Free for academic non-profit institutions. Other users need a Commercial license

Aliases for EFCAB6-AS1 Gene

Subcategory (RNA class) for EFCAB6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EFCAB6-AS1 Gene

  • EFCAB6 Antisense RNA 1 2 3 5
  • EFCAB6 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CITF22-123F2.1 3

External Ids for EFCAB6-AS1 Gene

Previous GeneCards Identifiers for EFCAB6-AS1 Gene

  • GC00U933346
  • GC22P043913

Summaries for EFCAB6-AS1 Gene

GeneCards Summary for EFCAB6-AS1 Gene

EFCAB6-AS1 (EFCAB6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EFCAB6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EFCAB6-AS1 Gene

Genomics for EFCAB6-AS1 Gene

Regulatory Elements for EFCAB6-AS1 Gene

Enhancers for EFCAB6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H043481 0.7 Ensembl ENCODE 0.3 -34.2 -34207 1 CTCF ZIC2 RAD21 GC22P043447 EFCAB6-AS1
GH22H043480 0.4 Ensembl 0.3 -35.9 -35907 0 MAX RUNX3 SERHL2 GC22P043447 EFCAB6-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EFCAB6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for EFCAB6-AS1 Gene

Chromosome:
22
Start:
43,516,107 bp from pter
End:
43,537,117 bp from pter
Size:
21,011 bases
Orientation:
Plus strand

Genomic View for EFCAB6-AS1 Gene

Genes around EFCAB6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EFCAB6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EFCAB6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EFCAB6-AS1 Gene

Proteins for EFCAB6-AS1 Gene

Post-translational modifications for EFCAB6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EFCAB6-AS1 Gene

Domains & Families for EFCAB6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EFCAB6-AS1 Gene

Function for EFCAB6-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for EFCAB6-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EFCAB6-AS1 Gene

Localization for EFCAB6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EFCAB6-AS1 Gene

Pathways & Interactions for EFCAB6-AS1 Gene

SuperPathways for EFCAB6-AS1 Gene

No Data Available

Interacting Proteins for EFCAB6-AS1 Gene

Gene Ontology (GO) - Biological Process for EFCAB6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EFCAB6-AS1 Gene

Drugs & Compounds for EFCAB6-AS1 Gene

No Compound Related Data Available

Transcripts for EFCAB6-AS1 Gene

mRNA/cDNA for EFCAB6-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EFCAB6-AS1 Gene

EFCAB6 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for EFCAB6-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for EFCAB6-AS1 Gene

No ASD Table

Relevant External Links for EFCAB6-AS1 Gene

GeneLoc Exon Structure for
EFCAB6-AS1
ECgene alternative splicing isoforms for
EFCAB6-AS1

Expression for EFCAB6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EFCAB6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EFCAB6-AS1 Gene

This gene is overexpressed in Testis (x10.6) and Brain - Cortex (x4.2).

SOURCE GeneReport for Unigene cluster for EFCAB6-AS1 Gene:

Hs.627997
genes like me logo Genes that share expression patterns with EFCAB6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EFCAB6-AS1 Gene

Orthologs for EFCAB6-AS1 Gene

Evolution for EFCAB6-AS1 Gene

ENSEMBL:
Gene Tree for EFCAB6-AS1 (if available)
TreeFam:
Gene Tree for EFCAB6-AS1 (if available)

No data available for Orthologs for EFCAB6-AS1 Gene

Paralogs for EFCAB6-AS1 Gene

No data available for Paralogs for EFCAB6-AS1 Gene

Variants for EFCAB6-AS1 Gene

Sequence variations from dbSNP and Humsavar for EFCAB6-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000014934 -- 43,521,321(+) GGTCA(C/T)GTAGA intron-variant
rs1000036590 -- 43,515,560(+) TGGCA(A/C)TGCCA upstream-variant-2KB
rs1000065260 -- 43,535,284(+) CTCAG(A/C)CCTAT intron-variant, nc-transcript-variant
rs1000188110 -- 43,527,346(+) TCACA(G/T)GGAGG intron-variant
rs1000351150 -- 43,524,391(+) GCATG(A/G)TTTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EFCAB6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1364206 CNV deletion 17803354
esv2724316 CNV deletion 23290073
esv2724318 CNV deletion 23290073
nsv1058659 CNV loss 25217958
nsv459892 CNV gain 19166990
nsv471205 CNV gain 18288195
nsv473935 CNV novel sequence insertion 20440878
nsv473998 CNV novel sequence insertion 20440878
nsv589098 CNV gain 21841781

Relevant External Links for EFCAB6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EFCAB6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EFCAB6-AS1 Gene

Disorders for EFCAB6-AS1 Gene

Relevant External Links for EFCAB6-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EFCAB6-AS1

No disorders were found for EFCAB6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EFCAB6-AS1 Gene

Publications for EFCAB6-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for EFCAB6-AS1 Gene

Sources for EFCAB6-AS1 Gene

Content
Loading form....