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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

EIF3B Gene

protein-coding GIFtS: 59
GCID: GC07P002362

Eukaryotic Translation Initiation Factor 3, Subunit B

(Previous names: eukaryotic translation initiation factor 3, subunit 9 eta,...)
(Previous symbol: EIF3S9)

3 related diseases
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

Aliases
Eukaryotic Translation Initiation Factor 3, Subunit B¹ ²		hPrt1² ³
EIF3S9¹ ² ³ ⁵		PRT1² ⁵
Eukaryotic Translation Initiation Factor 3, Subunit 9 Eta, 116kDa¹ ²		EIF3-ETA²
Eukaryotic Translation Initiation Factor 3 Subunit 9² ³		EIF3-P110²
Prt1 Homolog² ³		EIF3-P116²
eIF-3-eta² ³		Eukaryotic Translation Initiation Factor 3 Subunit B²
EIF3 P110² ³		Eukaryotic Translation Initiation Factor 3, Subunit 9 (Eta, 116kD)²
EIF3 P116² ³		eIF3b³

External Ids:	HGNC: 3280¹	Entrez Gene: 8662²	Ensembl: ENSG00000106263⁷	OMIM: 603917⁵	UniProtKB: P55884³

Export aliases for EIF3B gene to outside databases

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for EIF3B Gene:

EIF3B (eukaryotic translation initiation factor 3, subunit B) is a protein-coding gene. Diseases associated with EIF3B include mouth disease, and tetralogy of fallot, and among its related super-pathways are Eukaryotic Translation Initiation and Formation of the ternary complex, and subsequently, the 43S complex. GO annotations related to this gene include protein complex scaffold and nucleotide binding.

UniProtKB/Swiss-Prot: EIF3B_HUMAN, P55884

Function: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several

steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the

recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The

eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3

complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently

prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation

Gene Wiki entry for EIF3B Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000007.13 NC_018918.2 NT_007819.17 NT_079592.2

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the EIF3B gene promoter:
Max1 Pax-5 NF-E2 p45 Egr-4 AREB6 Pax-4a NF-E2 ATF ATF6 c-Myc
Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 11): EIF3B promoter sequence

Search SABiosciences Chromatin IP Primers for EIF3B

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat EIF3B

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7p22.3 Ensembl cytogenetic band: 7p22.3 HGNC cytogenetic band: 7p22

EIF3B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
EIF3B gene location

GeneLoc information about chromosome 7 GeneLoc Exon Structure

GeneLoc location for GC07P002362: view genomic region (about GC identifiers)

Start:	2,393,721 bp from pter	End:	2,420,380 bp from pter
Size:	26,660 bases	Orientation:	plus strand

1 alternative location:

Chr7+,CRA_TCAG 2,442,541-2,468,274

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: EIF3B_HUMAN, P55884 (See protein sequence)

Recommended Name: Eukaryotic translation initiation factor 3 subunit B

Size: 814 amino acids; 92482 Da

Subunit: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is composed of 13 subunits:

EIF3A, EIF3B, EIF3C, EIF3D, EIF3E, EIF3F, EIF3G, EIF3H, EIF3I, EIF3J, EIF3K, EIF3L and EIF3M. The eIF-3 complex

appears to include 3 stable modules: module A is composed of EIF3A, EIF3B, EIF3G and EIF3I; module B is composed of

EIF3F, EIF3H, and EIF3M; and module C is composed of EIF3C, EIF3D, EIF3E, EIF3K and EIF3L. EIF3C of module C binds

EIF3B of module A and EIF3H of module B, thereby linking the three modules. EIF3J is a labile subunit that binds to

the eIF-3 complex via EIF3B. The eIF-3 complex interacts with RPS6KB1 under conditions of nutrient depletion.

Mitogenic stimulation leads to binding and activation of a complex composed of MTOR and RPTOR, leading to

phosphorylation and release of RPS6KB1 and binding of EIF4B to eIF-3. Also interacts with UPF2

Subcellular location: Cytoplasm (By similarity)

Mass spectrometry: Mass=93093.7; Method=Unknown; Range=1-814; Source=PubMed:17322308;

Mass spectrometry: Mass=92561; Mass_error=43.5; Method=MALDI; Range=1-814; Source=PubMed:18599441;

2 PDB 3D structures from and Proteopedia for EIF3B:

2KRB (3D)

2NLW (3D)

Secondary accessions: A4D208 Q2NL77 Q9UMF9

Alternative splicing: 2 isoforms: P55884-1 P55884-2

Explore the universe of human proteins at neXtProt for EIF3B: NX_P55884

Explore proteomics data for EIF3B at MOPED

Post-translational modifications:

UniProtKB: Phosphorylated. Phosphorylation is enhanced upon serum stimulation

View modification sites using PhosphoSitePlus

View neXtProt modification sites for NX_P55884

EIF3B Protein expression data from MOPED¹, PaxDb² and MAXQB³ : About this image

REFSEQ proteins (2 alternative transcripts):

NP_001032360.1 NP_003742.2

ENSEMBL proteins:

ENSP00000408062 ENSP00000354125 ENSP00000407785 ENSP00000380206

Reactome Protein details: P55884
Human Recombinant Protein Products for EIF3B:

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Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005829	cytosol	TAS	--
GO:0005852	eukaryotic translation initiation factor 3 complex	IDA	17322308
GO:0016282	eukaryotic 43S preinitiation complex	IEA	--
GO:0033290	eukaryotic 48S preinitiation complex	IEA	--

EIF3B for ontologies About GeneDecksing

EIF3B Antibody Products:

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

HGNC Gene Families:

RBM: RNA binding motif (RRM) containing

5 InterPro protein domains:

IPR013979 TIF_beta_prop-like

IPR000504 RRM_dom

IPR012677 Nucleotide-bd_a/b_plait

IPR015943 WD40/YVTN_repeat-like_dom

IPR011400 EIF3B

Graphical View of Domain Structure for InterPro Entry P55884

ProtoNet protein and cluster: P55884

2 Blocks protein domains:

IPB000504 RNA-binding region RNP-1 (RNA recognition motif)

IPB013979 Eukaryotic translation initiation factor 2A

UniProtKB/Swiss-Prot: EIF3B_HUMAN, P55884

Domain: The RRM domain mediates interaction with EIF3J

Similarity: Belongs to the eIF-3 subunit B family

Similarity: Contains 1 RRM (RNA recognition motif) domain

Similarity: Contains 5 WD repeats

EIF3B for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: EIF3B_HUMAN, P55884

Function: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several

steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the

recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The

eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3

complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently

prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation

Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000166	nucleotide binding	IEA	--
GO:0003676	nucleic acid binding	--	--
GO:0003723	RNA binding	--	--
GO:0003743	contributes to translation initiation factor activity	IDA	17581632
GO:0005515	protein binding	IPI	11169732

EIF3B for ontologies About GeneDecksing

Phenotypes:
5 GenomeRNAi human phenotypes for EIF3B:

Decreased G3BP1 protein expres	Decreased viability of wild-ty	Increased cell death in HCT116	Nuclear 60S biogenesis defects
Nucleolar pre-40S maturation d

Animal Models:

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inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for EIF3B

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		hsa-miR-3140-3p hsa-miR-124 hsa-miR-198 hsa-miR-525-5p hsa-miR-506 hsa-miR-520a-5p
		SwitchGear 3'UTR luciferase reporter plasmid: EIF3B 3' UTR sequence

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In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for EIF3B

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for EIF3B About (see all 6)

See pathways by source

SuperPath

Contained pathways About

Viral mRNA Translation

GTP hydrolysis and joining of the 60S ribosomal subunit	0.94	L13a-mediated translational silencing of Ceruloplasmin expression	0.93
Eukaryotic Translation Initiation	0.94	Formation of a pool of free 40S subunits	0.90
Cap-dependent Translation Initiation	0.94	Translation	0.78
3' -UTR-mediated translational regulation	0.93

Translation initiation complex formation

	Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S	0.95			Formation of the ternary complex, and subsequently, the 43S complex	0.87
	Ribosomal scanning and start codon recognition	0.95			Translation initiation complex formation	0.87

Generic Transcription Pathway

Gene Expression

0.47

Asparagine N-linked glycosylation

Metabolism of proteins

0.35

Translation Factors

Translation Factors

Pathways by source See SuperPaths
Show all pathways

1 BioSystems Pathway for EIF3B

Translation Factors

5/13 Reactome Pathways for EIF3B (see all 13)

	Formation of the ternary complex, and subsequently, the 43S complex
	Translation
	GTP hydrolysis and joining of the 60S ribosomal subunit
	Eukaryotic Translation Initiation
	Ribosomal scanning and start codon recognition

1 Kegg Pathway (Kegg details for EIF3B):

RNA transport

EIF3B for pathways About GeneDecksing

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for EIF3B

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/762 Interacting proteins for EIF3B (P55884^{1, 2, 3} ENSP00000354125⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 762)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
HIST1H4A	P62805³	I2D: score=1
HIST1H4B	P62805³	I2D: score=1
HIST1H4C	P62805³	I2D: score=1
HIST1H4D	P62805³	I2D: score=1
HIST1H4E	P62805³	I2D: score=1

About this table

Gene Ontology (GO): 5/6 biological process terms (GO ID links to tree view) (see all 6): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001731	formation of translation preinitiation complex	IEA	--
GO:0006412	translation	TAS	--
GO:0006413	translational initiation	TAS	--
GO:0006446	regulation of translational initiation	IDA	8995410
GO:0010467	gene expression	TAS	--

EIF3B for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, IUPHAR, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for EIF3B

Search CenterWatch for drugs/clinical trials and news about EIF3B

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for EIF3B gene (2 alternative transcripts):

NM_001037283.1 NM_003751.3

Unigene Cluster for EIF3B:

Eukaryotic translation initiation factor 3, subunit B

Hs.371001 [show with all ESTs]

Unigene Representative Sequence: AB209381

12 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000431643 ENST00000360876(uc003slx.3 uc003sly.3 uc003slz.1)

ENST00000413917 ENST00000397011(uc003sma.3) ENST00000463229 ENST00000463026

ENST00000468250 ENST00000466199 ENST00000475415 ENST00000468611(uc003smb.3)

ENST00000465670 ENST00000494658

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		6 QIAGEN miScript miRNA Assays for microRNAs that regulate EIF3B:
		hsa-miR-3140-3p hsa-miR-124 hsa-miR-198 hsa-miR-525-5p hsa-miR-506 hsa-miR-520a-5p
		SwitchGear 3'UTR luciferase reporter plasmid: EIF3B 3' UTR sequence

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Additional mRNA sequence:

AB209381.1 AK127885.1 AK300967.1 AK302058.1 BC001173.1 BC009986.1 BC110865.1 U62583.1

U78525.1

24/35 DOTS entries (see all 35):

DT.100834695 DT.97798019 DT.100759692 DT.95173385 DT.100834690 DT.454061 DT.100730058 DT.429116

DT.92462641 DT.97786597 DT.203336 DT.70104982 DT.102836765 DT.100039603 DT.95305235 DT.95148198

DT.97864515 DT.121124337 DT.95313948 DT.100834693 DT.121124353 DT.100033517 DT.100834684 DT.100834692

24/758 AceView cDNA sequences (see all 758):

CA313146 AI990399 BQ015102 BM790290 BQ220582 BU539252 BU860027 CF455722

BG260460 CA414423 BU184482 BU539785 BG679127 BM904776 CF131575 BQ184896

AW402799 BM455055 BM560380 AI160080 CR603885 BQ221471 BG481207 BU631424

GeneLoc Exon Structure

18 Alternative Splicing Database (ASD) splice patterns (SP) for EIF3B (see first 5) About this scheme

ExUns:	1	^	2	^	3a	·	3b	·	3c	^	4a	·	4b	^	5a	·	5b	^	6a	·	6b	^	7a	·	7b	^	8a	·	8b	^	9a	·	9b	·	9c	^	10	^	11a	·	11b	^	12a	·	12b	^	13	^	14	^	15a	·
SP1:																															-										-				-		-
SP2:																															-										-				-		-
SP3:																															-										-				-		-
SP4:																															-										-				-		-
SP5:			-		-		-		-
SP6:									-
SP7:																									-		-		-		-		-		-		-		-		-		-		-		-		-		-
SP8:
SP9:
SP10:																																									-				-		-
SP11:
SP12:
SP13:					-		-		-		-
SP14:
SP15:																																									-
SP16:
SP17:
SP18:															-		-

ExUns:	15b	·	15c	^	16	^	17a	·	17b	^	18	^	19a	·	19b	·	19c	^	20a	·	20b	^	21	^	22a	·	22b	^	23a	·	23b	^	24a	·	24b	·	24c
SP1:			-				-						-														-		-				-
SP2:			-				-						-														-
SP3:			-				-						-														-		-
SP4:			-				-						-														-		-
SP5:
SP6:
SP7:			-				-
SP8:													-														-
SP9:																											-		-
SP10:
SP11:
SP12:																											-		-		-
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:

ECgene alternative splicing isoforms for EIF3B

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

EIF3B expression in normal human tissues (normalized intensities) EIF3B embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: GAAATAAAAG

About this image

EIF3B expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database

5/1 selected tissues (see all 1) fully expand


Heart (Cardiovascular System)
Outflow Tract

See EIF3B Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for EIF3B

SOURCE GeneReport for Unigene cluster: Hs.371001

SABiosciences Custom PCR Arrays for EIF3B

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for EIF3B gene from 10/25 species (see all 25) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Eif3b^{1 , 5}	eukaryotic translation initiation factor 3, subunit more^{1, 5}	85.68(n)¹ 92.51(a)¹		5 (78.97 cM)⁵ 27979¹ NM_133916.2¹ NP_598677.1¹ 140419305⁵
chicken (Gallus gallus)	Aves	EIF3B¹	eukaryotic translation initiation factor 3, subunit more	79.62(n) 91.02(a)		769783 XM_003642142.1 XP_003642190.1
lizard (Anolis carolinensis)	Reptilia	EIF3B⁶ --	Uncharacterized protein	72(a) 56(a)	many → 1 many → 1	GL343340.1(41712-52758) GL343307.1(1301747-1303336)
African clawed frog (Xenopus laevis)	Amphibia	Xl.26073²	Xenopus laevis transcribed sequence with moderate similarity more	77.37(n)		48055327
zebrafish (Danio rerio)	Actinopterygii	wufc17c01²	wufc17c01	82.82(n)		324028 CA787533.1
fruit fly (Drosophila melanogaster)	Insecta	eIF3-S9¹	CG4878-PA	58.47(n) 53.76(a)		36981 NM_137384.3 NP_611228.1
worm (Caenorhabditis elegans)	Secernentea	eif-3.B¹	Protein EIF-3.B	46.13(n) 36.6(a)		175138 NM_001027298.3 NP_001022469.1
baker's yeast (Saccharomyces cerevisiae)	Saccharomycetes	PRT1(YOR361C)⁴ PRT1¹	eIF3b subunit of the core complex of translation initiation more⁴ Prt1p¹	47.92(n)¹ 34.28(a)¹		15(1017652-1015361)⁴ 854543^{1, 4} NP_015006.3¹ NP_015006.1⁴
thale cress (Arabidopsis thaliana)	eudicotyledons	TIF3B1¹	translation initiation factor 3 subunit B	53.14(n) 43.23(a)		832826 NM_001036877.2 NP_001031954.1
rice (Oryza sativa)	Liliopsida	Os.4899²	Oryza sativa (japonica cultivar-group) cDNA clone0 more	70.36(n)		AK110143.1

ENSEMBL Gene Tree for EIF3B (if available)
TreeFam Gene Tree for EIF3B (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for EIF3B gene

1 SIMAP similar gene for EIF3B using alignment to 7 protein entries: EIF3B_HUMAN (see all proteins):

EIF3S9

EIF3B for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Valid	Clinical significance	Chr 7 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs7795937^1,2	C	--	2392502(+)	`cttatC/Tgtaca`	2	--	us2k¹		0	--	--	--	--
rs186644527^1,2		--	2392544(+)	`ACCTGC/TCCAAA`	2	--	us2k¹		0	--	--	--	--
rs191108917^1,2	C	--	2392571(+)	`CATGAC/TGAGGA`	2	--	us2k¹		0	--	--	--	--
rs140573262^1,2		--	2392678(+)	`AGTCCC/TGGCAC`	2	--	us2k¹		0	--	--	--	--
rs74934372^1,2	F	--	2392748(+)	`ACACAG/ATGAGA`	2	--	us2k¹		1		NA	120
rs145735770^1,2		--	2392785(+)	`TGGGCA/GCGGTG`	2	--	us2k¹		0	--	--	--	--
rs62444162^1,2	C,F	--	2392860(+)	`GCATAT/CTAAAA`	2	--	us2k¹		2		NA	122
rs182566997^1,2		--	2392876(+)	`AGGCCC/GTGCGC`	2	--	us2k¹		0	--	--	--	--
rs141855682^1,2		--	2392881(+)	`CTGCGC/GGGTGG`	2	--	us2k¹		0	--	--	--	--
rs7792934^1,2	C,F	--	2393016(+)	`accctG/Atctct`	2	--	us2k¹		12		NA WA CSA EA	374

HapMap Linkage Disequilibrium report for EIF3B (2393721 - 2420380 bp)

Structural Variations
Database of Genomic Variants (DGV) 10/14 variations for EIF3B (see all 14): About this table

Variant ID	Type	Subtype	PubMed ID
esv2733848	CNV	Deletion	23290073
esv2663485	CNV	Deletion	23128226
dgv1118e201	CNV	Deletion	23290073
esv2424013	CNV	Deletion	19546169
esv2733846	CNV	Deletion	23290073
esv2733849	CNV	Deletion	23290073
esv2733845	CNV	Deletion	23290073
esv2140457	CNV	Deletion	18987734
esv1406872	CNV	Deletion	17803354
esv2733851	CNV	Deletion	23290073

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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EIF3B for disorders           About GeneDecksing

OMIM gene information: 603917    OMIM disorders: --

3 diseases for EIF3B:    About MalaCards

mouth disease tetralogy of fallot melanoma

Export disorders for EIF3B gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for EIF3B gene, integrated from 9 sources (see all 84):
(articles sorted by number of sources associating them with EIF3B)

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The human homologue of the yeast Prt1 protein is an integral part of the eukaryotic initiation factor 3 complex and interacts with p170. (PubMed id 8995410)^{1, 2, 3, 9} Methot N.... Sonenberg N. (1997)
Molecular interaction between human tumor marker protein p150, the largest subunit of eIF3, and intermediate filament protein K7. (PubMed id 11169732)^{1, 2, 9} Lin L.... Burger M.M. (2001)
Biochemical characterization of mammalian translation initiation factor 3 (eIF3). Molecular cloning reveals that p110 subunit is the mammalian homologue of Saccharomyces cerevisiae protein Prt1. (PubMed id 9388245)^{1, 2, 9} Chaudhuri J.... Maitra U. (1997)
Mass spectrometry reveals modularity and a complete subunit interaction map of the eukaryotic translation factor eIF3. (PubMed id 18599441)^{1, 2} Zhou M....Robinson C.V. (2008)
Reconstitution reveals the functional core of mammalian eIF3. (PubMed id 17581632)^{1, 2} Masutani M.... Imataka H. (2007)
Structural characterization of the human eukaryotic initiation factor 3 protein complex by mass spectrometry. (PubMed id 17322308)^{1, 2} Damoc E....Leary J.A. (2007)
Structure of eIF3b RNA recognition motif and its interaction with eIF3j: structural insights into the recruitment of eIF3b to the 40 S ribosomal subunit. (PubMed id 17190833)^{1, 2} ElAntak L.... Lukavsky P.J. (2007)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)^{1, 2} Olsen J.V....Mann M. (2006)
mTOR and S6K1 mediate assembly of the translation preinitiation complex through dynamic protein interchange and ordered phosphorylation events. (PubMed id 16286006)^{1, 2} Holz M.K.... Blenis J. (2005)
The j-subunit of human translation initiation factor eIF3 is required for the stable binding of eIF3 and its subcomplexes to 40 S ribosomal subunits in vitro. (PubMed id 14688252)^{1, 2} Fraser C.S....Hershey J.W. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 8662	HGNC: 3280	AceView: EIF3S9	Ensembl:ENSG00000106263	euGenes: HUgn8662
ECgene: EIF3B	Kegg: 8662	H-InvDB: EIF3B

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for EIF3B	Pharmacogenomics, SNPs, Pathways

Intellectual Property for EIF3B gene
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Patent Information for EIF3B gene:
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EIF3B Gene

Eukaryotic Translation Initiation Factor 3, Subunit B

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EIF3B Gene

Eukaryotic Translation Initiation Factor 3, Subunit B

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