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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

EGF Gene

protein-coding   GIFtS: 73
GCID: GC04P110834

epidermal growth factor

(Previous name: epidermal growth factor (beta-urogastrone) )
 Explore 282 diseases affiliated with
EGF via our new
 Human Malady Compendium 
Biological research products
for EGF
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Epidermal Growth Factor1 2
HOMG42 5
URG2 5
Epidermal Growth Factor (Beta-Urogastrone)1
Beta-Urogastrone1
Pro-Epidermal Growth Factor2

External Ids:    HGNC: 32291   Entrez Gene: 19502   Ensembl: ENSG000001387987   OMIM: 1315305   UniProtKB: P011333   

Export aliases for EGF gene to outside databases

Previous GC identifers: GC04P111240 GC04P111104 GC04P111292 GC04P111191 GC04P106566


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for EGF:
This gene encodes a member of the epidermal growth factor superfamily. The encoded protein is synthesized as a large
precursor molecule that is proteolytically cleaved to generate the 53-amino acid epidermal growth factor peptide. This
protein acts a potent mitogenic factor that plays an important role in the growth, proliferation and differentiation
of numerous cell types. This protein acts by binding the high affinity cell surface receptor, epidermal growth factor
receptor. Defects in this gene are the cause of hypomagnesemia type 4. Dysregulation of this gene has been associated
with the growth and progression of certain cancers. Alternate splicing results in multiple transcript
variants.(provided by RefSeq, May 2010)

UniProtKB/Swiss-Prot: EGF_HUMAN, P01133
Function: EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some
fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal
convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6

summary for EGF:
The epidermal growth factor receptor (EGFR) is a receptor tyrosine kinase of the ErbB family. Four members
of the ErbB family have been identified; EGFR (ErbB1, HER1), ErbB2 (HER2), ErbB3 (HER3) and ErbB4 (HER4).
EGFR signaling is initiated by ligand binding to the extracellular ligand binding domain. This initiates
receptor homo-/hetero-dimerization and autophosphorylation by the intracellular kinase domain, resulting in
receptor activation. Following activation, phosphorylation of cytoplasmic substrates occurs and a signaling
cascade is initiated that drives many cellular responses, including changes in gene expression, cytoskeletal
rearrangement, anti-apoptosis and increased cell proliferation.

Gene Wiki entry for EGF (Epidermal growth factor)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_016354.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the EGF gene promoter:
         STAT5B   STAT1   AP-1   ATF-2   STAT5A   CREB   deltaCREB   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidEGF promoter sequence
   Search SABiosciences Chromatin IP Primers for EGF

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat EGF


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q25   Ensembl cytogenetic band:  4q25   HGNC cytogenetic band: 4q25

EGF Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
EGF gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P110834:  view genomic region     (about GC identifiers)

Start:
110,834,040 bp from pter      End:
110,934,118 bp from pter
Size:
100,079 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: EGF_HUMAN, P01133 (See protein sequence)
Recommended Name: Pro-epidermal growth factor precursor  
Size: 1207 amino acids; 133994 Da
Subunit: Interacts with EGFR and promotes EGFR dimerization. Interacts with RHBDF2 (By similarity). Interacts with
RHBDF1; may retain EGF in the endoplasmic reticulum and regulates its degradation through the endoplasmic
reticulum-associated degradation (ERAD)
Subcellular location: Membrane; Single-pass type I membrane protein
Sequence caution: Sequence=AAR84237.1; Type=Erroneous gene model prediction;
6 PDB 3D structures from and Proteopedia for EGF:
1IVO (3D)        1JL9 (3D)        1NQL (3D)        1P9J (3D)        2KV4 (3D)        3NJP (3D)    
Secondary accessions: B4DRK7 E9PBF0 Q52LZ6
Alternative splicing: 2 isoforms:  P01133-1   P01133-2   

Explore the universe of human proteins at neXtProt for EGF: NX_P01133

Post-translational modifications:

  • O-glycosylated with core 1-like and core 2-like glycans. It is uncertain if Ser-954 or Thr-955 is O-glycosylated. The
  • modification here shows glycan heterogeneity: HexHexNAc (major) and Hex2HexNAc2 (minor)1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P01133

  • EGF Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (3 alternative transcripts): 
    NP_001171601.1  NP_001171602.1  NP_001954.2  

    ENSEMBL proteins: 
     ENSP00000424316   ENSP00000265171   ENSP00000421384  
    Reactome Protein details: P01133
    Human Recombinant Protein Products: 
    EMD Millipore Purified and/or Recombinant EGF Protein
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    Novus Biologicals EGF Proteins
    Novus Biologicals EGF Lysate
    Sino Biological Recombinant Protein for EGF
    ProSpec Recombinant Protein for EGF
    Uscn Proteins for EGF

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region TAS--
    GO:0005615extracellular space IEA--
    GO:0005625soluble fraction ----
    GO:0005886plasma membrane IEA--
    GO:0016021integral to membrane IEA--


    EGF for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for EGF


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    EGF for domains           About GeneDecksing

    5/9 InterPro domains/families (see all 9):
     IPR000033 LDLR_classB_rpt
     IPR016317 Pro-epidermal_GF
     IPR001881 EGF-like_Ca-bd
     IPR000742 EG-like_dom
     IPR011042 6-blade_b-propeller_TolB-like

    Graphical View of Domain Structure for InterPro Entry P01133

    ProtoNet protein and cluster: P01133

    4 Blocks protein families:
    IPB000033 Low-density lipoprotein receptor
    IPB000152 Aspartic acid and asparagine hydroxylation site
    IPB001336 Type I EGF signature
    IPB001881 EGF-like calcium-binding


    UniProtKB/Swiss-Prot: EGF_HUMAN, P01133
    Similarity: Contains 9 EGF-like domains
    Similarity: Contains 9 LDL-receptor class B repeats


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: EGF_HUMAN, P01133
    Function: EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some
    fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal
    convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6

         Genatlas biochemistry entry for EGF:
    epidermal growth factor,6kDa,synthesized as a large preprotein,EGF membrane glycoprotein also containing nine EGF
    repeats and urogastrone

         Summary:  
    During embryonic development, EGF as signaling molecule
    affects the following cells: Column Cytotrophoblast Cells in Column Cytotrophoblast Layer, Late Retinal Progenitor Cells in Neuroblastic Layer (see all 4).

    EGF as growth factor is involved in stem cell differentiation protocols towards the derivation of the following cells: Hepatocyte-like cells, Nkx2-1 induced endoderm (see all 17).

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    hsa-miR-33a* hsa-miR-3163 hsa-miR-576-5p hsa-miR-145 hsa-miR-590-3p hsa-miR-3182
    SwitchGear 3'UTR luciferase reporter plasmidEGF 3' UTR sequence
    Inhib. RNA
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    Clone
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for EGF

    Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005154epidermal growth factor receptor binding TAS15611079
    GO:0005509calcium ion binding IEA--
    GO:0005515protein binding IPI12620237
    GO:0008083growth factor activity IDA15611079
    GO:0030297transmembrane receptor protein tyrosine kinase activator activity TAS9712850


    EGF for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for EGF:
     Decreased p24 protein expressi  Increased Salmonella enterica  

    Animal Models:
         Mouse knock-out Egftm1Dle for EGF
         8 MGI mutant phenotypes (inferred from 1 allele(MGI details for Egf):
     digestive/alimentary  endocrine/exocrine gland  growth/size  immune system  integument 
     normal  reproductive system  vision/eye 

    EGF for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/75 super-pathways (see all 75About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Apoptotic Pathways in Synovial Fibroblasts
    8/13 pathways (see all 13)
    Apoptotic Pathways in Synovial Fibroblasts1.00
    eIF2 Pathway0.60
    p53 Mediated Apoptosis0.84
    Rac1 Pathway0.58
    Mitochondrial Apoptosis0.73
    Nuclear Receptor Activation by Vitamin-A0.57
    DHA Signaling0.70
    Glioma Invasiveness0.54
    2Signaling by FGFR
    8/12 pathways (see all 12)
    Signaling by FGFR1.00
    DAP12 signaling0.83
    Downstream signaling of activated FGFR0.92
    Signaling by EGFR in Cancer0.83
    Signaling by FGFR in disease0.91
    DAP12 interactions0.76
    Signaling by ERBB20.89
    Signaling by PDGF0.72
    3PIP3 activates AKT signaling
    8/10 pathways (see all 10)
    PI-3K cascade1.00
    PI3K/AKT activation0.97
    PIP3 activates AKT signaling1.00
    GAB1 signalosome0.96
    PI3K/AKT Signaling in Cancer1.00
    Constitutive PI3K/AKT Signaling in Cancer0.88
    PI3K events in ERBB2 signaling1.00
    Signaling by SCF-KIT0.72
    4GPCR Pathway
    GPCR Pathway1.00
    Estrogen Pathway0.55
    Ras Pathway0.62
    Pancreatic Adenocarcinoma0.55
    Breast Cancer Regulation by Stathmin10.58
    Paxillin Interactions0.53
    NFAT in Immune Response0.58
    P2Y Receptor Signaling0.38
    5TGF-Beta Pathway
    TGF-Beta Pathway1.00
    JNK Pathway0.50
    MAPK Family Pathway0.60
    Regulation of eIF4 and p70S6K0.43
    JAK-STAT Pathway0.57
    SOCS Pathway0.29

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    5/13 EMD Millipore Pathways for EGF (see all 13)
        Transcription Androgen Receptor nuclear signaling
    Signal transduction PTEN pathway
    Cell adhesion PLAU signaling
    Development EGFR signaling pathway
    Translation Non-genomic (rapid) action of Androgen Receptor

    5/67 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for EGF (see all 67)
        Molecular Mechanisms of Cancer
    eIF2 Pathway
    Intracellular Calcium Signaling
    JNK Pathway
    ERK5 Signaling

    1 Cell Signaling Technology (CST) Pathway for EGF
        Tyrosine Kinases / Adaptors

    5/14 GeneGo (Thomson Reuters) Pathways for EGF (see all 14)
        Transcription Androgen Receptor nuclear signaling
    Development EGFR signaling pathway
    Development EGFR signaling via small GTPases
    Translation Regulation of EIF2 activity
    Signal transduction PTEN pathway

    5/24 BioSystems Pathways for EGF (see all 24
        Focal Adhesion
    ErbB signaling pathway
    TGF Beta Signaling Pathway
    MAPK signaling pathway
    EGFR1 Signaling Pathway

    5/41        Reactome Pathways for EGF (see all 41)
        Signaling by EGFR in Cancer
    Downstream signal transduction
    Signal Transduction
    Signaling by PDGF
    Downstream Signaling Events Of B Cell Receptor (BCR)

    1 PharmGKB Pathway for EGF
        EGFR Inhibitor Pathway, Pharmacodynamics

    5/16         Kegg Pathways  (Kegg details for EGF) (see all 16):
        MAPK signaling pathway
    ErbB signaling pathway
    Cytokine-cytokine receptor interaction
    Endocytosis
    Focal adhesion


    EGF for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for EGF

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/154 Interacting proteins for EGF (P011331, 2, 3 ENSP000002651714) via UniProtKB, MINT, STRING, and/or I2D (see all 154)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EGFRP005331, 2, 3, ENSP000002754934EBI-640857,EBI-297353 MINT-8146350 MINT-8146425 MINT-25095 MINT-8146487 MINT-8146461 MINT-8146623 MINT-8146300 MINT-8146514 MINT-8146500 MINT-8146380 MINT-8146287 MINT-6169912 I2D: score=6 STRING: ENSP00000275493
    S100A4P264472, 3, ENSP000003462944MINT-7256556 I2D: score=1 STRING: ENSP00000346294
    ERBB2P046263, ENSP000002695714I2D: score=3 STRING: ENSP00000269571
    LMNAP025453, ENSP000003572834I2D: score=2 STRING: ENSP00000357283
    MAPKAPK2P491373, ENSP000003560704I2D: score=1 STRING: ENSP00000356070
    About this table

    Gene Ontology (GO): 5/34 biological process terms (GO ID links to tree view) (see all 34):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000186activation of MAPKK activity IEA--
    GO:0001525angiogenesis IDA15611079
    GO:0002576platelet degranulation TAS--
    GO:0006260DNA replication TAS9482941
    GO:0007165signal transduction TAS--


    EGF for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    EGF for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Enzo Life Sciences drugs & compounds for EGF

    Compounds for EGF available from Tocris Bioscience    About this table
    CompoundAction CAS #
    Iressa Orally active, selective EGFR inhibitor [184475-35-2]
    GW 583340 dihydrochloridePotent dual EGFR/ErbB2 inhibitor; orally active[388082-81-3]
    PD 153035 hydrochlorideEGFR-kinase inhibitor[153436-54-5]
    AG 494Potent EGFR-kinase inhibitor[133550-35-3]
    AG 1478 hydrochlorideHighly potent EGFR-kinase inhibitor[153436-53-4]

    2 HMDB Compounds for EGF    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--
    MagnesiumMagnesium (see all 2)7439-95-4--

    2 DrugBank Compounds for EGF    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Alpha-Aminobutyric Acid-- --target--17139284 17016423 10592235
    Sucralfate-- 54182-58-0targetinducer1957124 1970337 8578218

    10/133 Novoseek chemical compound relationships for EGF gene (see all 133)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    tyrosine 89.9 1884 1689318 (6), 14642088 (6), 1801683 (6), 11459228 (5) (see all 99)
    ag 1478 89.1 95 10579343 (2), 12580917 (2), 12141529 (2), 10766877 (2) (see all 77)
    pd153035 81.2 16 9815602 (2), 11169460 (2), 11792073 (1), 19423651 (1) (see all 14)
    gefitinib 78.8 158 15083203 (6), 17311025 (4), 18691415 (4), 19380191 (4) (see all 74)
    thymidine 74.8 290 7507605 (6), 1311246 (4), 8687119 (3), 8319182 (3) (see all 99)
    cetuximab 74.6 79 18691415 (5), 19380191 (4), 17707800 (3), 12850474 (2) (see all 51)
    phosphatidylinositol 73.6 219 7515147 (5), 9886492 (4), 10801833 (4), 16728406 (3) (see all 99)
    phosphotyrosine 73.3 57 10634619 (2), 1693615 (1), 7661200 (1), 8081876 (1) (see all 48)
    pd 98,059 70.1 84 11277615 (2), 17107667 (2), 10395291 (2), 17283879 (2) (see all 63)
    vegf 69.9 648 15690202 (10), 12667326 (7), 15250102 (7), 9626350 (5) (see all 99)

    1 PharmGKB related drug/compound annotation for EGF gene
    Drug/compound PharmGKB Annotation
    cetuximabCA  
    About this table

    Search CenterWatch for drugs/clinical trials and news about EGF 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for EGF gene (3 alternative transcripts): 
    NM_001178130.1  NM_001178131.1  NM_001963.4  

    Unigene Cluster for EGF:

    Epidermal growth factor
    Hs.419815  [show with all ESTs]
    Unigene Representative Sequence: NM_001963
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000509793 ENST00000265171(uc003hzy.4 uc011cfu.2 uc011cfv.2 uc010imk.3)
    ENST00000503392 ENST00000502723 ENST00000504633 ENST00000502579 ENST00000541061
    ENST00000511228 ENST00000509996 ENST00000544918 ENST00000537316 ENST00000540840


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    6 QIAGEN miScript miRNA Assays for microRNAs that regulate EGF:
    hsa-miR-33a* hsa-miR-3163 hsa-miR-576-5p hsa-miR-145 hsa-miR-590-3p hsa-miR-3182
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    Inhib. RNA
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    Additional cDNA sequence: 

    AK299306.1 AK307734.1 AY548762.1 BC093731.1 BC113461.1 BC143357.1 JQ346088.1 X04571.1 

    8 DOTS entries:

    DT.303224  DT.95252684  DT.100018040  DT.100751605  DT.91987341  DT.92032313  DT.95158066  DT.92051525 

    24/65 AceView cDNA sequences (see all 65):

    AY548762 AA954947 AI381567 AW772286 BE501422 AU129376 BG427221 BF104993 
    BM090637 BG459974 BG460186 BG460092 BX280823 NM_001963 BX485552 BM090870 
    AI651044 AW300103 BG461255 BQ010822 CD679255 X04571 BG459705 BG460854 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    EGF expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GAGGCAGGAG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    EGF expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    4 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    Early Embryo (Zygote)Morula8-Cell EmbryoEarly Embryo
    Early Embryo (Zygote)ZygoteZygoteEarly Embryo
    EndotheliumMicrovesselsPericytesPericytes
    LungAlveoliAlveolar Epithelial Type 2 CellsLung
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 4 LifeMap Cells 
    NameCategory
    Anterior neural specified EBs (Differentiation of h...)
    Photoreceptor-like cells (Differentiation of h...)
    Definitive endoderm-like cells (A scalable, suspensi...)
    Cardiomyocyte-like cells (Spontaneous differen...)

    See EGF Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for EGF

    SOURCE GeneReport for Unigene cluster: Hs.419815

    UniProtKB/Swiss-Prot: EGF_HUMAN, P01133
    Tissue specificity: Expressed in kidney, salivary gland, cerebrum and prostate

        SABiosciences Expression via Pathway-Focused PCR Arrays including EGF (see all 14): 
              Osteogenesis in human mouse rat
              Oncogenes & Tumor Suppressor Genes in human mouse rat
              Neurogenesis in human mouse rat
              Nephrotoxicity in human mouse rat
              Growth Factors in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for EGF gene from 5/15 species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves EGF1 epidermal growth factor 65.36(n)
    55.25(a)
      408035  NM_001001292.1  NP_001001292.1 
    lizard
    (Anolis carolinensis)
    Reptilia EGF6
    --
    47(a)
    1 ↔ 1
    5(144304260-144337195)
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.271302 Danio rerio epidermal growth factor precursor (egf) more 76.93(n)    AY332224.1 
    honey bee
    (Apis mellifera)
    Insecta --
    --
    5(a)
    1 ↔ 1
    Group9.2(367282-376566)
    worm
    (Caenorhabditis elegans)
    Secernentea F14B4.16
    --
    18(a)
    1 ↔ 1
    I(9265944-9270912)


    ENSEMBL Gene Tree for EGF (if available)
    TreeFam Gene Tree for EGF (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for EGF gene
    LRP52  LRP62  LRP22  SORL12  LRP1B2  LDLR2  LRP5L2  LRP42  
    VLDLR2  NID22  NID12  LRP82  LRP12  
    12 SIMAP similar genes for EGF using alignment to 4 protein entries:     EGF_HUMAN (see all proteins):
    NRG2    EPGN    PAMR1    LDLR    LRP1B    TGFA
    AREG    LRP5L    NPNT    SNED1    DKFZp667O055    NRG4

    EGF for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 5 variations for EGF
         3 CNVs: 92300 63926 6305
         2 Indels: 59161 98842
    Human Gene Mutation Database (HGMD): EGF
    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing EGF
    DNA2.0 Custom Variant and Variant Library Synthesis for EGF

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    EGF for disorders           About GeneDecksing

    OMIM gene information: 131530   
    OMIM disorders: 611718  
    UniProtKB/Swiss-Prot: EGF_HUMAN, P01133
  • Defects in EGF are the cause of hypomagnesemia type 4 (HOMG4) [MIM:611718]; also known as renal hypomagnesemia
  • normocalciuric. HOMG4 is a disorder characterized by massive renal hypomagnesemia and normal levels of serum calcium
    and calcium excretion. Clinical features include seizures, mild-to mederate psychomotor retardation, and brisk tendon
    reflexes

    20/282 diseases for EGF (see all 282):    About MalaCards
    hypomagnesemia    acid-labile subunit    factor vii deficiency    contractural arachnodactyly
    perinatal necrotizing enterocolitis    microvillus inclusion disease    estrogen-receptor negative breast cancer    zollinger-ellison syndrome
    bronchiolo-alveolar adenocarcinoma    malignant peripheral nerve sheath tumor    congenital contractural arachnodactyly    middle ear cholesteatoma
    squamous cell carcinoma    atrioventricular septal defect    age related macular degeneration    xanthogranulomatous pyelonephritis
    graft versus host disease    non-small cell lung carcinoma    sweat gland carcinoma    glanzmann's thrombasthenia

    20/21 diseases from the University of Copenhagen DISEASES database for EGF (see all 21):
    Carcinoma     Breast cancer     Cholera     Malignant glioma
    Lung cancer     Prostate cancer     Gastrointestinal system disease     Colorectal cancer
    Pancreatic cancer     Diphtheria     Vascular disease     Ovarian cancer
    Kidney disease     Hepatocellular carcinoma     Polycystic kidney disease     Urinary bladder cancer
    Eye disease     Meningioma     Endometrial cancer     Psoriasis

    10/97 Novoseek disease relationships for EGF gene (see all 97)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    tumors 73.5 1513 2364377 (7), 2380332 (7), 1709063 (7), 2155590 (6) (see all 99)
    breast cancer 69.4 539 17940864 (6), 7749149 (4), 2032259 (4), 10554021 (4) (see all 99)
    carcinoma squamous cell 69.1 272 8137238 (3), 2346491 (3), 8638090 (3), 7529189 (3) (see all 99)
    cancer 64.3 494 7697894 (5), 2038286 (5), 1473218 (4), 16815674 (3) (see all 99)
    carcinoma 60.5 255 11288982 (3), 8321742 (3), 1528299 (3), 15958574 (3) (see all 99)
    glioma 58.9 211 10595738 (7), 19634110 (5), 17219981 (4), 12825816 (4) (see all 94)
    breast cysts 58.3 33 2249889 (3), 2141515 (3), 12779078 (2), 8368433 (2) (see all 17)
    pancreatic cancer 57.6 110 10360220 (7), 16340751 (4), 10050105 (4), 9816541 (4) (see all 57)
    glioblastoma 56.7 56 19148517 (3), 17575160 (2), 9440140 (2), 7714611 (2) (see all 33)
    prostate cancer 55.9 226 18511414 (4), 9892211 (4), 19356736 (4), 2330326 (3) (see all 99)

    Genetic Association Database (GAD): EGF
    Human Genome Epidemiology (HuGE) Navigator: EGF (130 documents)
    Tumor Gene Database (TGDB): EGF

    Export disorders for EGF gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for EGF gene, integrated from 9 sources (see all 5600):
    (articles sorted by number of sources associating them with EGF)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. No association between EGF gene polymorphism and gastric cancer. (PubMed id 16214932)1, 4, 9 Goto Y....Hamajima N. (2005)
    2. A single nucleotide polymorphism in the 5' untranslated region of the EGF gene is associated with occurrence and malignant progression of gastric cancer. (PubMed id 15860930)1, 4, 9 Hamai Y....Yasui W. (2005)
    3. Epidermal growth factor gene polymorphism is different between schizophrenia and lung cancer patients in Korean population. (PubMed id 15663953)1, 4, 9 Lim Y.J....Park Y.H. (2005)
    4. A study of five human cytokine genes in human essential hypertension. (PubMed id 12009575)1, 4, 9 Frossard P.M....Lukic M.L. (2002)
    5. EGF activates its receptor by removing interactions that autoinhibit ectodomain dimerization. (PubMed id 12620237)1, 2, 9 Ferguson K.M....Lemmon M.A. (2003)
    6. The NMR solution structure of human epidermal growth factor (hEGF) at physiological pH and its interactions with suramin. (PubMed id 21029725)1, 2 Huang H.W....Yu C. (2010)
    7. Epidermal growth factor a61g polymorphism is associated with the age of onset of schizophrenia in male patients. (PubMed id 16115648)1, 4 Hanninen K....Lehtimaki T. (2007)
    8. No association of EGF polymorphism with schizophrenia in a Japanese population. (PubMed id 15729146)1, 4 Watanabe Y....Someya T. (2005)
    9. Epidermal growth factor A61G polymorphism and cardiac autonomic control in adults. (PubMed id 15913871)1, 4 Puttonen S....Lehtimaki T. (2005)
    10. Single nucleotide polymorphisms associated with aggressive periodontitis and severe chronic periodontitis in Japanese. (PubMed id 15081423)1, 4 Suzuki A....Kamoi K. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 1950 HGNC: 3229 AceView: EGF Ensembl:ENSG00000138798 euGenes: HUgn1950
    ECgene: EGF Kegg: 1950 H-InvDB: EGF

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for EGF Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for EGF Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/egf/
    Wikipedia http://en.wikipedia.org/wiki/Epidermal_growth_factor

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for EGF gene:
    Search GeneIP for patents involving EGF

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

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    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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