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Aliases for EFCAB14-AS1 Gene

Subcategory (RNA class) for EFCAB14-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EFCAB14-AS1 Gene

  • EFCAB14 Antisense RNA 1 2 3 5
  • KIAA0494 Antisense RNA 1 (Non-Protein Coding) 2
  • KIAA0494 Antisense RNA 1 2
  • KIAA0494-AS1 3

External Ids for EFCAB14-AS1 Gene

Previous HGNC Symbols for EFCAB14-AS1 Gene

  • KIAA0494-AS1

Previous GeneCards Identifiers for EFCAB14-AS1 Gene

  • GC01P047141

Summaries for EFCAB14-AS1 Gene

GeneCards Summary for EFCAB14-AS1 Gene

EFCAB14-AS1 (EFCAB14 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EFCAB14-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EFCAB14-AS1 Gene

Genomics for EFCAB14-AS1 Gene

Regulatory Elements for EFCAB14-AS1 Gene

Enhancers for EFCAB14-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H046178 1.6 Ensembl ENCODE dbSUPER 31.8 -491.6 -491552 6 HDGF PKNOX1 FOXA2 ARNT SIN3A ARID4B FEZF1 DMAP1 YBX1 ZNF2 GPBP1L1 TOE1 RPL7AP16 LRRC41 EFCAB14-AS1 LURAP1 RPS15AP10 CCDC163 CCDC17 NSUN4
GH01H046130 1.2 ENCODE 36.8 -540.7 -540735 5 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A LRRC41 TOE1 GPBP1L1 RPL7AP16 EFCAB14-AS1 RPS15AP10 TMEM69 CCDC163 MAST2 MOB3C
GH01H046717 1.4 ENCODE dbSUPER 31.4 +44.7 44749 3 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 LRRC41 EFCAB14-AS1 EFCAB14 NSUN4 TEX38 LINC01389 CYP4B1 MOB3C NENFP1 ATPAF1
GH01H046246 1.4 FANTOM5 ENCODE 30.1 -426.0 -426027 3 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 LRRC41 TOE1 GPBP1L1 EFCAB14-AS1 NSUN4 NASP MUTYH RPL7AP16 IPP RPS15AP10
GH01H046519 1.6 FANTOM5 Ensembl ENCODE 25.9 -152.4 -152429 3 HNRNPUL1 HDGF PKNOX1 FOXA2 ARNT SIN3A ZNF766 CBX5 FOS REST EFCAB14-AS1 DMBX1 GPBP1L1 LRRC41 RPL7AP16 KNCN EFCAB14 TEX38 ATPAF1 MKNK1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EFCAB14-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for EFCAB14-AS1 Gene

Chromosome:
1
Start:
46,674,036 bp from pter
End:
46,692,098 bp from pter
Size:
18,063 bases
Orientation:
Plus strand

Genomic View for EFCAB14-AS1 Gene

Genes around EFCAB14-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EFCAB14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EFCAB14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EFCAB14-AS1 Gene

Proteins for EFCAB14-AS1 Gene

Post-translational modifications for EFCAB14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EFCAB14-AS1 Gene

Domains & Families for EFCAB14-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EFCAB14-AS1 Gene

Function for EFCAB14-AS1 Gene

Phenotypes From GWAS Catalog for EFCAB14-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EFCAB14-AS1 Gene

Localization for EFCAB14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EFCAB14-AS1 Gene

Pathways & Interactions for EFCAB14-AS1 Gene

SuperPathways for EFCAB14-AS1 Gene

No Data Available

Interacting Proteins for EFCAB14-AS1 Gene

Gene Ontology (GO) - Biological Process for EFCAB14-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EFCAB14-AS1 Gene

Drugs & Compounds for EFCAB14-AS1 Gene

No Compound Related Data Available

Transcripts for EFCAB14-AS1 Gene

mRNA/cDNA for EFCAB14-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EFCAB14-AS1 Gene

EFCAB14 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EFCAB14-AS1 Gene

No ASD Table

Relevant External Links for EFCAB14-AS1 Gene

GeneLoc Exon Structure for
EFCAB14-AS1
ECgene alternative splicing isoforms for
EFCAB14-AS1

Expression for EFCAB14-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EFCAB14-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EFCAB14-AS1 Gene

This gene is overexpressed in Testis (x13.7).

SOURCE GeneReport for Unigene cluster for EFCAB14-AS1 Gene:

Hs.568643
genes like me logo Genes that share expression patterns with EFCAB14-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EFCAB14-AS1 Gene

Orthologs for EFCAB14-AS1 Gene

Evolution for EFCAB14-AS1 Gene

ENSEMBL:
Gene Tree for EFCAB14-AS1 (if available)
TreeFam:
Gene Tree for EFCAB14-AS1 (if available)

No data available for Orthologs for EFCAB14-AS1 Gene

Paralogs for EFCAB14-AS1 Gene

No data available for Paralogs for EFCAB14-AS1 Gene

Variants for EFCAB14-AS1 Gene

Sequence variations from dbSNP and Humsavar for EFCAB14-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000167873 -- 46,673,425(+) TAGCT(G/T)CAATG upstream-variant-2KB, reference, missense
rs1000267119 -- 46,676,706(+) TGCCA(C/G)GCTAA intron-variant, utr-variant-3-prime
rs1000274259 -- 46,674,062(+) GCCAA(A/T)TGGAT intron-variant, nc-transcript-variant, downstream-variant-500B
rs1000425209 -- 46,683,841(+) AGATG(A/G)TGTAG intron-variant
rs1000501931 -- 46,679,427(+) TCCTG(C/T)GTAGC intron-variant

Relevant External Links for EFCAB14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EFCAB14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EFCAB14-AS1 Gene

Disorders for EFCAB14-AS1 Gene

Relevant External Links for EFCAB14-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EFCAB14-AS1

No disorders were found for EFCAB14-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EFCAB14-AS1 Gene

Publications for EFCAB14-AS1 Gene

  1. Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy. (PMID: 22095909) Lange CM … Swiss Hepatitis C Cohort Study Group (Hepatology (Baltimore, Md.) 2012) 3 60

Products for EFCAB14-AS1 Gene

Sources for EFCAB14-AS1 Gene

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