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Aliases & Descriptions for EGR1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| AT225 1, 2, 3 | | EGR-1 3 | | G0S30 1, 2 | | KROX-24 1, 2 | | NGFI-A 1, 2, 3 | | TIS8 1, 2 | | ZIF-268 1, 2 | | ZNF225 1, 2, 3 |
| | | Descriptions |
|---|
| Nerve growth factor-induced protein A 2, 3 | | Protein Krox-24 3 | | Transcription factor ETR103 2, 3 | | Transcription factor Zif268 3 | | Zinc finger protein 225 2, 3 | | early growth response 1 2 | | early growth response protein 1 2 |
|
| | Search outside databases for aliases for EGR1 genePrevious GC identifers: GC05P137675 GC05P138476 GC05P137832 GC05P137877 |
Summaries for EGR1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for EGR1: The protein encoded by this gene belongs to the EGR family of C2H2-type zinc-finger proteins. It is a nuclear protein and functions as a transcriptional regulator. The products of target genes it activates are required for differentitation and mitogenesis. Studies suggest this is a cancer suppresor gene. [provided by RefSeq] UniProtKB/Swiss-Prot: EGR1_HUMAN, P18146Function: Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-CGCCCCCGC-3'(EGR-site). Activates the transcription of target genes whose products are required for mitogenesis and differentiationGene Wiki entry for EGR1 (Zif268) |
Genomic Location for EGR1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the EGR1 gene 
Entrez Gene cytogenetic band: 5q31.1 Ensembl cytogenetic band: 5q31.2 HGNC cytogenetic band: 5q23-q31EGR1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05P137829:
(about GC identifiers)
Start:
|
137,829,080 bp from pter |
End:
|
137,832,903 bp from pter |
Size:
|
3,824 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000005.8 NT_034772.5
| Proteins for EGR1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: EGR1_HUMAN, P18146 (See
protein sequence)Recommended Name: Early growth response protein 1 Size: 543 amino acids; 57507 Da
Subcellular location: NucleusPost-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001955.1
ENSEMBL proteins: ENSP00000239938
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for EGR1: Assays for EGR1: | Protein
Domains/ Families for EGR1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P18146
ProtoNet protein and cluster: P18146 1 Blocks protein family: IPB007086 C2H2-type zinc finger signature
UniProtKB/Swiss-Prot: EGR1_HUMAN, P18146Similarity: Belongs to the EGR C2H2-type zinc-finger protein familySimilarity: Contains 3 C2H2-type zinc fingers | Gene Function for EGR1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001964
Applied Biosystems Silencer® siRNAs for EGR1
Sigma-Aldrich siRNA for EGR1  Sigma-Aldrich shRNA Panels and shRNA for EGR1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001964                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001964                                  untagged cDNA clone in CMV expression vector: NM_001964 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001964
UniProtKB/Swiss-Prot: EGR1_HUMAN, P18146Function: Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-CGCCCCCGC-3'(EGR-site). Activates the transcription of target genes whose products are required for mitogenesis and differentiationInduction: By growth factorsGenatlas biochemistry entry for EGR1:immediate early growth response,gene 1 (pAT225),nerve growth factor induced clone A,specifically expressed in Schwann cells,induced by a wide variety of extracellular stimuli,involved in cell proliferation,macrophage differentiation,synaptic activation and long term potentiation,coactivated by CREBBP6 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Egr1):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for EGR1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
4 Sigma-Aldrich "Your Favorite Gene" Pathways for EGR1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for EGR1 
5/171 Interacting proteins for EGR1 (ENSP000002399383 P181462) via UniProtKB, MINT, and/or STRING (see all 171
)About this table
5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- | | GO:0007611 | learning or memory |
IEA | -- | | GO:0030217 | T cell differentiation |
IEA | -- | | GO:0045941 | positive regulation of transcription |
IDA | 12560508 | About this table
|
Drugs & Compounds for EGR1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for EGR1 10/47 Novoseek chemical compound relationships for EGR1 gene (see all 47
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| zinc |
67.15 |
117 |
8132543 (4), 9485332 (3), 8336701 (2), 10671503 (2) (see all 69) |
| pd 98,059 |
63.57 |
21 |
17230532 (2), 11121417 (2), 12483323 (1), 12457461 (1) (see all 19) |
| ptx1 |
57.36 |
4 |
10859489 (2), 10082522 (1), 15469090 (1) |
| 12-o-tetradecanoylphorbol 13-acetate |
54.98 |
37 |
15910736 (4), 8018558 (2), 1417981 (2), 11751871 (1) (see all 16) |
| phorbol-12-myristate |
49.35 |
4 |
7519845 (1), 11007455 (1), 15231681 (1), 10674404 (1) |
| phosphatidylinositol |
42.39 |
27 |
10050043 (4), 8302296 (2), 16424010 (2), 11403719 (2) (see all 17) |
| okadaic acid |
40.64 |
34 |
8174132 (9), 12570057 (6), 8381016 (6), 1320009 (3) (see all 8) |
| thymidine |
37.56 |
12 |
19062733 (1), 16806337 (1), 8366092 (1), 8664375 (1) (see all 8) |
| oligonucleotide |
36.75 |
19 |
11830539 (2), 12570057 (1), 16995904 (1), 7673192 (1) (see all 9) |
| tyrosine |
34.84 |
38 |
16515541 (3), 11053775 (3), 8398902 (2), 9012782 (2) (see all 21) |
About this table
|
Transcripts for EGR1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001964
Sigma-Aldrich siRNA for EGR1  Sigma-Aldrich shRNA Panels and shRNA for EGR1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001964 REFSEQ mRNAs for EGR1 gene: NM_001964.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001964               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001964                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001964                                  untagged cDNA clone in CMV expression vector: NM_001964  Additional cDNA sequence: M24019.1 16 DOTS entries: DT.451515 DT.92410441 DT.92444091 DT.100815176 DT.92444078 DT.100652567 DT.100815174 DT.100838251 DT.100815170 DT.120828084 DT.75188226 DT.92444088 DT.95168866 DT.95288077 DT.91927235 DT.95243780 24/292 AceView cDNA sequences (see all 292
):AI937024 AL602754 BQ447364 AI480152 BM310258 AI479169 NM_001964 BU952514 AA327331 BG059835 AI625815 D57841 AA679209 AI582664 M80583 AI701078 BX425480 AA366121 CK905254 AA300268 BQ723542 CA435715 CD238597 BX645009
highest scoring ESTs for EGR1:X52541 AA158960 AA158961 AA298861 AA300267 AA318923 AA327331 AA327475 AA356929 AA366121 Unigene Clusters for EGR1: Early growth response 1 Hs.326035 [show with all ESTs], Hs.708393 [show with all ESTs]Unigene Representative Sequences: NM_001964, CD522629
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000239938
|
Expression for EGR1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| EGR1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for EGR1
1 / 2 / 3 5 probe-sets matching EGR1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGATATGTGG
SOURCE GeneReport for Unigene clusters: Hs.326035 Hs.708393
Expression variation in blood from EXPOLDB for EGR1 |
Orthologs for EGR1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for EGR1 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for EGR1
ENSEMBL Gene Tree for EGR1 | Paralogs for EGR1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for EGR1 gene
- EGR32 EGR22
|
SNPs/Variants for EGR1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for EGR1 (up to first 250kb)
|
Disorders & Mutations for EGR1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 128990
10/77 Novoseek disease relationships for EGR1 gene (see all 77
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| wilms tumor |
51.60 |
17 |
11106242 (5), 7823937 (1), 11734301 (1), 1367123 (1) (see all 11) |
| tumors |
45.06 |
164 |
9212230 (6), 15774784 (6), 16093249 (5), 11135623 (4) (see all 89) |
| myeloid leukemia |
39.02 |
5 |
1864967 (1), 8381016 (1), 7690249 (1), 7706752 (1) (see all 5) |
| necrosis |
36.73 |
29 |
11586099 (1), 14726502 (1), 18814180 (1), 1730654 (1) (see all 26) |
| monocytic leukemia |
34.89 |
3 |
11734301 (2), 2064996 (1) |
| leukemia t-cell |
32.93 |
1 |
1359492 (1) |
| fibrosarcoma |
32.89 |
15 |
8876223 (2), 9714058 (2), 11121417 (2), 7585551 (1) (see all 9) |
| carcinoma embryonal |
31.12 |
6 |
1909429 (1), 8180132 (1), 8176254 (1), 9824160 (1) (see all 5) |
| pheochromocytoma |
29.26 |
2 |
10604389 (1), 17102092 (1) |
| glioblastoma |
28.42 |
10 |
10783396 (4), 11555594 (1), 18316600 (1), 12890669 (1) (see all 6) |
About this table
1 PharmGKB disease relationship for EGR1 gene
| Disease |
PharmGKB Relations |
PubMed IDs for articles supporting these relationships |
| Asthma | FA   | 15003938 | About this table
Genetic Association Database: EGR1 Human Genome Epidemiology Navigator: EGR1 (4 documents) Tumor Gene Database: EGR1
|
Medical News for EGR1(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for EGR1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/811 PubMed articles for EGR1 gene (see all 811
):- Induction of early growth-response factor 1 by platelet-derived growth factor in human airway smooth muscle. (PubMed id 15003938)1, 3, 7 Hjoberg J....Silverman E.S. (2004)
- A gene coding for a zinc finger protein is induced during 12-O- tetradecanoylphorbol-13-acetate-stimulated HL-60 cell differentiation. (PubMed id 1569051)1, 3, 4 Shimizu N....Utiyama H. (1992)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Expression of a zinc finger gene in HTLV-I- and HTLV-II-transformed cells. (PubMed id 2110381)3, 4 Wright J.J....Siebenlist U. (1990)
- cDNA sequence of the human cellular early growth response gene Egr- 1. (PubMed id 2377485)3, 4 Suggs S.V.... Sukhatme V.P. (1990)
- A zinc finger-encoding gene coregulated with c-fos during growth and differentiation, and after cellular depolarization. (PubMed id 3127059)2, 3 Sukhatme V.P....Curran T. (1988)
- Basal EGR-1 (zif268, NGFI-A, Krox-24) expression in developing striatal patches: role of dopamine and glutamate. (PubMed id 12470865)1, 3 Snyder-Keller A....Mitchell E.S. (2002)
- Concurrent down-regulation of Egr-1 and gelsolin in the majority of human breast cancer cells. (PubMed id 18204200)1, 3 Liu J....Huang R.P. (2007)
- Regulation of expression of the early growth response gene-1 (EGR-1) in malignant and benign cells of the prostate. (PubMed id 15486985)1, 3 Mora G.R....Tindall D.J. (2005)
- The egr-1 gene is induced by DNA-damaging agents and non-genotoxic drugs in both normal and neoplastic human cells. (PubMed id 12706485)1, 3 Quinones A....Rainov N.G. (2003)
|
Search for EGR1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing EGR1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing EGR1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing EGR1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for EGR1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for EGR1:

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Incremental update: 13 Oct 2009
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