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Aliases for EFCAB14-AS1 Gene

Subcategory (RNA class) for EFCAB14-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EFCAB14-AS1 Gene

  • EFCAB14 Antisense RNA 1 2 3 5
  • KIAA0494 Antisense RNA 1 (Non-Protein Coding) 2
  • KIAA0494 Antisense RNA 1 2
  • KIAA0494-AS1 3

External Ids for EFCAB14-AS1 Gene

Previous HGNC Symbols for EFCAB14-AS1 Gene

  • KIAA0494-AS1

Previous GeneCards Identifiers for EFCAB14-AS1 Gene

  • GC01P047141

Summaries for EFCAB14-AS1 Gene

GeneCards Summary for EFCAB14-AS1 Gene

EFCAB14-AS1 (EFCAB14 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EFCAB14-AS1 Gene

Genomics for EFCAB14-AS1 Gene

Regulatory Elements for EFCAB14-AS1 Gene

Enhancers for EFCAB14-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F046338 0.2 ENCODE 28.1 -332.5 -332488 5.5 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D NSUN4 EFCAB14-AS1 GPBP1L1 RPL7AP16 LURAP1 RPS15AP10 UQCRH LRRC41 CYP4B1 NENFP1
GH01F047312 0.2 ENCODE 26.8 +640.0 640004 3.1 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 FOS EFCAB14-AS1 CMPK1 ENSG00000272491 FOXE3 STIL GC01M047303
GH01F046130 0.6 ENCODE 26 -540.7 -540735 5.6 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TOE1 GPBP1L1 RPL7AP16 CCDC163 MAST2 EFCAB14-AS1 RPS15AP10 TMEM69 ZSWIM5 TSPAN1
GH01F047178 0.6 ENCODE 22.8 +506.8 506827 4.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 YBX1 ZNF143 FOS EFCAB14-AS1 PDZK1IP1 TAL1 ENSG00000226252 CYP4B1 LINC00853 CYP4A22 CYP4A22-AS1
GH01F046246 1.1 FANTOM5 ENCODE 22.6 -426.0 -426027 3.1 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 TOE1 GPBP1L1 EFCAB14-AS1 RPL7AP16 IPP RPS15AP10 TMEM69 NSUN4 RAD54L GC01M046227
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around EFCAB14-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for EFCAB14-AS1 Gene

Chromosome:
1
Start:
46,674,036 bp from pter
End:
46,692,098 bp from pter
Size:
18,063 bases
Orientation:
Plus strand

Genomic View for EFCAB14-AS1 Gene

Genes around EFCAB14-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EFCAB14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EFCAB14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EFCAB14-AS1 Gene

Proteins for EFCAB14-AS1 Gene

Post-translational modifications for EFCAB14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EFCAB14-AS1 Gene

Domains & Families for EFCAB14-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EFCAB14-AS1 Gene

Function for EFCAB14-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EFCAB14-AS1 Gene

Localization for EFCAB14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EFCAB14-AS1 Gene

Pathways & Interactions for EFCAB14-AS1 Gene

SuperPathways for EFCAB14-AS1 Gene

No Data Available

Interacting Proteins for EFCAB14-AS1 Gene

Gene Ontology (GO) - Biological Process for EFCAB14-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EFCAB14-AS1 Gene

Transcripts for EFCAB14-AS1 Gene

mRNA/cDNA for EFCAB14-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EFCAB14-AS1 Gene

EFCAB14 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EFCAB14-AS1 Gene

No ASD Table

Relevant External Links for EFCAB14-AS1 Gene

GeneLoc Exon Structure for
EFCAB14-AS1
ECgene alternative splicing isoforms for
EFCAB14-AS1

Expression for EFCAB14-AS1 Gene

mRNA expression in normal human tissues for EFCAB14-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EFCAB14-AS1 Gene

This gene is overexpressed in Testis (x13.7).

SOURCE GeneReport for Unigene cluster for EFCAB14-AS1 Gene:

Hs.568643
genes like me logo Genes that share expression patterns with EFCAB14-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for EFCAB14-AS1 Gene

Orthologs for EFCAB14-AS1 Gene

Evolution for EFCAB14-AS1 Gene

ENSEMBL:
Gene Tree for EFCAB14-AS1 (if available)
TreeFam:
Gene Tree for EFCAB14-AS1 (if available)

No data available for Orthologs for EFCAB14-AS1 Gene

Paralogs for EFCAB14-AS1 Gene

No data available for Paralogs for EFCAB14-AS1 Gene

Variants for EFCAB14-AS1 Gene

Sequence variations from dbSNP and Humsavar for EFCAB14-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1025806 -- 46,673,431(-) GCTTG(A/G)CATTG upstream-variant-2KB, reference, missense
rs1048351 -- 46,677,808(-) AGGGA(A/G)TAGAC intron-variant, utr-variant-3-prime
rs1048380 -- 46,676,866(-) CTTTA(C/T)ATGAT intron-variant, utr-variant-3-prime
rs10567663 -- 46,678,821(+) ATATT(-/AAAAAAAAAAA)AAAAA intron-variant
rs10654448 -- 46,681,673(+) TTTTT(-/T/TT)TYTTT intron-variant

Relevant External Links for EFCAB14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EFCAB14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EFCAB14-AS1 Gene

Disorders for EFCAB14-AS1 Gene

Relevant External Links for EFCAB14-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EFCAB14-AS1

No disorders were found for EFCAB14-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EFCAB14-AS1 Gene

Publications for EFCAB14-AS1 Gene

  1. Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy. (PMID: 22095909) Lange C.M. … Bochud P.Y. (Hepatology 2012) 3 64

Products for EFCAB14-AS1 Gene

Sources for EFCAB14-AS1 Gene

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