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Aliases & Descriptions for EED
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases HEED 1 , 2 WAIT-1 1 , 3 WAIT1 2 , 5 hEED 3
Descriptions WD protein associating with integrin cytoplasmic tails 1 2 , 3 embryonic ectoderm development 2
Search outside databases for aliases for EED genePrevious GC identifers: GC11P088282 GC11P087494 GC11P086178 GC11P085682
Summaries for EED (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for EED : This gene encodes a member of the Polycomb-group (PcG) family. PcG family members form multimericprotein complexes, which are involved in maintaining the transcriptional repressive state of genesover successive cell generations. This protein interacts with enhancer of zeste 2, the cytoplasmictail of integrin beta7, immunodeficiency virus type 1 (HIV-1) MA protein, and histone deacetylaseproteins. This protein mediates repression of gene activity through histone deacetylation, and mayact as a specific regulator of integrin function. Two transcript variants encoding distinctisoforms have been identified for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: EED_HUMAN, O75530 Function : Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected targetgene. The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNAmethyltransferases, thereby linking two epigenetic repression systems. Genes repressed by thePRC2/EED-EZH2 complex include HOXC8, HOXA9, MYT1 and CDKN2A
Gene Wiki entry for EED
Genomic Location for EED
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the EED gene Entrez Gene cytogenetic band: 11q14.2-q22.3 Ensembl cytogenetic band: 11q14.2 HGNC cytogenetic band: 11q14.2-q22.3 EED Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P085633:
(about GC identifiers )
Start:
85,633,463 bp from pter
End:
85,667,429 bp from pter
Size:
33,967 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_033927.7 Proteins for EED
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
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Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: EED_HUMAN, O75530 (See
protein sequence )Recommended Name: Polycomb protein EED Size : 441 amino acids; 50198 Da
Subunit : Interacts with MLL (By similarity). Component of the PRC2/EED-EZH2 complex, which includesEED, EZH2, SUZ12, RBBP4 and RBBP7 and possibly AEBP2. The minimum components required formethyltransferase activity of the PRC2/EED-EZH2 complex are EED, EZH2 and SUZ12. Component of thePRC2/EED-EZH1 complex, which includes EED, EZH1, SUZ12, RBBP4 and AEBP2. The PRC2 complex may alsointeract with DNMT1, DNMT3A, DNMT3B and PHF1 via the EZH2 subunit and with SIRT1 via the SUZ12subunit. Interacts with HDAC, HDAC2, histone H1 and YY1. May interact with ITGA4, ITGAE and ITGB7.May interact with the MA protein of HIV-1
Subcellular location : Nucleus. Note=Transiently colocalizes with XIST at inactive X chromosomes
Developmental stage : Expression peaks at the G1/S phase boundary
Caution : Two variants of the PRC2 complex have been described, termed PRC3 and PRC4. Each of thethree complexes may include a different complement of EED isoforms, although the precise sequencesof the isoforms in each complex have not been determined. The PRC2 and PRC4 complexes may alsomethylate 'Lys-26' of histone H1 in addition to 'Lys-27' of histone H3 (PubMed:15099518 andPubMed:15684044), although other studies have demonstrated no methylation of 'Lys-26' of histoneH1 by PRC2 (PubMed:16431907)
Secondary accessions : A8K7V5 O00149 Q6NTH2 Q7LDA5 Q7LDG8 Q86VV2 Q9UNY7Alternative splicing, Alternative initiation : 3 isoforms : O75530-1 O75530-2 O75530-3 (Additional isoforms may be produced by alternative initiation, both from non-canonical start codons upstream of the initiator methionine displayed and from other canonical start codons downstream of that displayed (PubMed:15099518 and PubMed:15684044). The precise sites of translation initiation have not been unambiguously identified)
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_003788.2 NP_694536.1 ENSEMBL proteins: ENSP00000263360 ENSP00000338186 ENSP00000315587 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): EED 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for EED: Assays for EED:
Protein
Domains/ Families for EED(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O75530 ProtoNet protein and cluster: O75530
UniProtKB/Swiss-Prot: EED_HUMAN, O75530 Similarity : Belongs to the WD repeat ESC familySimilarity : Contains 7 WD repeats
Gene Function for EED
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_152991 Applied Biosystems Silencer ® siRNAs for EED Sigma-Aldrich siRNA for EED Sigma-Aldrich shRNA for EED Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003797                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003797                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003797  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003797 UniProtKB/Swiss-Prot: EED_HUMAN, O75530 Function : Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected targetgene. The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNAmethyltransferases, thereby linking two epigenetic repression systems. Genes repressed by thePRC2/EED-EZH2 complex include HOXC8, HOXA9, MYT1 and CDKN2A Induction : Expression is induced by E2F1, E2F2 and E2F3
Genatlas biochemistry entry for EED :murine embryonic ectoderm development (eed) homolog,polycomb-group PcG, homology with Drosophilaextra sex comb,ubiquitously expressed,interacting with EZH2,HDAC proteins and involved intranscriptional repression through this interaction
3 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Eed) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for EED
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for EED 5/27 Interacting proteins for EED (ENSP00000338186 3 O75530 1 ) via UniProtKB, MINT, and/or STRING (see all 27
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0016481 negative regulation of transcription
NAS 9584199 GO:0016568 chromatin modification
IEA --
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Drugs & Compounds for EED (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for EED
Transcripts for EED(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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Millipore , and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_152991 Sigma-Aldrich siRNA for EED Sigma-Aldrich shRNA for EED Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003797 NM_152991
REFSEQ mRNAs for EED gene (2 alternative transcripts): NM_003797.2 NM_152991.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003797 NM_152991
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003797                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003797                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003797  
Additional cDNA sequence: AF070418.1 AF078933.1 AF080227.1 AF099032.1 AK292120.1 AK294133.1 AK301265.1 BC047672.2 BC068995.1 CR616231.1 CR616258.1 U90651.1
7 DOTS entries : DT.213873 DT.100751944 DT.99988495 DT.95166920 DT.120680451 DT.75121196 DT.97839611
24/123 AceView cDNA sequences (see all 123
):BE644956 AI990456 NM_003797 BI855767 AI921064 BU172591 AA635557 NM_152991 CA415589 BC068995 BG122265 BC047672 BG678915 AI630913 N50094 BM680764 AI270650 BM665282 AA384638 T26911 BM718903 BE546282 AF080227 BU608156
highest scoring ESTs for EED :AF080227 AA149581 AA228084 AA459955 AA629686 AA635557 AA834057 AA876425 AF070418 AF078933
Unigene Cluster for EED: Embryonic ectoderm development Hs.503510 [show with all ESTs ] Unigene Representative Sequence: NM_152991 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for EED (see all 6
) ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13 SP1 :                                       -     SP2 :                               -         -     SP3 :                               -             SP4 :                         -   -   -   -             SP5 :               -                            
About this scheme ECgene alternative splicing isoforms for EED 3 Ensembl transcripts including schematic representations : ENST00000263360
ENST00000351625
ENST00000327320
Expression for EED
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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EED expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for EED 1 / 2 / 3
5 probe-sets matching EED gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.503510 Expression variation in blood from EXPOLDB for EED
UniProtKB/Swiss-Prot: EED_HUMAN, O75530 Tissue specificity : Expressed in brain, colon, heart, kidney, liver, lung, muscle, ovary,peripheral blood leukocytes, pancreas, placenta, prostate, spleen, small intestine, testis, thymusand uterus. Appears to be overexpressed in breast and colon cancer
Orthologs for EED
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for EED gene from 5/13 species (see all 13
)
About this table Species with no ortholog for EED ENSEMBL Gene Tree for EED Paralogs for EED (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Pseudogenes 1 related pseudogene
SNPs/Variants for EED (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for EED (up to first 250kb)
Disorders & Mutations for EED
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 605984 1 Novoseek disease relationship for EED gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
prostate cancer
7.70
1
17134822 (1)
About this table
Medical News for EED (Possibly Related Articles in
Doctor's Guide )
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--
Publications for EED (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/55 PubMed articles for EED gene (see all 55
): The human WD repeat protein WAIT-1 specifically interacts with the cytoplasmic tails of beta7-integrins. (PubMed id 9765275) 1, 2, 3, 4 Rietzler M.... Holzmann B. (1998) The murine Polycomb-group gene eed and its human orthologue: functional implications of evolutionary conservation. (PubMed id 9806832) 1, 2, 3, 4 Schumacher A....Magnuson T. (1998) Characterization of interactions between the mammalian polycomb-group proteins Enx1/EZH2 and EED suggests the existence of different mammalian polycomb-group protein complexes. (PubMed id 9584199) 1, 3, 4 Sewalt R.G.... Otte A.P. (1998) The Polycomb group protein EZH2 directly controls DNA methylation. (PubMed id 16357870) 3, 4 Vire E....Fuks F. (2006) SUZ12 is required for both the histone methyltransferase activity and the silencing function of the EED-EZH2 complex. (PubMed id 15225548) 3, 4 Cao R. and Zhang Y. (2004) Suz12 is essential for mouse development and for EZH2 histone methyltransferase activity. (PubMed id 15385962) 3, 4 Pasini D....Helin K. (2004) Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein. (PubMed id 12435631) 3, 4 Kuzmichev A....Reinberg D. (2002) The polycomb group protein EED interacts with YY1, and both proteins induce neural tissue in Xenopus embryos. (PubMed id 11158321) 3, 4 Satijn D.P....Otte A.P. (2001) Transcriptional repression mediated by the human polycomb-group protein EED involves histone deacetylation. (PubMed id 10581039) 3, 4 van der Vlag J. and Otte A.P. (1999) HEED, the product of the human homolog of the murine eed gene, binds to the matrix protein of HIV-1. (PubMed id 9880543) 3, 4 Peytavi R.... Boulanger P. (1999)
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Genome Databases showing EED
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing EED
(According to HUGE )
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--
Specialized Databases showing EED (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for EED (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for EED:
Recombinant Proteins (EED ) Antibodies (EED )
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