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Aliases for EGFLAM-AS2 Gene

Subcategory (RNA class) for EGFLAM-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EGFLAM-AS2 Gene

  • EGFLAM Antisense RNA 2 2 3 5
  • EGFLAM Antisense RNA 2 (Non-Protein Coding) 2 3
  • CTD-2108O9.2 3

External Ids for EGFLAM-AS2 Gene

Summaries for EGFLAM-AS2 Gene

GeneCards Summary for EGFLAM-AS2 Gene

EGFLAM-AS2 (EGFLAM Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EGFLAM-AS2 Gene

Genomics for EGFLAM-AS2 Gene

Regulatory Elements for EGFLAM-AS2 Gene

Enhancers for EGFLAM-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G038462 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -63.2 -63211 8.3 ATF1 FOXA2 MLX SIN3A FEZF1 BRCA1 GATA2 FOS DEK TSHZ1 EGFLAM EGFLAM-AS1 ENSG00000248234 EGFLAM-AS2 LOC105374732
GH05G038806 1.6 Ensembl ENCODE dbSUPER 10.1 -405.2 -405191 4.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF766 ZNF302 CBX5 ZNF143 ZNF548 FOS RICTOR ENSG00000248234 EGFLAM-AS1 EGFLAM-AS2 EGFLAM LINC02110 LOC105374733 ENSG00000250629
GH05G038555 1.1 ENCODE 10.2 -153.4 -153364 2.4 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF263 SP3 REST SMARCB1 LIFR LOC105374732 EGFLAM-AS1 ENSG00000248234 EGFLAM-AS2 EGFLAM LIFR-AS1 MIR3650
GH05G038432 1 Ensembl ENCODE dbSUPER 11.1 -30.8 -30819 3.0 CTCF JUN NR2F2 EGFLAM-AS2 EGFLAM LOC105374732 ENSG00000248234
GH05G038346 0.6 ENCODE 10.7 +56.2 56174 1.4 SCRT1 SCRT2 JUN SUPT20H ZNF623 ATF2 EGFLAM-AS2 EGFLAM EGFLAM-AS3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EGFLAM-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for EGFLAM-AS2 Gene

Chromosome:
5
Start:
38,399,814 bp from pter
End:
38,403,471 bp from pter
Size:
3,658 bases
Orientation:
Minus strand

Genomic View for EGFLAM-AS2 Gene

Genes around EGFLAM-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EGFLAM-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EGFLAM-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EGFLAM-AS2 Gene

Proteins for EGFLAM-AS2 Gene

Post-translational modifications for EGFLAM-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EGFLAM-AS2 Gene

Domains & Families for EGFLAM-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EGFLAM-AS2 Gene

Function for EGFLAM-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EGFLAM-AS2 Gene

Localization for EGFLAM-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EGFLAM-AS2 Gene

Pathways & Interactions for EGFLAM-AS2 Gene

SuperPathways for EGFLAM-AS2 Gene

No Data Available

Interacting Proteins for EGFLAM-AS2 Gene

Gene Ontology (GO) - Biological Process for EGFLAM-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EGFLAM-AS2 Gene

Drugs & Compounds for EGFLAM-AS2 Gene

No Compound Related Data Available

Transcripts for EGFLAM-AS2 Gene

mRNA/cDNA for EGFLAM-AS2 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EGFLAM-AS2 Gene

EGFLAM antisense RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EGFLAM-AS2 Gene

No ASD Table

Relevant External Links for EGFLAM-AS2 Gene

GeneLoc Exon Structure for
EGFLAM-AS2
ECgene alternative splicing isoforms for
EGFLAM-AS2

Expression for EGFLAM-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EGFLAM-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for EGFLAM-AS2 Gene

This gene is overexpressed in Testis (x52.7).

SOURCE GeneReport for Unigene cluster for EGFLAM-AS2 Gene:

Hs.662304
genes like me logo Genes that share expression patterns with EGFLAM-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EGFLAM-AS2 Gene

Orthologs for EGFLAM-AS2 Gene

Evolution for EGFLAM-AS2 Gene

ENSEMBL:
Gene Tree for EGFLAM-AS2 (if available)
TreeFam:
Gene Tree for EGFLAM-AS2 (if available)

No data available for Orthologs for EGFLAM-AS2 Gene

Paralogs for EGFLAM-AS2 Gene

No data available for Paralogs for EGFLAM-AS2 Gene

Variants for EGFLAM-AS2 Gene

Sequence variations from dbSNP and Humsavar for EGFLAM-AS2 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000137512 -- 38,399,432(+) GCCAC(C/T)ATGCC intron-variant
rs1000267842 -- 38,399,952(+) AAATT(C/T)TCCAG intron-variant, nc-transcript-variant
rs1000596415 -- 38,400,472(+) AATTA(C/T)AATAA intron-variant, nc-transcript-variant
rs1000863709 -- 38,401,384(+) TTATC(C/T)GATTC intron-variant, nc-transcript-variant
rs1001315503 -- 38,401,572(+) CGGGG(A/T)CTTTG intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for EGFLAM-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3604761 CNV gain 21293372
esv3604766 CNV gain 21293372
esv3604768 CNV gain 21293372

Relevant External Links for EGFLAM-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EGFLAM-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EGFLAM-AS2 Gene

Disorders for EGFLAM-AS2 Gene

Relevant External Links for EGFLAM-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EGFLAM-AS2

No disorders were found for EGFLAM-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EGFLAM-AS2 Gene

Publications for EGFLAM-AS2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for EGFLAM-AS2 Gene

Sources for EGFLAM-AS2 Gene

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