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Aliases & Descriptions for EFNB3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EFL6 2, 5 | | EPLG8 2, 3, 5 | | LERK-8 1, 3 | | LERK8 2, 3, 5 | | ephrin-B3 2 |
| | | Descriptions |
|---|
| EPH-related receptor transmembrane ligand ELK-L3 3 | | EPH-related receptor tyrosine kinase ligand 8 2, 3 | | Ephrin B3 2 |
|
| | Search outside databases for aliases for EFNB3 genePrevious GC identifers: GC17U990024 GC17P008348 GC17P007551 GC17P007809 |
Summaries for EFNB3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for EFNB3: EFNB3, a member of the ephrin gene family, is important in brain development as well as in its maintenance. Moreover, since levels of EFNB3 expression were particularly high in several forebrain subregions compared to other brain subregions, it may play a pivotal role in forebrain function. The EPH and EPH-related receptors comprise the largest subfamily of receptor protein-tyrosine kinases and have been implicated in mediating developmental events, particularly in the nervous system. EPH Receptors typically have a single kinase domain and an extracellular region containing a Cys-rich domain and 2 fibronectin type III repeats. The ephrin ligands and receptors have been named by the Eph Nomenclature Committee (1997). Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to the membrane by a glycosylphosphatidylinositol linkage, and the ephrin-B (EFNB) class, which are transmembrane proteins. The Eph family of receptors are similarly divided into 2 groups based on the similarity of their extracellular domain sequences and their affinities for binding ephrin-A and ephrin-B ligands. [provided by RefSeq] UniProtKB/Swiss-Prot: EFNB3_HUMAN, Q15768Function: May play a pivotal role in forebrain function. Binds to, and induce the collapse of, commissural axons/growth cones in vitro. May play a role in constraining the orientation of longitudinally projecting axons (By similarity)Gene Wiki entry for EFNB3 |
Genomic Location for EFNB3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the EFNB3 gene 
Entrez Gene cytogenetic band: 17p13.1-p11.2 Ensembl cytogenetic band: 17p13.1 HGNC cytogenetic band: 17p13.1EFNB3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17P007549:
(about GC identifiers)
Start:
|
7,549,245 bp from pter |
End:
|
7,555,418 bp from pter |
Size:
|
6,174 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000017.9 NT_010718.15
| Proteins for EFNB3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: EFNB3_HUMAN, Q15768 (See
protein sequence)Recommended Name: Ephrin-B3 precursor Size: 340 amino acids; 35835 Da
Subunit: Interacts with GRIP1 and GRIP2. Binds to Nipah virus G protein
Subcellular location: Membrane; Single-pass type I membrane protein
Secondary accessions: O00680 Q8TBH7 Q92875Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001397.1
ENSEMBL proteins: ENSP00000226091
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for EFNB3: Assays for EFNB3: | Protein
Domains/ Families for EFNB3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q15768
ProtoNet protein and cluster: Q15768 1 Blocks protein family: IPB001799 Ephrin signature
UniProtKB/Swiss-Prot: EFNB3_HUMAN, Q15768Similarity: Belongs to the ephrin family | Gene Function for EFNB3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001406
Applied Biosystems Silencer® siRNAs for EFNB3
Sigma-Aldrich siRNA and siRNA Panels for EFNB3  Sigma-Aldrich shRNA for EFNB3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001406                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001406                                  untagged cDNA clone in CMV expression vector: NM_001406 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001406
UniProtKB/Swiss-Prot: EFNB3_HUMAN, Q15768Function: May play a pivotal role in forebrain function. Binds to, and induce the collapse of, commissural axons/growth cones in vitro. May play a role in constraining the orientation of longitudinally projecting axons (By similarity)Genatlas biochemistry entry for EFNB3:ephrin B-3,eph-related receptor tyrosine kinase,class B,ligand,involved in short-range contact-mediated axonal guidance,expressed in fetal brain,and in adult forebrain3 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Efnb3):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for EFNB3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for EFNB3 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for EFNB3 
5/32 Interacting proteins for EFNB3 (ENSP000002260913) via UniProtKB, MINT, and/or STRING (see all 32
)About this table
5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8
): About this table
|
Drugs & Compounds for EFNB3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for EFNB3 1 Novoseek chemical compound relationship for EFNB3 gene
About this table
|
Transcripts for EFNB3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001406
Sigma-Aldrich siRNA and siRNA Panels for EFNB3  Sigma-Aldrich shRNA for EFNB3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001406 REFSEQ mRNAs for EFNB3 gene: NM_001406.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001406               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001406                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001406                                  untagged cDNA clone in CMV expression vector: NM_001406  Additional cDNA sequence: AK027329.1 AK314841.1 BC022499.1 BC042944.2 U57001.1 6 DOTS entries: DT.100813533 DT.445474 DT.91680350 DT.100813537 DT.120949968 DT.120950010 24/67 AceView cDNA sequences (see all 67
):AA973977 BU859261 BU557245 BM974629 AI088793 NM_001406 BU854800 BI913360 BU554039 AA417565 BI488464 AA932672 AA291485 BU685648 BG751869 BC042944 BX352973 BM971890 AI350400 AW303554 F01548 T09017 AA055762 BG701666
highest scoring ESTs for EFNB3:AA055762 AA219737 AA291485 AA404693 AA417565 AA417681 AA485665 AA485795 AA875969 AA973977 Unigene Cluster for EFNB3: Ephrin-B3 Hs.26988 [show with all ESTs]Unigene Representative Sequence: NM_001406
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000226091
|
Expression for EFNB3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| EFNB3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for EFNB3
1 / 2 / 3 5 probe-sets matching EFNB3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTGGCGGGAT
SOURCE GeneReport for Unigene cluster: Hs.26988
Expression variation in blood from EXPOLDB for EFNB3 UniProtKB/Swiss-Prot: EFNB3_HUMAN, Q15768Tissue specificity: Highly expressed in brain; expressed in embryonic floor plate, roof plate and hindbrain segments |
Orthologs for EFNB3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for EFNB3 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for EFNB3
ENSEMBL Gene Tree for EFNB3 | Paralogs for EFNB3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for EFNB3 gene
- EFNB12 EFNB22
|
SNPs/Variants for EFNB3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for EFNB3 (up to first 250kb)
|
Disorders & Mutations for EFNB3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602297
3 Novoseek disease relationships for EFNB3 gene
About this table
Human Genome Epidemiology Navigator: EFNB3 (1 document)
|
Medical News for EFNB3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for EFNB3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/39 PubMed articles for EFNB3 gene (see all 39
):- cDNA cloning, chromosomal localization, and expression pattern of EPLG8, a new member of the EPLG gene family encoding ligands of EPH- related protein-tyrosine kinase receptors. (PubMed id 9126477)1, 2, 3, 4 Tang X.X.... Ikegaki N. (1997)
- Two key residues in ephrinB3 are critical for its use as an alternative receptor for Nipah virus. (PubMed id 16477309)3, 4 Negrete O.A....Lee B. (2006)
- Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)3, 4 Zhang Z. and Henzel W.J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- EphrinB ligands recruit GRIP family PDZ adaptor proteins into raft membrane microdomains. (PubMed id 10197531)3, 4 Brueckner K....Klein R. (1999)
- Elk-L3, a novel transmembrane ligand for the Eph family of receptor tyrosine kinases, expressed in embryonic floor plate, roof plate and hindbrain segments. (PubMed id 8808709)3, 4 Gale N.W.... Yancopoulos G.D. (1996)
- Ephrin-B3 ligand promotes glioma invasion through activation of Rac1. (PubMed id 16951161)1, 3 Nakada M....Berens M.E. (2006)
- Pathway-based evaluation of 380 candidate genes and lung cancer susceptibility suggests the importance of the cell cycle pathway. (PubMed id 18676680)3 Hosgood H.D....Lan Q. (2008)
- Host cell recognition by the henipaviruses: crystal structures of the Nipah G attachment glycoprotein and its complex with ephrin-B3. (PubMed id 18632560)3 Xu K....Nikolov D.B. (2008)
- EphB receptors regulate stem/progenitor cell proliferation, migration, and polarity during hippocampal neurogenesis. (PubMed id 18057206)3 Chumley M.J....Henkemeyer M. (2007)
|
Search for EFNB3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing EFNB3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing EFNB3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing EFNB3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for EFNB3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for EFNB3:

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Incremental update: 13 Oct 2009
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