proteins: 
     ENSP00000407504   ENSP00000415878   ENSP00000326381   ENSP00000392686   ENSP00000388237  
     ENSP00000413529   ENSP00000398370   ENSP00000402313   ENSP00000462571   ENSP00000348925  
    Reactome Protein details: Q14240
    Human Recombinant Protein Products: 
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    OriGene Purified Protein: EIF4A2
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    Novus Biologicals EIF4A2 Protein
    Novus Biologicals EIF4A2 Lysate
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    Browse ProSpec Recombinant Proteins
    Uscn Proteins for EIF4A2

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005829cytosol TAS--
    GO:0016281eukaryotic translation initiation factor 4F complex TAS8521730


    EIF4A2 for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for EIF4A2


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    EIF4A2 for domains           About GeneDecksing

    5 InterPro domains/families:
     IPR011545 DNA/RNA_helicase_DEAD/DEAH_N
     IPR000629 RNA-helicase_DEAD-box_CS
     IPR014014 RNA_helicase_DEAD_Q_motif
     IPR014001 Helicase_ATP-bd
     IPR001650 Helicase_C

    Graphical View of Domain Structure for InterPro Entry Q14240

    ProtoNet protein and cluster: Q14240

    1 Blocks protein family: IPB000629 ATP-dependent helicase

    UniProtKB/Swiss-Prot: IF4A2_HUMAN, Q14240
    Similarity: Belongs to the DEAD box helicase family. eIF4A subfamily
    Similarity: Contains 1 helicase ATP-binding domain
    Similarity: Contains 1 helicase C-terminal domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: IF4A2_HUMAN, Q14240
    Function: ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is
    required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary
    structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and
    subsequent scanning for the initiator codon
    Catalytic activity: ATP + H(2)O = ADP + phosphate

         Genatlas biochemistry entry for EIF4A2:
    eukaryotic,cap structure,translation initiation factor EIF4A,isoform 2,involved in the binding of mRNA to
    ribosome,ubiquitous with high expression in skeletal muscle,ovary,DEAD box protein family

    Enzyme Numbers (IUBMB): EC 3.6.12 EC 3.6.4.131

    miRNA
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    miRTarBase miRNAs that target EIF4A2:
    hsa-mir-21 (MIRT005772)

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    8/28 QIAGEN miScript miRNA Assays for microRNAs that regulate EIF4A2 (see all 28):
    hsa-miR-607 hsa-miR-181c hsa-miR-3146 hsa-miR-4263 hsa-miR-132 hsa-miR-105 hsa-miR-583 hsa-miR-641
    SwitchGear 3'UTR luciferase reporter plasmidEIF4A2 3' UTR sequence
    Inhib. RNA
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    Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003743translation initiation factor activity IEA--
    GO:0004386helicase activity TAS8521730
    GO:0005515protein binding IPI11408474
    GO:0005524ATP binding IEA--


    EIF4A2 for ontologies           About GeneDecksing


    3 GenomeRNAi human phenotypes for EIF4A2:
     Increased S DNA content  Increased gamma-H2AX phosphory  Increased number of mitotic ce 

    Animal Models:
         1 MGI phenotypic allele for Eif4a2 (no phenotypes)

    EIF4A2 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/19 super-pathways (see all 19About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Synthesis of PB1-F2
    3' -UTR-mediated translational regulation0.79
    Eukaryotic Translation Initiation0.73
    L13a-mediated translational silencing of Ceruloplasmin expression0.79
    Cap-dependent Translation Initiation0.73
    GTP hydrolysis and joining of the 60S ribosomal subunit0.78
    Translation0.57
    2Development_CNTF receptor signaling
    Translation_Insulin regulation of translation0.35
    Translation _Regulation of EIF4F activity0.32
    Translation Insulin regulation of translation0.35
    Translation Regulation activity of EIF4F0.32
    3Translation initiation complex formation
    Translation initiation complex formation1.00
    Ribosomal scanning and start codon recognition0.96
    Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S0.98
    4Translation_Translation regulation by Alpha-1 adrenergic receptors
    Translation_Translation regulation by Alpha-1 adrenergic receptors1.00
    Translation Translation regulation by Alpha-1 adrenergic receptors1.00
    5Cytokine Signaling in Immune system
    Cytokine Signaling in Immune system1.00
    Interferon Signaling0.61

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    3 EMD Millipore Pathways for EIF4A2
        Translation Translation regulation by Alpha-1 adrenergic receptors
    Translation Insulin regulation of translation
    Translation Regulation activity of EIF4F

    4 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for EIF4A2
        eIF2 Pathway
    mTOR Pathway
    Regulation of eIF4 and p70S6K
    Insulin Receptor Pathway

    1 Cell Signaling Technology (CST) Pathway for EIF4A2
        Translational Control

    3 GeneGo (Thomson Reuters) Pathways for EIF4A2
        Translation Insulin regulation of translation
    Translation Regulation of EIF4F activity
    Translation Translation regulation by Alpha-1 adrenergic receptors

    1 BioSystems Pathway for EIF4A2 
        Translation Factors

    5/21        Reactome Pathways for EIF4A2 (see all 21)
        Antiviral mechanism by IFN-stimulated genes
    Translation
    Eukaryotic Translation Initiation
    Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
    L13a-mediated translational silencing of Ceruloplasmin expression


    1         Kegg Pathway  (Kegg details for EIF4A2):
        RNA transport


    EIF4A2 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for EIF4A2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/596 Interacting proteins for EIF4A2 (Q142401, 2, 3 ENSP000003263814) via UniProtKB, MINT, STRING, and/or I2D (see all 596)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EIF4G1Q046371, 2, 3, ENSP000003168794EBI-2831835,EBI-73711 MINT-17061 I2D: score=4 STRING: ENSP00000316879
    ACTBP607092, 3, ENSP000003499604MINT-7947479 I2D: score=1 STRING: ENSP00000349960
    NEK2P519552, 3MINT-8263665 I2D: score=2 
    PFDN1O609252, 3MINT-8265794 I2D: score=2 
    TK1P041832, 3MINT-8273345 I2D: score=2 
    About this table

    Gene Ontology (GO): 5/12 biological process terms (GO ID links to tree view) (see all 12):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000288nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay TAS--
    GO:0000289nuclear-transcribed mRNA poly(A) tail shortening TAS--
    GO:0006412translation TAS--
    GO:0006413translational initiation TAS--
    GO:0006446regulation of translational initiation TAS8521730


    EIF4A2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    EIF4A2 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for EIF4A2
    1 Novoseek chemical compound relationship for EIF4A2 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    atp 42.9 18 17584618 (2), 1719376 (2), 16166382 (1), 9732867 (1) (see all 7)

    Search CenterWatch for drugs/clinical trials and news about EIF4A2 / IF4A2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for EIF4A2 gene: 
    NM_001967.3  

    Unigene Clusters for EIF4A2:

    Eukaryotic translation initiation factor 4A2
    Hs.518475  [show with all ESTs], Hs.599481  [show with all ESTs]
    Unigene Representative Sequences: BC013708, BC039344
    18/28 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 28):
    ENST00000441007 ENST00000445596 ENST00000323963(uc003fqs.3 uc003fqu.3)
    ENST00000426808(uc003fqv.3 uc003fqw.3) ENST00000465222 ENST00000491473
    ENST00000486805 ENST00000465032 ENST00000465267 ENST00000495049 ENST00000429589
    ENST00000425053 ENST00000440191 ENST00000485101(uc011bsb.2) ENST00000475653
    ENST00000443963 ENST00000498746 ENST00000467585

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    hsa-miR-607 hsa-miR-181c hsa-miR-3146 hsa-miR-4263 hsa-miR-132 hsa-miR-105 hsa-miR-583 hsa-miR-641
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    Additional cDNA sequence: BC039344.1 

    24/100 DOTS entries (see all 100):

    DT.100704120  DT.95366981  DT.95367045  DT.100861682  DT.92471170  DT.92471144  DT.92471199  DT.91813486 
    DT.120916005  DT.120915987  DT.100704110  DT.95367030  DT.214260  DT.100704107  DT.100704115  DT.85105316 
    DT.92471183  DT.120915819  DT.100059712  DT.100704083  DT.100704094  DT.100704092  DT.120915891  DT.120915972 

    16 AceView cDNA sequences:

    N79339 AI090838 BX118227 BG721373 BC039344 BG722642 AI969861 AA496083 
    BF979955 CD171717 N62248 AA406081 CD300445 BI463735 BI831749 BF979570 

    GeneLoc Exon Structure

    5/25 Alternative Splicing Database (ASD) splice patterns (SP) for EIF4A2 (see all 25)    About this scheme

    ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b · 7c · 7d · 7e ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^
    SP1:                          -     -           -           -     -           -     -                                   -     -                       -         
    SP2:                          -     -           -           -     -           -     -                                   -     -                       -         
    SP3:                          -     -           -           -     -     -     -     -                                   -     -                       -         
    SP4:                          -     -                 -     -     -     -     -     -                                   -     -                       -         
    SP5:                          -     -           -           -     -     -     -     -                                   -     -                       -         

    ExUns: 12a · 12b ^ 13 ^ 14 ^ 15a · 15b · 15c · 15d · 15e
    SP1:  -           -     -                                 
    SP2:  -           -     -                                 
    SP3:                                                      
    SP4:  -                                                   
    SP5:                                                      


    ECgene alternative splicing isoforms for EIF4A2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    EIF4A2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: ATCCGAAAAA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See EIF4A2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for EIF4A2

    SOURCE GeneReport for Unigene clusters: Hs.518475 Hs.599481
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for EIF4A2 gene from 8/33 species (see all 33)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves EIF4A21 eukaryotic translation initiation factor 4A2 88.37(n)
    97.79(a)
      395232  NM_204549.1  NP_989880.1 
    lizard
    (Anolis carolinensis)
    Reptilia EIF4A26
    --
    98(a)
    1 ↔ 1
    GL343321.1(112558-123268)
    African clawed frog
    (Xenopus laevis)
    Amphibia BC041252.12   -- 83.29(n)    BC041252.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufd50g112 Danio rerio cDNA clone MGC63783 IMAGE2643605, complete more 79.38(n)    BC055242.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta eIF-4a1 , 3 translational initiation translation
    initiation more3
    Eukaryotic initiation factor 4a1
    73(a)3
    66.92(n)1
    74.05(a)1
      338351  NM_057247.41  NP_476595.11 
    worm
    (Caenorhabditis elegans)
    Secernentea inf-11 , 3 Protein INF-11 71(a)
    (best of 2)3
    64.01(n)1
    72.24(a)1
      III(7001893-7003341)3
    1759661  NM_001027452.11  NP_001022623.11 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons EIF4A11 translational initiation factor 4A-1 67.45(n)
    72.97(a)
      820605  NM_112246.3  NP_566469.1 
    rice
    (Oryza sativa)
    Liliopsida Os06g07011001 hypothetical protein 68.15(n)
    74.28(a)
      4341966  NM_001065016.1  NP_001058481.1 


    ENSEMBL Gene Tree for EIF4A2 (if available)
    TreeFam Gene Tree for EIF4A2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for EIF4A2 gene
    EIF4A12  DDX202  EIF4A32  
    18/41 SIMAP similar genes for EIF4A2 using alignment to 8 protein entries:     IF4A2_HUMAN (see all proteins) (see all similar genes):
    EIF4A1    DKFZp566L241    EIF4A3    DKFZp547B159    DDX25    DDX6
    BAT1    DDX39B    DDX19A    DDX39A    DDX19B    DKFZp762C1313
    DDX19L    DDX20    DDX43    DKFZp686C21137    DDX59    DDX53

    EIF4A2 for paralogs           About GeneDecksing


    5/6 Pseudogenes.org Pseudogenes for EIF4A2 (see all 6)
    PGOHUM00000238838 PGOHUM00000238839 PGOHUM00000242296 PGOHUM00000242631 PGOHUM00000262941


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/215 NCBI SNPs in EIF4A2 are shown (see all 215    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1482317751,2
    --186499469(+) GCACGC/TTCTGT 1 -- us2k10--------
    rs1401846041,2
    --186499513(+) TTGATA/CTTTAA 1 -- us2k10--------
    rs1161019341,2
    --186499578(+) GTAATC/TACTGC 1 -- us2k11Minor allele frequency- T:0.01WA 118
    rs1503584701,2
    --186499649(+) GAAGTG/TTTCTT 1 -- us2k10--------
    rs1843586301,2
    --186499671(+) TACTTA/GGCACT 1 -- us2k10--------
    rs1147276141,2
    F,--186499699(+) GAGTTT/AAGCCT 1 -- us2k11Minor allele frequency- A:0.05WA 118
    rs1165972311,2
    F,--186499702(+) TTTAGC/GCTTTA 1 -- us2k11Minor allele frequency- G:0.05WA 118
    rs1881049571,2
    --186499745(+) ATCTAA/GTGTAG 1 -- us2k10--------
    rs762247891,2
    C--186499778(+) CAACGA/CTTAAG 1 -- us2k10--------
    rs786698761,2
    C--186499779(+) AACGAA/TTAAGT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for EIF4A2 (186500994 - 186507689 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 3 variations for EIF4A2
         3 CNVs: 47856 3467 32540

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    EIF4A2 for disorders           About GeneDecksing

    OMIM gene information: 601102    OMIM disorders: --

    12 diseases for EIF4A2:    About MalaCards
    diffuse large b-cell lymphoma    b-cell lymphomas    acute myeloid leukemia    herpes simplex
    myeloid leukemia    hepatitis c    cholera    leukemia
    hepatitis    pneumonia    schizophrenia    malaria


    Export disorders for EIF4A2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for EIF4A2 gene, integrated from 9 sources (see all 84):
    (articles sorted by number of sources associating them with EIF4A2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Isolation and mapping of the human EIF4A2 gene homologous to the murine protein synthesis initiation factor 4A-II gene Eif4a2. (PubMed id 8521730)1, 2, 3 Sudo K.... Nakamura Y. (1995)
    2. mRNA decay during herpes simplex virus (HSV) infections: protein- protein interactions involving the HSV virion host shutoff protein and translation factors eIF4H and eIF4A. (PubMed id 16014927)1, 2 Feng P.... Read G.S. (2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Eukaryotic initiation factors 4A (eIF4A) and 4G (eIF4G) mutually interact in a 1:1 ratio in vivo. (PubMed id 11408474)1, 2 Li W.... Proud C.G. (2001)
    5. Human eukaryotic initiation factor 4AII associates with hepatitis C virus NS5B protein in vitro. (PubMed id 11922617)1, 9 Kyono K....Taguchi I. (2002)
    6. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    7. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
    8. A cellular response linking eIF4AI activity to eIF4AII transcription. (PubMed id 22589333)1 Galicia-Vazquez G....Pelletier J. (2012)
    9. Proteome-wide identification of ubiquitylation sites b y conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (2012)
    10. In vitro studies reveal that different modes of initia tion on HIV-1 mRNA have different levels of requirement for eukaryotic initiatio n factor 4F. (PubMed id 22759308)1 de Breyne S....Ohlmann T. (2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
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      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 1974 HGNC: 3284 AceView: EIF4A2.1 Ensembl:ENSG00000156976 euGenes: HUgn1974
    ECgene: EIF4A2 Kegg: 1974 H-InvDB: EIF4A2

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for EIF4A2 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for EIF4A2 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for EIF4A2 gene:
    Search GeneIP for patents involving EIF4A2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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