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Aliases for EGFEM1P Gene

Aliases for EGFEM1P Gene

  • EGF-Like And EMI Domain Containing 1, Pseudogene 2 3
  • NCRNA00259 3 4
  • C3orf50 3 4
  • Multiple EGF-Like-Domains 6 Pseudogene 3
  • Chromosome 3 Open Reading Frame 50 2
  • Non-Protein Coding RNA 259 2

External Ids for EGFEM1P Gene

Previous HGNC Symbols for EGFEM1P Gene

  • C3orf50
  • NCRNA00259

Previous GeneCards Identifiers for EGFEM1P Gene

  • GC03P165337
  • GC03P167969

Summaries for EGFEM1P Gene

GeneCards Summary for EGFEM1P Gene

EGFEM1P (EGF-Like And EMI Domain Containing 1, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EGFEM1P Gene

Genomics for EGFEM1P Gene

Genomic Location for EGFEM1P Gene

Chromosome:
3
Start:
168,249,522 bp from pter
End:
168,830,599 bp from pter
Size:
581,078 bases
Orientation:
Plus strand

Genomic View for EGFEM1P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for EGFEM1P Gene

No data available for Regulatory Elements for EGFEM1P Gene

Proteins for EGFEM1P Gene

  • Protein details for EGFEM1P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q0D2K5-EGFEM_HUMAN
    Recommended name:
    Putative EGF-like and EMI domain-containing protein 1
    Protein Accession:
    Q0D2K5

    Protein attributes for EGFEM1P Gene

    Size:
    195 amino acids
    Molecular mass:
    21632 Da
    Quaternary structure:
    No Data Available

neXtProt entry for EGFEM1P Gene

Proteomics data for EGFEM1P Gene at MOPED

Post-translational modifications for EGFEM1P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for EGFEM1P Gene

Domains & Families for EGFEM1P Gene

Protein Domains for EGFEM1P Gene

ProtoNet:

Suggested Antigen Peptide Sequences for EGFEM1P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q0D2K5

UniProtKB/Swiss-Prot:

EGFEM_HUMAN :
  • Contains 1 EGF-like domain.
Domain:
  • Contains 1 EGF-like domain.
genes like me logo Genes that share domains with EGFEM1P: view

No data available for Gene Families for EGFEM1P Gene

Function for EGFEM1P Gene

Phenotypes for EGFEM1P Gene

GenomeRNAi human phenotypes for EGFEM1P:
genes like me logo Genes that share phenotypes with EGFEM1P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EGFEM1P Gene

Localization for EGFEM1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EGFEM1P Gene

Pathways & Interactions for EGFEM1P Gene

SuperPathways for EGFEM1P Gene

No Data Available

Interacting Proteins for EGFEM1P Gene

Gene Ontology (GO) - Biological Process for EGFEM1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EGFEM1P Gene

Drugs & Compounds for EGFEM1P Gene

No Compound Related Data Available

Transcripts for EGFEM1P Gene

mRNA/cDNA for EGFEM1P Gene

Unigene Clusters for EGFEM1P Gene

EGF-like and EMI domain containing 1, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EGFEM1P Gene

No ASD Table

Relevant External Links for EGFEM1P Gene

GeneLoc Exon Structure for
EGFEM1P
ECgene alternative splicing isoforms for
EGFEM1P

Expression for EGFEM1P Gene

mRNA expression in normal human tissues for EGFEM1P Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for EGFEM1P Gene

This gene is overexpressed in Pituitary (x13.4) and Testis (x4.1).

SOURCE GeneReport for Unigene cluster for EGFEM1P Gene Hs.478158

genes like me logo Genes that share expression patterns with EGFEM1P: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for EGFEM1P Gene

Orthologs for EGFEM1P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for EGFEM1P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Egfem1 16
Species with no ortholog for EGFEM1P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for EGFEM1P Gene

ENSEMBL:
Gene Tree for EGFEM1P (if available)
TreeFam:
Gene Tree for EGFEM1P (if available)

Paralogs for EGFEM1P Gene

(1) SIMAP similar genes for EGFEM1P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with EGFEM1P: view

No data available for Paralogs for EGFEM1P Gene

Variants for EGFEM1P Gene

Sequence variations from dbSNP and Humsavar for EGFEM1P Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs97529 -- 168,466,091(+) CTCCT(C/T)CGATA intron-variant
rs182766 -- 168,522,705(-) TCCTC(C/T)CTTCT intron-variant
rs184502 -- 168,478,304(+) TAAGA(A/G)AGTGA intron-variant
rs184503 -- 168,472,107(+) cctcc(C/T)gaagt intron-variant
rs186635 -- 168,484,656(-) TTTTT(A/T)AATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EGFEM1P Gene

Variant ID Type Subtype PubMed ID
esv2656898 CNV Deletion 23128226
esv2726175 CNV Deletion 23290073
nsv829788 CNV Loss 17160897
nsv877970 CNV Loss 21882294
esv267515 CNV Insertion 20981092
nsv877971 CNV Gain 21882294
nsv829789 CNV Gain 17160897
esv2661432 CNV Deletion 23128226
dgv1536e1 CNV Complex 17122850
esv2663400 CNV Deletion 23128226
esv2668011 CNV Deletion 23128226
nsv520411 CNV Loss 19592680
nsv4106 CNV Insertion 18451855
nsv4107 CNV Loss 18451855
esv26580 CNV Loss 19812545
esv2726176 CNV Deletion 23290073
esv2726177 CNV Deletion 23290073

Relevant External Links for EGFEM1P Gene

HapMap Linkage Disequilibrium report
EGFEM1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EGFEM1P Gene

Disorders for EGFEM1P Gene

Relevant External Links for EGFEM1P

Genetic Association Database (GAD)
EGFEM1P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EGFEM1P
genes like me logo Genes that share disorders with EGFEM1P: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EGFEM1P Gene

Publications for EGFEM1P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 67
  2. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 67
  3. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 67
  4. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 67
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67

Products for EGFEM1P Gene

Sources for EGFEM1P Gene

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