EIF2AK2 Gene
protein-coding GIFtS : 60
GC02M037246
eukaryotic translation initiation factor 2-alpha kinase 2 (Previous names: protein kinase, interferon-inducible double stranded RNA dependent )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: PRKR )
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Aliases & Descriptions for EIF2AK2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 2.7.11.1 3 EIF2AK1 1 , 2 MGC126524 2 OTTHUMP00000126954 2 PKR 1 , 2 , 3 PRKR 2 , 3
Descriptions Interferon-inducible RNA-dependent protein kinase 3 P1/eIF-2A protein kinase 3 Protein kinase RNA-activated 3 double stranded RNA activated protein kinase 2 eIF-2A protein kinase 2 3 eukaryotic translation initiation factor 2-alpha kinase 2 2 , 3 interferon-inducible elF2alpha kinase 2 p68 kinase 3 protein kinase, interferon-inducible double stranded RNA dependent 1 , 2
Search outside databases for aliases for EIF2AK2 gene
Summaries for EIF2AK2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: E2AK2_HUMAN, P19525 Function : Following activation by double-stranded RNA in the presence of ATP, the kinase becomesautophosphorylated and can catalyze the phosphorylation of the translation initiation factorEIF2S1, which leads to an inhibition of the initiation of protein synthesis. Double-stranded RNAis generated during the course of a viral infection
Gene Wiki entry for EIF2AK2 (Protein_kinase_R)
Genomic Location for EIF2AK2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the EIF2AK2 gene Entrez Gene cytogenetic band: 2p22-p21 Ensembl cytogenetic band: 2p22.2 HGNC cytogenetic band: 2p22-p21 EIF2AK2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M037246:
(about GC identifiers )
Start:
37,179,857 bp from pter
End:
37,405,184 bp from pter
Size:
225,328 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000002.10 NT_022184.14 Proteins for EIF2AK2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: E2AK2_HUMAN, P19525 (See
protein sequence )Recommended Name: Interferon-induced, double-stranded RNA-activated protein kinase Size : 551 amino acids; 62094 Da
Subunit : Homodimer. Interacts with STRBP (By similarity). Interacts with DNAJC3. Inhibited bydirect interaction with viral proteins such as HCV E2, HCV NS5A and influenza A NS1. Activated bythe interaction with HIV-1 Tat
PDB structures from and Proteopedia : 1QU6 (3D)
 2A19 (3D)
 2A1A (3D)
 
Secondary accessions : Q52M43 Q9UIR4
Post-translational modifications:
Autophosphorylated on several Ser and Thr residues. Autophosphorylation of Thr-451 is dependent onThr-446 and is stimulated by dsRNA binding and dimerization. Autophosphorylation apparently leadsto the activation of the kinase1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001129123.1 NP_001129124.1 NP_002750.1 ENSEMBL proteins: ENSP00000368453 ENSP00000378559 ENSP00000374663 ENSP00000385014 ENSP00000341954 ENSP00000233057 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005622 intracellular
IEA --
About this table Antibodies for EIF2AK2: Assays for EIF2AK2:
Protein
Domains/ Families for EIF2AK2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P19525 ProtoNet protein and cluster: P19525
1 Blocks protein family : IPB001159 Double-stranded RNA binding (DsRBD) domain UniProtKB/Swiss-Prot: E2AK2_HUMAN, P19525 Similarity : Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. GCN2subfamily Similarity : Contains 2 DRBM (double-stranded RNA-binding) domainsSimilarity : Contains 1 protein kinase domain
Gene Function for EIF2AK2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (EIF2AK2 ) Millipore RNAi Products for the Analysis of EIF2AK2 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (EIF2AK2 )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_002759 Applied Biosystems Silencer ® siRNAs for EIF2AK2 Sigma-Aldrich siRNA and siRNA Panels for EIF2AK2 Sigma-Aldrich shRNA Panels and shRNA for EIF2AK2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135651                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135651                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_001135651  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001135651 UniProtKB/Swiss-Prot: E2AK2_HUMAN, P19525 Function : Following activation by double-stranded RNA in the presence of ATP, the kinase becomesautophosphorylated and can catalyze the phosphorylation of the translation initiation factorEIF2S1, which leads to an inhibition of the initiation of protein synthesis. Double-stranded RNAis generated during the course of a viral infection Catalytic activity : ATP + a protein = ADP + a phosphoproteinEnzyme regulation : Activity is markedly stimulated by manganese ions. Besides dsRNA, heparin is apotent activator of the kinase. Binding to dsRNA is required for dimerization leading toautophosphorylation in the activation loop and stimulation of function. Inhibited by vacciniavirus protein E3, probably via dsRNA sequestering Induction : By interferonEnzyme Number (IUBMB): EC 2.7.11.1
2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Eif2ak2) :5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
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Pathways & Interactions for EIF2AK2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/8 Sigma-Aldrich "Your Favorite Gene" Pathways for EIF2AK2 (Your Favorite Gene powered by Ingenuity) (see all 8
) Gene Network CentralTM Interacting Genes and Proteins Network for EIF2AK2 5/10 Interacting proteins for EIF2AK2 (P19525 1 , 2 ENSP00000374663 3 ) via UniProtKB, MINT, and/or STRING (see all 10
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
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Drugs & Compounds for EIF2AK2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for EIF2AK2 10/17 Novoseek chemical compound relationships for EIF2AK2 gene (see all 17
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
nf 45
62.28
3
11438540 (2)
threonine
60.87
38
15737233 (2), 16613840 (2), 7686884 (1), 9034343 (1) (see all 33 )
poly(i-c)
51.68
9
9765401 (2), 7901291 (1), 15607693 (1), 17341633 (1)
ifn-alpha
47.90
8
8929499 (2), 18535617 (2), 15290347 (1), 17764414 (1)
poly c
31.70
2
2219731 (1), 10648614 (1)
inosine monophosphate
29.61
2
15229216 (1), 10648614 (1)
iptg
23.41
1
1718419 (1)
rantes
16.93
3
17600282 (2), 16699048 (1)
nucleoside
7.87
2
18426922 (2)
nitric oxide
3.64
8
18559534 (2), 11272138 (2)
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Transcripts for EIF2AK2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (EIF2AK2 ) Millipore RNAi Products for the Analysis of EIF2AK2 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (EIF2AK2 )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_002759 Sigma-Aldrich siRNA and siRNA Panels for EIF2AK2 Sigma-Aldrich shRNA Panels and shRNA for EIF2AK2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001135651 NM_001135652 NM_002759
REFSEQ mRNAs for EIF2AK2 gene (3 alternative transcripts): NM_001135651.1 NM_001135652.1 NM_002759.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001135651 NM_001135652 NM_002759
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135651                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135651                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_001135651  
Additional cDNA sequence: AF086566.1 AK290655.1 AK313818.1 AY302136.1 BC007769.2 BC022314.1 BC040851.1 BC057805.1 BC093676.1 BC101475.1 BC143228.1 BC143230.1 CR600308.1 M35663.1 M85294.1
12 DOTS entries : DT.412798 DT.100790892 DT.92054033 DT.95298593 DT.40202404 DT.97835949 DT.92458447 DT.92458452 DT.95277628 DT.121014262 DT.100790891 DT.95277625
24/265 AceView cDNA sequences (see all 265
):BU615395 AA295844 AI472475 AA393792 CA448019 CA448115 AU119328 AW167249 N62286 BC022314 BQ428392 AA477717 BU618209 AW615284 CA445747 AI360504 AA700984 AI873824 CR600308 AL600941 BQ002126 AI369437 AI348332 BX362627
highest scoring ESTs for EIF2AK2 :BC040851 BC057805 AA010079 AA488335 AA730488 AF086566 AI074902 AI360504 AI687893 AI816883
Unigene Cluster for EIF2AK2: Eukaryotic translation initiation factor 2-alpha kinase 2 Hs.131431 [show with all ESTs ] Unigene Representative Sequence: NM_002759 GeneLoc Exon Structure 6 Ensembl transcripts including schematic representations : ENST00000379156
ENST00000395127
ENST00000390013
ENST00000405334
ENST00000343510
ENST00000233057
Expression for EIF2AK2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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EIF2AK2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for EIF2AK2 1 / 2 / 3
12 probe-sets matching EIF2AK2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.131431 Expression variation in blood from EXPOLDB for EIF2AK2
Orthologs for EIF2AK2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for EIF2AK2 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for EIF2AK2 ENSEMBL Gene Tree for EIF2AK2 Paralogs for EIF2AK2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for EIF2AK2 gene EIF2AK1 2 EIF2AK4 2 EIF2AK3 2
SNPs/Variants for EIF2AK2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for EIF2AK2 (up to first 250kb)
Disorders & Mutations for EIF2AK2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 176871 10/52 Novoseek disease relationships for EIF2AK2 gene (see all 52
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
virus infection
68.04
77
11232238 (2), 10878375 (2), 11752660 (2), 10712589 (2) (see all 53 )
vesicular stomatitis
56.61
8
8974011 (2), 15070037 (2), 15174900 (1), 11838900 (1)
hepatitis c
56.03
27
14638359 (1), 15850464 (1), 10745229 (1), 10827164 (1) (see all 24 )
influenza
46.18
29
17320139 (4), 8990167 (2), 8892939 (2), 10954584 (2) (see all 14 )
herpes simplex
41.25
13
16414988 (2), 9765401 (2), 9223497 (2), 9023344 (1) (see all 10 )
hepatitis c chronic
35.89
6
15535414 (2), 12210408 (1), 17501760 (1), 15684819 (1)
immunodeficiency
33.37
12
9079663 (2), 2180064 (1), 10400814 (1), 15737233 (1) (see all 10 )
fanconis anemia
29.50
4
12882984 (2), 11238103 (1), 15299030 (1)
mumps
26.57
4
18567898 (3), 9856085 (1)
chronic fatigue syndrome
23.30
2
11698994 (1), 9243369 (1)
About this table Genetic Association Database: EIF2AK2 Human Genome Epidemiology Navigator: EIF2AK2 (5 documents)
Medical News for EIF2AK2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for EIF2AK2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/535 PubMed articles for EIF2AK2 gene (see all 535
): The Tat protein of human immunodeficiency virus type 1 is a substrate and inhibitor of the interferon-induced, virally activated protein kinase, PKR. (PubMed id 9079663) 1, 3, 4 Brand S.R.... Mathews M.B. (1997) The P58 cellular inhibitor complexes with the interferon-induced, double-stranded RNA-dependent protein kinase, PKR, to regulate its autophosphorylation and activity. (PubMed id 8576172) 1, 3, 4 Polyak S.J.... Katze M.G. (1996) Genomic features of human PKR: alternative splicing and a polymorphic CGG repeat in the 5'-untranslated region. (PubMed id 9726442) 1, 3, 4 Xu Z. and Williams B.R. (1998) Structural organization of the human gene (PKR) encoding an interferon-inducible RNA-dependent protein kinase (PKR) and differences from its mouse homolog. (PubMed id 8812437) 1, 3, 4 Kuhen K.L.... Samuel C.E. (1996) Polymorphisms in interferon-induced genes and the outcome of hepatitis C virus infection: roles of MxA, OAS-1 and PKR. (PubMed id 12944978) 1, 3, 6 Knapp S....Thursz M.R. (2003) Molecular cloning and characterization of the human double-stranded RNA-activated protein kinase induced by interferon. (PubMed id 1695551) 1, 3, 4 Meurs E.... Hovanessian A.G. (1990) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 3, 4 Hillier L.W....Wilson R.K. (2005) Inhibition of PKR by vaccinia virus: role of the N- and C-terminal domains of E3L. (PubMed id 15207627) 3, 4 Langland J.O. and Jacobs B.L. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Genetic polymorphisms in interferon pathway and response to interferon treatment in hepatitis B patients: A pilot study. (PubMed id 12447867) 3, 6 King J.K....Chen P.J. (2002)
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Genome Databases showing EIF2AK2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing EIF2AK2
(According to HUGE )
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Specialized Databases showing EIF2AK2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for EIF2AK2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for EIF2AK2:
Antibodies & Assays for EIF2AK2   (PKR)
Recombinant Proteins (PKR ) Antibodies (PKR )
Search Tocris compounds for EIF2AK2
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009