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Aliases for EFCC1 Gene

Aliases for EFCC1 Gene

  • EF-Hand And Coiled-Coil Domain Containing 1 2 3 5
  • Coiled-Coil Domain-Containing Protein 48 3 4
  • Coiled-Coil Domain Containing 48 2 3
  • C3orf73 3 4
  • CCDC48 3 4
  • EF-Hand Domain-Containing Protein ENSP00000381169 3
  • Chromosome 3 Open Reading Frame 73 2

External Ids for EFCC1 Gene

Previous HGNC Symbols for EFCC1 Gene

  • C3orf73
  • CCDC48

Previous GeneCards Identifiers for EFCC1 Gene

  • GC03P128854
  • GC03P128937
  • GC03P129058
  • GC03P129135
  • GC03P129184

Summaries for EFCC1 Gene

GeneCards Summary for EFCC1 Gene

EFCC1 (EF-Hand And Coiled-Coil Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EFCC1 Gene

Genomics for EFCC1 Gene

Regulatory Elements for EFCC1 Gene

Promoters for EFCC1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around EFCC1 on UCSC Golden Path with GeneCards custom track

Genomic Location for EFCC1 Gene

Chromosome:
3
Start:
129,001,251 bp from pter
End:
129,040,742 bp from pter
Size:
39,492 bases
Orientation:
Plus strand

Genomic View for EFCC1 Gene

Genes around EFCC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EFCC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EFCC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EFCC1 Gene

Proteins for EFCC1 Gene

  • Protein details for EFCC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HA90-EFCC1_HUMAN
    Recommended name:
    EF-hand and coiled-coil domain-containing protein 1
    Protein Accession:
    Q9HA90
    Secondary Accessions:
    • A8MYE2

    Protein attributes for EFCC1 Gene

    Size:
    598 amino acids
    Molecular mass:
    65701 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH93800.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI12196.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for EFCC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for EFCC1 Gene

Proteomics data for EFCC1 Gene at MOPED

Post-translational modifications for EFCC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for EFCC1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for EFCC1 Gene

Domains & Families for EFCC1 Gene

Gene Families for EFCC1 Gene

Protein Domains for EFCC1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for EFCC1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9HA90

UniProtKB/Swiss-Prot:

EFCC1_HUMAN :
  • Contains 1 EF-hand domain.
Domain:
  • Contains 1 EF-hand domain.
genes like me logo Genes that share domains with EFCC1: view

Function for EFCC1 Gene

genes like me logo Genes that share phenotypes with EFCC1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EFCC1 Gene

Localization for EFCC1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EFCC1 Gene

Pathways & Interactions for EFCC1 Gene

SuperPathways for EFCC1 Gene

No Data Available

Interacting Proteins for EFCC1 Gene

Gene Ontology (GO) - Biological Process for EFCC1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EFCC1 Gene

Drugs & Compounds for EFCC1 Gene

No Compound Related Data Available

Transcripts for EFCC1 Gene

mRNA/cDNA for EFCC1 Gene

(6) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EFCC1 Gene

EF-hand and coiled-coil domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EFCC1 Gene

No ASD Table

Relevant External Links for EFCC1 Gene

GeneLoc Exon Structure for
EFCC1
ECgene alternative splicing isoforms for
EFCC1

Expression for EFCC1 Gene

mRNA expression in normal human tissues for EFCC1 Gene

mRNA differential expression in normal tissues according to GTEx for EFCC1 Gene

This gene is overexpressed in Lung (x4.1).

Protein differential expression in normal tissues from HIPED for EFCC1 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for EFCC1 Gene



SOURCE GeneReport for Unigene cluster for EFCC1 Gene Hs.134807

genes like me logo Genes that share expression patterns with EFCC1: view

Protein tissue co-expression partners for EFCC1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for EFCC1 Gene

Orthologs for EFCC1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for EFCC1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia EFCC1 35
  • 82.88 (n)
  • 77.05 (a)
EFCC1 36
  • 64 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Efcc1 35
  • 77.6 (n)
  • 74.19 (a)
Efcc1 16
Efcc1 36
  • 73 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Efcc1 35
  • 76.71 (n)
  • 72.02 (a)
dog
(Canis familiaris)
Mammalia EFCC1 36
  • 69 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia EFCC1 36
  • 49 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 71 (a)
OneToMany
-- 36
  • 58 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia EFCC1 36
  • 98 (a)
OneToOne
CCDC48 35
  • 96.1 (n)
  • 94.81 (a)
chicken
(Gallus gallus)
Aves EFCC1 36
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia EFCC1 36
  • 42 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii AL929022.2 36
  • 30 (a)
OneToOne
Species with no ortholog for EFCC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for EFCC1 Gene

ENSEMBL:
Gene Tree for EFCC1 (if available)
TreeFam:
Gene Tree for EFCC1 (if available)

Paralogs for EFCC1 Gene

No data available for Paralogs for EFCC1 Gene

Variants for EFCC1 Gene

Sequence variations from dbSNP and Humsavar for EFCC1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs3732430 - 129,037,110(+) GCTCC(A/G)GGACC reference, missense
rs900314 -- 129,031,714(+) CCTGC(A/G)TTGCT intron-variant
rs900382 -- 129,032,375(+) AGGCA(C/T)GGTGG intron-variant
rs1531807 -- 129,029,305(+) AGGGA(A/C)ATGGA intron-variant
rs1972301 -- 129,028,921(+) caggc(A/G)tgagc intron-variant

Variation tolerance for EFCC1 Gene

Gene Damage Index Score: 12.54; 94.42% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for EFCC1 Gene

HapMap Linkage Disequilibrium report
EFCC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for EFCC1 Gene

Disorders for EFCC1 Gene

Relevant External Links for EFCC1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EFCC1

No disorders were found for EFCC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EFCC1 Gene

Publications for EFCC1 Gene

  1. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 3 4 67
  2. The global gene-expression profiles of U-937 human macrophages treated with Tat peptide and Tat-FITC conjugate. (PMID: 22632162) Lin C.W. … Jan M.S. (J Drug Target 2012) 3
  3. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3

Products for EFCC1 Gene

Sources for EFCC1 Gene

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