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EEA1 Gene

protein-coding   GIFtS: 56

GC12M091668
early endosome antigen 1
(Previous names: early endosome antigen 1, 162kD )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
MST105 2
MSTP105 2
ZFYVE2 1, 2, 3
Descriptions
Endosome-associated protein p162 3
Zinc finger FYVE domain-containing protein 2 3
early endosome antigen 1 2
early endosome antigen 1, 162kD 1, 2
early endosome-associated protein 2
External Ids
HGNC: 31851
Entrez Gene: 84112
UniProtKB: Q150753
Ensembl: ENSG000001021897
Search outside databases for aliases for EEA1 gene

Previous GC identifers: GC12M092561 GC12M093628 GC12M093102 GC12M091671

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: EEA1_HUMAN, Q15075
Function: Binds phospholipid vesicles containing phosphatidylinositol 3-phosphate and participates
in endosomal trafficking

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the EEA1 gene  

Entrez Gene cytogenetic band: 12q22   Ensembl cytogenetic band:  12q22   HGNC cytogenetic band: 12q22

EEA1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M091668:     (about GC identifiers)

Start:
91,690,416 bp from pter
End:
91,847,238 bp from pter
Size:
156,823 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000012.10  NT_019546.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: EEA1_HUMAN, Q15075 (See protein sequence)
Recommended Name: Early endosome antigen 1  
Size: 1411 amino acids; 162466 Da
Subunit: Homodimer. Binds STX6. Binds RAB5A, RAB5B, RAB5C and RAB22A that have been activated by
GTP-binding
Subcellular location: Cytoplasm. Early endosome membrane; Peripheral membrane protein
PDB structures from and Proteopedia :
1HYI (3D)    1HYJ (3D)    1JOC (3D)    
Secondary accessions: Q14221

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_003557.2  

    ENSEMBL proteins: 
    ENSP00000317955 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Sigma-Aldrich AQUA Peptides for EEA1  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (EEA1)
    Human Recombinant Proteins from Abnova (EEA1)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    5/8 Gene Ontology (GO) cellular component terms (links to tree view) (see all 8 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622 intracellular IEA--
    GO:0005624 membrane fraction TAS7768953
    GO:0005737 cytoplasm TAS7768953
    GO:0005829 cytosol IDA7768953
    GO:0005969 serine-pyruvate aminotransferase complex IEA--
    About this table

    Antibodies for EEA1: 
    Invitrogen Antibodies for EEA1
    Millipore Mono- and Polyclonal Antibodies for the study of EEA1
    Sigma-Aldrich Antibodies for EEA1
    Browse R&D Systems for Antibodies
    Cell Signaling Technology (CST) Antibodies for EEA1 
    Antibodies from Abcam (EEA1), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (EEA1)
    Novus Biologicals Antibodies for EEA1

    Assays for EEA1: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    4 InterPro domains/families:
     IPR015880 Znf_C2H2-like
     IPR000306 Znf_FYVE
     IPR017455 Znf_FYVE-rel
     IPR007087 Znf_C2H2


       GeneDecks  EEA1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q15075

    ProtoNet protein and cluster: Q15075

    1 Blocks protein family: IPB000306 Zn-finger

    UniProtKB/Swiss-Prot: EEA1_HUMAN, Q15075
    Domain: The FYVE-type zinc finger domain mediates interactions with phosphatidylinositol
    3-phosphate
    Similarity: Contains 1 C2H2-type zinc finger
    Similarity: Contains 1 FYVE-type zinc finger

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (EEA1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (EEA1)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003566

                  Applied Biosystems Silencer® siRNAs for EEA1

                  Sigma-Aldrich siRNA for EEA1  
                         Sigma-Aldrich shRNA for EEA1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_003566
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_003566
                                     untagged cDNA clone in CMV expression vector: NM_003566 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_003566

    UniProtKB/Swiss-Prot: EEA1_HUMAN, Q15075
    Function: Binds phospholipid vesicles containing phosphatidylinositol 3-phosphate and participates
    in endosomal trafficking

    5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005516 calmodulin binding NAS11741531
    GO:0005545 phosphatidylinositol binding IDA11256955
    GO:0008270 zinc ion binding TAS11741531
    GO:0030742 GTP-dependent protein binding IDA10491193
    GO:0042803 protein homodimerization activity IDA11741531
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Millipore Pathway for EEA1
     Clathrin-dependent protein traffic

       GeneDecks  EEA1 for the pathways selected above  
    About GeneDecksing

     Gene Network CentralTM Interacting Genes and Proteins Network for  EEA1 


    5/41 Interacting proteins for EEA1 (Q150751, 2 ENSP000003179553) via UniProtKB, MINT, and/or STRING (see all 41 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RAB5BP610201, ENSP000003534443EBI-298113, EBI-399401 STRING (score=.994)
    RAB22AQ9UL261, ENSP000002440403EBI-298113, EBI-399456 STRING (score=.827)
    ZFYVE16Q7Z3T81, ENSP000003371593EBI-298113, EBI-298055 STRING (score=.749)
    RAB5AP203391, 2, ENSP000002730473EBI-298113, EBI-399437 MINT-2883035 EBI-298113, EBI-399437 MINT-2883035 STRING (score=.999)
    TOM1O607841EBI-298113, EBI-74634
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006906 vesicle fusion IMP9697774
    GO:0016189 synaptic vesicle to endosome fusion TAS11741531
    GO:0045022 early endosome to late endosome transport NAS7768953
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for EEA1
    10 Novoseek chemical compound relationships for EEA1 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    phosphatidylinositol 3-phosphate 92.12 34 11602609 (5), 12857876 (4), 11329382 (2), 16522686 (1) (see all 13)
    ptdins(3)p 84.08 21 11564757 (3), 11329382 (3), 16141328 (2), 10652369 (2) (see all 9)
    wortmannin 63.74 2 14521088 (1), 10332740 (1)
    phosphatidylinositol 58.11 10 16522686 (1), 12911814 (1), 17651088 (1), 10332740 (1) (see all 7)
    phosphoinositide 51.59 1 16141328 (1)
    mannose 6-phosphate 34.83 2 11404461 (1)
    cholesterol 12.74 2 12584196 (2)
    lipid 12.67 1 14578346 (1)
    tyrosine 11.46 2 11370743 (1), 11918675 (1)
    zinc 0.00 4 14597214 (1), 17890395 (1), 10458612 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (EEA1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (EEA1)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003566

                  Sigma-Aldrich siRNA for EEA1  
                         Sigma-Aldrich shRNA for EEA1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_003566  

    REFSEQ mRNAs for EEA1 gene: 

    NM_003566.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_003566  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_003566
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_003566
                                     untagged cDNA clone in CMV expression vector: NM_003566 

    Additional cDNA sequence: 

    AF173389.1 AK292008.1 AK307918.1 BC017837.1 BC041930.1 BX648463.1 L40157.1 X78998.1 

    5 DOTS entries:

    DT.312811  DT.100790733  DT.121114015  DT.86841244  DT.91938349 

    24/163 AceView cDNA sequences (see all 163 ):

    BF515615 BU160820 R58333 BX495378 AW954338 BU161988 BG493301 BI092315 
    H38659 BE218993 CA313002 CA435240 BF512066 AI918294 BC017837 X78998 
    BQ954298 AI815086 BU620283 AU139787 BE018194 AA278514 AA130246 CB157397 

    highest scoring ESTs for EEA1:

    L40157 AU139787 BC017837 BF574207 H99557 X78998 AA012970 AA039504 AA133971 AA258032 

    Unigene Cluster for EEA1:

    Early endosome antigen 1
    Hs.567367  [show with all ESTs]
    Unigene Representative Sequence: NM_003566


    GeneLoc Exon Structure

    1 Ensembl transcript including schematic representation:
    ENST00000322349  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    EEA1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for EEA1

    1 / 2 / 3

    8 probe-sets matching EEA1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    50373_at2, 3 U95-B 1 1.00 1.00 1.00 1.00 AI336848 0.60 1.00 0.82 1

    39627_at2, 3 U95-A 1 0.75 1.00 0.56 0.38 L40157 1.00 1.00 1.00 1

    225885_at2, 3 U133-B 1 1.00 1.00 -- -- AI336848 0.60 1.00 0.82 1

    204841_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_003566 0.60 1.00 0.82 1

    204840_s_at2, 3 U133-A 1 1.00 1.00 -- -- AI916242 0.60 1.00 0.82 1

    225885_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    204841_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    204840_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  EEA1 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TAGTTGTGCC

    SOURCE GeneReport for Unigene cluster: Hs.567367

    Expression variation in blood from EXPOLDB for EEA1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for EEA1 gene from 5/11 species (see all 11 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    EEA11   -- early endosome antigen 1 91.49(n)
    91.47(a)
    475424  XM_532649.2  XP_532649.2 
    chimpanzee
    (Pan troglodytes)
    EEA11   -- early endosome antigen 1 99.74(n)
    99.65(a)
    467212  XM_522610.2  XP_522610.2 
    cow
    (Bos taurus)
    EEA11   -- early endosome antigen 1 89.12(n)
    88.55(a)
    516259  XM_594411.3  XP_594411.3 
    rat
    (Rattus norvegicus)
    Eea11   -- early endosome antigen 1 84.91(n)
    85.53(a)
    314764  XM_235064.4  XP_235064.4 
    mouse
    (Mus musculus)
    Eea11, 5 105
    early endosome antigen 11, 5 84.53(n)1
    85.97(a)1
    2162381  NM_001001932.31  NP_001001932.11 
     AI1552855  AK0207885  (see all 16)
    About this table        Species with no ortholog for EEA1

    ENSEMBL Gene Tree for EEA1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for EEA1 gene
    PCNT2  TPR2  AKAP92  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/729 NCBI SNPs in EEA1 are shown (see all 729 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 159)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 12 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    --
    rs32036351,2
    A,C,F,H91693255(-) AAAAAT/CCTCTG 1 -- ut315Minor allele frequency- C:0.45MN EU EA WA 598
    rs107456231,2
    A,C,F,H91720553(+) GATTTG/TTTTTT 1 Q/K mis1 trp38Minor allele frequency- T:0.27EU EA WA 834
    rs107353041,2
    A,C,F,H91690669(+) CCCAAG/AAACTA 1 -- ut317Minor allele frequency- A:0.27NA EU EA WA 560
    rs123049741,2
    A,F,H91691850(+) TGTGAG/ATATTT 1 -- ut314Minor allele frequency- A:0.18EU EA WA 416
    rs46002541,2
    C,F,H91847807(+) TTCAGC/TCAAAG 1 -- ng314Minor allele frequency- T:0.04EU EA WA 418
    rs107774511,2
    C,F,H91691990(+) GTGAAC/TATCTG 1 -- ut314Minor allele frequency- T:0.01EU EA WA 410
    rs171944161,2
    C,F,H91691566(+) TAACTG/CACTGA 1 -- ut3111Minor allele frequency- C:0.18NA EU EA WA 980
    rs170207181,2
    F,H91690524(+) GTCACG/ATACTT 1 -- ut317Minor allele frequency- A:0.03NA EU EA WA 562
    rs170207201,2
    F,H91690943(+) TGGCAC/TGTTAT 1 -- ut317Minor allele frequency- T:0.03NA EU EA WA 562
    rs111066981,2
    H91692960(+) CAGATC/ATATGT 1 -- ut314Minor allele frequency- A:0.00EU EA WA 412
    About this table

    HapMap Linkage Disequilibrium images for EEA1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 605070

    UniProtKB/Swiss-Prot: EEA1_HUMAN, Q15075
  • Antibodies against EEA1 are found in sera from patients with subacute cutaneous lupus
    erythematosus and other autoimmune diseases
  • 3 Novoseek disease relationships for EEA1 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    neurological disorders 32.01 6 17113235 (1), 11122260 (1), 14962794 (1), 14728723 (1)
    wegeners granulomatosis 23.37 1 11122260 (1)
    tuberculosis 0.00 1 11581282 (1)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/121 PubMed articles for EEA1 gene (see all 121 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 8411 HGNC: 3185 AceView: EEA1 Ensembl:ENSG00000102189 euGenes: HUgn8411
    ECgene: EEA1 H-InvDB: EEA1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for EEA1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



      Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
      Invitrogen Antibodies  Invitrogen Assays
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      Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
      Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for EEA1-related products

     Millipore Custom Antibody & Bulk Services
     Millipore Preclinical / Clinical Development Services
     Millipore Immunoassay Services
     Millipore Target Screening & Profiling Services


     Predesigned and custom siRNAs for EEA1 Antibodies for EEA1
     Explore super-pooled esiRNAs Proteins for EEA1
     Lentivirus-delivered shRNAs for EEA1 Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Recombinant & Natural Proteins  

     Recombinant Proteins (EEA1)
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     Custom Service for Mouse Mab
     Custom Service for Rabbit Pab from Full-length Protein
      
     Antibodies & Assays for EEA1 

     Recombinant Proteins
    (EEA1)
     Antibodies (EEA1)
     Search OriGene for EEA1
     Search Tocris compounds for EEA1




     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for EEA1

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