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Aliases for EGID-105371807 Gene

Subcategory (RNA class) for EGID-105371807 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for EGID-105371807 Gene

  • Uncharacterized LOC105371807 3 5
  • THRA1/BTR 3 5
  • Thyroid Hormone Receptor Alpha 3

External Ids for EGID-105371807 Gene

Previous GeneCards Identifiers for EGID-105371807 Gene

  • GC17U902140

Summaries for EGID-105371807 Gene

GeneCards Summary for EGID-105371807 Gene

EGID-105371807 (Uncharacterized LOC105371807) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EGID-105371807 Gene

Genomics for EGID-105371807 Gene

Regulatory Elements for EGID-105371807 Gene

Enhancers for EGID-105371807 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G048538 2.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 9.9 +278.8 278831 68.8 CREB3L1 AGO1 FEZF1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D ZNF610 HOXB2 SKAP1 HOXB9 HOXB3 ENSG00000264701 HOXB-AS1 HOXB-AS3 SUMO2P17 HOXB-AS4 HOXB1
GH17G048238 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -52.2 -52173 7.2 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF766 FOS JUNB TBX21 ZNF592 SNX11 COPZ2 CDK5RAP3 ITGB3 RNU6-1152P SKAP1 MIR1203 EGID-105371807 ENSG00000266601 CBX1
GH17G048264 1.1 Ensembl ENCODE 11.4 -28.6 -28595 2.7 ATF1 ZSCAN4 INSM2 KLF17 SIN3A ZBTB40 EGR1 ZNF366 SCRT2 FOS SKAP1 COPZ2 CDK5RAP3 EGID-105371807 MIR1203 MIR196A1 RNU6-1152P CBX1 SNX11 HOXB2
GH17G048261 0.8 ENCODE 11.4 -32.9 -32852 0.2 CTCF PKNOX1 ESRRA ETV1 ZNF2 RAD21 BCL11B FOXM1 ZSCAN5C NR2F6 EGID-105371807 MIR1203 RNU6-1152P MIR196A1 SNX11 CBX1 LSM3P1
GH17G048246 0.7 ENCODE dbSUPER 10.6 -48.3 -48264 0.1 PKNOX1 CBX1 ADNP RNU6-1152P EGID-105371807 SKAP1 HOXB-AS4 HOXB9 LSM3P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EGID-105371807 on UCSC Golden Path with GeneCards custom track

Genomic Location for EGID-105371807 Gene

Chromosome:
17
Start:
48,294,335 bp from pter
End:
48,309,040 bp from pter
Size:
14,706 bases
Orientation:
Plus strand

Genomic View for EGID-105371807 Gene

Genes around EGID-105371807 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EGID-105371807 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EGID-105371807 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EGID-105371807 Gene

Proteins for EGID-105371807 Gene

Post-translational modifications for EGID-105371807 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EGID-105371807 Gene

Domains & Families for EGID-105371807 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EGID-105371807 Gene

Function for EGID-105371807 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EGID-105371807 Gene

Localization for EGID-105371807 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EGID-105371807 Gene

Pathways & Interactions for EGID-105371807 Gene

SuperPathways for EGID-105371807 Gene

No Data Available

Interacting Proteins for EGID-105371807 Gene

Gene Ontology (GO) - Biological Process for EGID-105371807 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EGID-105371807 Gene

Drugs & Compounds for EGID-105371807 Gene

No Compound Related Data Available

Transcripts for EGID-105371807 Gene

mRNA/cDNA for EGID-105371807 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EGID-105371807 Gene

No ASD Table

Relevant External Links for EGID-105371807 Gene

GeneLoc Exon Structure for
EGID-105371807

Expression for EGID-105371807 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EGID-105371807 Gene

Orthologs for EGID-105371807 Gene

Evolution for EGID-105371807 Gene

ENSEMBL:
Gene Tree for EGID-105371807 (if available)
TreeFam:
Gene Tree for EGID-105371807 (if available)

No data available for Orthologs for EGID-105371807 Gene

Paralogs for EGID-105371807 Gene

No data available for Paralogs for EGID-105371807 Gene

Variants for EGID-105371807 Gene

Sequence variations from dbSNP and Humsavar for EGID-105371807 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000223686 -- 48,304,335(+) GTAGA(A/T)TCCTT intron-variant
rs1000538302 -- 48,300,218(+) AGAAT(A/G)TGGAG intron-variant
rs1000648235 -- 48,307,917(+) TGATT(C/T)ATCTC intron-variant
rs1001182438 -- 48,294,792(+) TTGAC(C/T)CACAA intron-variant
rs1001213779 -- 48,295,175(+) CAACT(A/G)GGCAA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for EGID-105371807 Gene

Disorders for EGID-105371807 Gene

No disorders were found for EGID-105371807 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for EGID-105371807 Gene

Publications for EGID-105371807 Gene

  1. Mutation analysis of the THRA1 gene in breast cancer: deletion/fusion of the gene to a novel sequence on 17q in the BT474 cell line. (PMID: 7511052) Futreal P.A. … Wiseman R.W. (Cancer Res. 1994) 3 64

Products for EGID-105371807 Gene

Sources for EGID-105371807 Gene

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