EEF1A1 Gene
protein-coding GIFtS: 62
GC06M074282
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eukaryotic translation elongation factor 1 alpha 1 (Previous name: leukocyte receptor cluster (LRC) member 7 ) Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: EF1A, EEF1A, LENG7)
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Aliases & Descriptions for EEF1A1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CCS-3 2 | | CCS3 2 | | EEF-1 2 | | EEF1A 2, 3 | | EF-1-alpha-1 3 | | EF-Tu 2, 3 | | EF1A 2, 3, 5 | | FLJ25721 2 | | GRAF-1EF 2 | | HNGC:16303 2 | | LENG7 2, 3 | | MGC102687 2 | | MGC131894 2 | | MGC16224 2 | | OTTHUMP00000016736 2 | | OTTHUMP00000063804 2 | | OTTHUMP00000063805 2 | | PTI1 2 | | eEF1A-1 2, 3 |
| | | Descriptions |
|---|
| CTCL tumor antigen 2 | | EF1a-like protein 2 | | Elongation factor 1 A-1 3 | | Elongation factor Tu 2, 3 | | Leukocyte receptor cluster member 7 3 | | cervical cancer suppressor 3 2 | | elongation factor 1 alpha subunit 2 | | elongation factor 1-alpha 2 | | eukaryotic translation elongation factor 1 alpha 1 2 | | eukaryotic translation elongation factor 1 alpha 1-like 14 2 | | glucocorticoid receptor AF-1 specific elongation factor 2 | | leukocyte receptor cluster (LRC) member 7 1, 2 | | prostate tumor-inducing protein 1 2 | | translation elongation factor 1 alpha 1-like 14 2 |
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| | Search outside databases for aliases for EEF1A1 genePrevious GC identifers: GC06M074183 GC06M074221 GC06M074222 |
Summaries for EEF1A1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for EEF1A1: This gene encodes an isoform of the alpha subunit of the elongation factor-1 complex, which is responsible for the enzymatic delivery of aminoacyl tRNAs to the ribosome. This isoform (alpha 1) is expressed in brain, placenta, lung, liver, kidney, and pancreas, and the other isoform (alpha 2) is expressed in brain, heart and skeletal muscle. This isoform is identified as an autoantigen in 66% of patients with Felty syndrome. This gene has been found to have multiple copies on many chromosomes, some of which, if not all, represent different pseudogenes. [provided by RefSeq] UniProtKB/Swiss-Prot: EF1A1_HUMAN, P68104Function: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesisGene Wiki entry for EEF1A1 (Eukaryotic_translation_elongation_factor_1_alpha_1) |
Genomic Location for EEF1A1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the EEF1A1 gene 
Entrez Gene cytogenetic band: 6q14.1 Ensembl cytogenetic band: 6q13 HGNC cytogenetic band: 6q14.1EEF1A1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M074282:
(about GC identifiers)
Start:
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74,282,194 bp from pter |
End:
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74,288,344 bp from pter |
Size:
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6,151 bases |
Orientation:
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minus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007299.12
| Proteins for EEF1A1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: EF1A1_HUMAN, P68104 (See
protein sequence)Recommended Name: Elongation factor 1-alpha 1 Size: 462 amino acids; 50141 Da
Subunit: Found in a nuclear export complex with XPO5, EEF1A1, Ran and aminoacylated tRNA. Interacts with XPO5. May interact with ERGIC2
Subcellular location: Cytoplasm
PDB structures from and Proteopedia :1SYW (3D)
 
Secondary accessions: P04719 P04720Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001393.1
ENSEMBL proteins: ENSP00000359273 ENSP00000350920 ENSP00000339053 ENSP00000339063 ENSP00000330054 ENSP00000348651
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: EEF1A1 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for EEF1A1: Assays for EEF1A1: | Protein
Domains/ Families for EEF1A1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P68104
ProtoNet protein and cluster: P68104 UniProtKB/Swiss-Prot: EF1A1_HUMAN, P68104Similarity: Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily | Gene Function for EEF1A1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001402
Applied Biosystems Silencer® siRNAs for EEF1A1
Sigma-Aldrich siRNA for EEF1A1  Sigma-Aldrich shRNA for EEF1A1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001402                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001402                                  untagged cDNA clones in CMV expression vector (see all 7): NM_001402 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001402
UniProtKB/Swiss-Prot: EF1A1_HUMAN, P68104Function: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesisGenatlas biochemistry entry for EEF1A1:eukaryotic translation elongation factor 1,alpha 1,ubiquitously expressed3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Eef1a1):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for EEF1A1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
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Gene Network CentralTM Interacting Genes and Proteins Network for EEF1A1 
5/478 Interacting proteins for EEF1A1 (ENSP000003300543 P681041, 2) via UniProtKB, MINT, and/or STRING (see all 478
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0006414 | translational elongation |
TAS | 8812466 | About this table
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Drugs & Compounds for EEF1A1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
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Browse Tocris compounds for EEF1A1 10/34 Novoseek chemical compound relationships for EEF1A1 gene (see all 34
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| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| aminoacyl-trna |
90.58 |
92 |
2011527 (3), 12379845 (3), 15680978 (3), 2110000 (3) (see all 45) |
| gtp |
82.85 |
160 |
18773979 (4), 2011527 (3), 15952884 (3), 2157708 (3) (see all 77) |
| gdp |
82.56 |
59 |
2110000 (3), 8665868 (2), 18773979 (2), 8722020 (2) (see all 38) |
| ge2270a |
79.44 |
3 |
8494369 (1), 9209782 (1), 12370016 (1) |
| pulvomycin |
78.54 |
5 |
15581367 (3), 9405422 (2) |
| trna |
76.21 |
37 |
18336835 (3), 18221514 (2), 16601123 (2), 12354112 (2) (see all 24) |
| smpb |
72.59 |
9 |
16601123 (4), 11904186 (1), 11694632 (1), 16381838 (1) |
| xanthosine 5'-triphosphate |
68.32 |
1 |
8446899 (1) |
| anticodon |
62.88 |
7 |
10397336 (1), 16890341 (1), 11395413 (1), 16601123 (1) (see all 5) |
| trna(phe) |
58.98 |
3 |
2190631 (1), 12354112 (1), 10677222 (1) |
About this table
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Transcripts for EEF1A1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001402
Sigma-Aldrich siRNA for EEF1A1  Sigma-Aldrich shRNA for EEF1A1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001402 REFSEQ mRNAs for EEF1A1 gene: NM_001402.5
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001402               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001402                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001402                                  untagged cDNA clones in CMV expression vector (see all 7): NM_001402  Additional cDNA sequence: AK300922.1 24/1155 DOTS entries (see all 1155
): DT.100894282 DT.100748056 DT.92071614 DT.92071332 DT.100893975 DT.100770577 DT.100894339 DT.91892031 DT.101962924 DT.100747923 DT.100894535 DT.85101477 DT.100894180 DT.100894204 DT.92342128 DT.91994360 DT.95377109 DT.95377203 DT.95376680 DT.97870655 DT.100894067 DT.100894270 DT.100857960 DT.100894582 24/2606 AceView cDNA sequences (see all 2606
):CR621126 BQ020166 CB123716 CB134105 CR626129 CR590677 CR593301 CR601574 BQ316373 CR592337 CR605055 BE156258 CR611142 CR609972 BC063511 CR591440 CR594392 AI905189 CB134168 CR603848 CR605359 CR614121 AI630170 CR593781
highest scoring ESTs for EEF1A1:AA971886 AK024888 AK026650 AK055058 AK098510 AK098623 AK127384 AW779866 BC008587 BC009875 Unigene Clusters for EEF1A1: Eukaryotic translation elongation factor 1 alpha 1 Hs.586423 [show with all ESTs], Hs.644639 [show with all ESTs], Hs.713109 [show with all ESTs]Unigene Representative Sequences: NM_001402, AK292639, AK300922
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for EEF1A1
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for EEF1A1
6 Ensembl transcripts including schematic representations: ENST00000340017
ENST00000358190
ENST00000309268
ENST00000316292
ENST00000331523
ENST00000356303
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Expression for EEF1A1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| EEF1A1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for EEF1A1
1 / 2 / 3 19 probe-sets matching EEF1A1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene clusters: Hs.586423 Hs.644639 Hs.713109
Expression variation in blood from EXPOLDB for EEF1A1 UniProtKB/Swiss-Prot: EF1A1_HUMAN, P68104Tissue specificity: Brain, placenta, lung, liver, kidney, pancreas but barely detectable in heart and skeletal muscle |
Orthologs for EEF1A1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
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Orthologs for EEF1A1 gene from 5/16 species (see all 16
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
EEF1A11 |
-- |
eukaryotic translation elongation factor 1 alpha 1 |
93.58(n) 99.78(a) |
608325 XM_845314.1 XP_850407.1 |
chimpanzee (Pan troglodytes) |
EEF1A11 |
-- |
eukaryotic translation elongation factor 1 alpha 1 |
99.86(n) 100(a) |
494136 NM_001009165.1 NP_001009165.1 |
cow (Bos taurus) |
EEF1A11 |
-- |
eukaryotic translation elongation factor 1 alpha 1 |
91.77(n) 99.78(a) |
784131 XM_001249987.1 XP_001249988.1 |
rat (Rattus norvegicus) |
Eef1a2l11 |
-- |
eukaryotic translation elongation factor 1 alpha 2 more |
91.34(n) 99.57(a) |
29652 NM_033539.1 NP_284925.1 |
mouse (Mus musculus) |
Eef1a15 |
9 |
eukaryotic translation elongation factor 1 alpha 1 |
-- |
X13661
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About this table Species with no ortholog for EEF1A1
ENSEMBL Gene Tree for EEF1A1 | Paralogs for EEF1A1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for EEF1A1 gene
- EEF1A22
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SNPs/Variants for EEF1A1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
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HapMap Linkage Disequilibrium images for EEF1A1 (up to first 250kb)
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Disorders & Mutations for EEF1A1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
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OMIM: 130590
10/16 Novoseek disease relationships for EEF1A1 gene (see all 16
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| mimicry |
42.79 |
3 |
12370017 (1), 15317456 (1) |
| prostate carcinoma |
15.29 |
15 |
16707856 (4), 8988032 (3), 7542776 (3), 9465091 (1) (see all 5) |
| sarcoma rous |
14.95 |
2 |
16099414 (1), 9099894 (1) |
| shock |
6.88 |
8 |
12417652 (1), 12641431 (1), 12747404 (1), 15378750 (1) (see all 8) |
| necrosis |
2.89 |
1 |
18688046 (1) |
| vesicular stomatitis |
1.18 |
1 |
12529558 (1) |
| tuberculosis |
0.00 |
3 |
11077990 (3) |
| cancer |
0.00 |
11 |
12869201 (3), 9465091 (2), 16689924 (1), 15290352 (1) (see all 7) |
| carcinoma |
0.00 |
5 |
7542776 (2), 16707856 (1), 15716006 (1) |
| tumors |
0.00 |
18 |
8988032 (2), 10216950 (2), 10572178 (1), 11594566 (1) (see all 10) |
About this table
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Medical News for EEF1A1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for EEF1A1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/328 PubMed articles for EEF1A1 gene (see all 328
):- Exp5 exports eEF1A via tRNA from nuclei and synergizes with other transport pathways to confine translation to the cytoplasm. (PubMed id 12426392)1, 3, 4 Bohnsack M.T....Gorlich D. (2002)
- Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. (PubMed id 16916647)3, 4 Kim S.C.... Zhao Y. (2006)
- Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455)3, 4 Rush J.... Comb M.J. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Exportin-5-mediated nuclear export of eukaryotic elongation factor 1A and tRNA. (PubMed id 12426393)3, 4 Calado A.... Kutay U. (2002)
- Extensive gene duplications and a large inversion characterize the human leukocyte receptor cluster. (PubMed id 10941842)2, 3 Wende H....Ziegler A. (2000)
- Assignment of human elongation factor 1alpha genes: EEF1A maps to chromosome 6q14 and EEF1A2 to 20q13.3. (PubMed id 8812466)2, 3 Lund A....Tommerup N. (1996)
- Retropseudogenes constitute the major part of the human elongation factor 1 alpha gene family. (PubMed id 2183196)3, 4 Madsen H.O.... Hjorth J.P. (1990)
- Murine elongation factor 1 alpha (EF-1 alpha) is posttranslationally modified by novel amide-linked ethanolamine-phosphoglycerol moieties. Addition of ethanolamine-phosphoglycerol to specific glutamic acid residues on EF-1 alpha. (PubMed id 2569467)3, 4 Whiteheart S.W.... Hart G.W. (1989)
- Isolation and characterization of the human chromosomal gene for polypeptide chain elongation factor-1 alpha. (PubMed id 2564392)3, 4 Uetsuki T.... Kaziro Y. (1989)
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Search for EEF1A1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing EEF1A1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing EEF1A1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing EEF1A1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| About This Section
| --
| Services for EEF1A1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for EEF1A1:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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