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Aliases for EDRF1-AS1 Gene

Subcategory (RNA class) for EDRF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EDRF1-AS1 Gene

  • EDRF1 Antisense RNA 1 2 3 5

External Ids for EDRF1-AS1 Gene

Previous GeneCards Identifiers for EDRF1-AS1 Gene

  • GC10M127434

Summaries for EDRF1-AS1 Gene

GeneCards Summary for EDRF1-AS1 Gene

EDRF1-AS1 (EDRF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EDRF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EDRF1-AS1 Gene

Genomics for EDRF1-AS1 Gene

Regulatory Elements for EDRF1-AS1 Gene

Enhancers for EDRF1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H125146 1.8 FANTOM5 Ensembl ENCODE dbSUPER 34 +597.6 597614 16 PKNOX1 FOXA2 ATF1 SIN3A FEZF1 YY1 GLIS2 DEK ZNF202 SP3 EDRF1-AS1 EDRF1 CTBP2 MIR4296
GH10H124790 1.1 ENCODE 46.1 +960.2 960237 2 FOXA2 MLX ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF207 ZNF143 SP3 EDRF1-AS1 EDRF1 EEF1AKMT2 CTBP2 MMP21 ENSG00000258539
GH10H125892 1 ENCODE dbSUPER 40.3 -140.6 -140555 0 ZSCAN26 NFRKB DDX20 BRCA1 ZNF507 GTF3C2 FOXM1 FOXK2 TCF7L2 ZNF174 EDRF1 EDRF1-AS1 BCCIP ENSG00000234134 GC10M125891 RNU2-42P FANK1
GH10H125895 1.6 FANTOM5 ENCODE dbSUPER 20.6 -144.1 -144107 2 ATF1 ARID4B SIN3A DMAP1 YY1 ETS1 ZNF121 GLIS2 RUNX3 SP3 EDRF1 BCCIP EDRF1-AS1 CTBP2 MMP21 FANK1 RNU2-42P GC10M125891
GH10H125767 1 Ensembl ENCODE 29.9 -16.5 -16516 2 NFIB ZNF473 ZNF195 FEZF1 GLI4 ZNF776 LCORL ZNF350 EZH2 ZNF174 EDRF1 BCCIP EDRF1-AS1 ENSG00000234134 CTBP2 EEF1AKMT2 MMP21 UROS
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EDRF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for EDRF1-AS1 Gene

Chromosome:
10
Start:
125,725,634 bp from pter
End:
125,752,110 bp from pter
Size:
26,477 bases
Orientation:
Minus strand

Genomic View for EDRF1-AS1 Gene

Genes around EDRF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EDRF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EDRF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EDRF1-AS1 Gene

Proteins for EDRF1-AS1 Gene

Post-translational modifications for EDRF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EDRF1-AS1 Gene

Domains & Families for EDRF1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EDRF1-AS1 Gene

Function for EDRF1-AS1 Gene

Phenotypes From GWAS Catalog for EDRF1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EDRF1-AS1 Gene

Localization for EDRF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EDRF1-AS1 Gene

Pathways & Interactions for EDRF1-AS1 Gene

SuperPathways for EDRF1-AS1 Gene

No Data Available

Interacting Proteins for EDRF1-AS1 Gene

Gene Ontology (GO) - Biological Process for EDRF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EDRF1-AS1 Gene

Drugs & Compounds for EDRF1-AS1 Gene

No Compound Related Data Available

Transcripts for EDRF1-AS1 Gene

mRNA/cDNA for EDRF1-AS1 Gene

(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EDRF1-AS1 Gene

No ASD Table

Relevant External Links for EDRF1-AS1 Gene

GeneLoc Exon Structure for
EDRF1-AS1
ECgene alternative splicing isoforms for
EDRF1-AS1

Expression for EDRF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EDRF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EDRF1-AS1 Gene

This gene is overexpressed in Testis (x4.5).
genes like me logo Genes that share expression patterns with EDRF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EDRF1-AS1 Gene

Orthologs for EDRF1-AS1 Gene

Evolution for EDRF1-AS1 Gene

ENSEMBL:
Gene Tree for EDRF1-AS1 (if available)
TreeFam:
Gene Tree for EDRF1-AS1 (if available)

No data available for Orthologs for EDRF1-AS1 Gene

Paralogs for EDRF1-AS1 Gene

No data available for Paralogs for EDRF1-AS1 Gene

Variants for EDRF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for EDRF1-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000000908 -- 125,752,575(+) CAAAA(C/T)CAAAT intron-variant, upstream-variant-2KB
rs1000810912 -- 125,752,065(+) GTCTC(C/T)AGTGC intron-variant, upstream-variant-2KB
rs1000927464 -- 125,745,583(+) TGACT(A/G)CAGGT intron-variant, nc-transcript-variant
rs1001304786 -- 125,747,183(+) GTTTT(-/TAATC)TAATT intron-variant
rs1001362278 -- 125,744,598(+) GGGGC(A/G)GTCAG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for EDRF1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1140117 CNV insertion 24896259
nsv832017 CNV loss 17160897

Relevant External Links for EDRF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EDRF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EDRF1-AS1 Gene

Disorders for EDRF1-AS1 Gene

Relevant External Links for EDRF1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EDRF1-AS1

No disorders were found for EDRF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EDRF1-AS1 Gene

Publications for EDRF1-AS1 Gene

No publications were found for EDRF1-AS1 Gene.

Products for EDRF1-AS1 Gene

Sources for EDRF1-AS1 Gene

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