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Aliases for EDNRB-AS1 Gene

Subcategory (RNA class) for EDNRB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EDNRB-AS1 Gene

  • EDNRB Antisense RNA 1 2 3 5

External Ids for EDNRB-AS1 Gene

Previous GeneCards Identifiers for EDNRB-AS1 Gene

  • GC13P078394

Summaries for EDNRB-AS1 Gene

GeneCards Summary for EDNRB-AS1 Gene

EDNRB-AS1 (EDNRB Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EDNRB-AS1 Gene

Genomics for EDNRB-AS1 Gene

Regulatory Elements for EDNRB-AS1 Gene

Enhancers for EDNRB-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G077831 1.3 VISTA Ensembl ENCODE 0.4 +14.1 14139 2.2 ZNF263 RAD51 BHLHE40 MAX EDNRB EDNRB-AS1 GC13M077918 GC13M077919
GH13G077836 1 FANTOM5 Ensembl ENCODE 0.4 +17.6 17601 1.1 TRIM28 EDNRB EDNRB-AS1 GC13M077919 GC13M077918
GH13G077859 1.1 FANTOM5 Ensembl ENCODE 0.3 +41.3 41315 2.3 LEF1 JUND JUN FOXP2 FOS MAFK EDNRB LINC01069 EDNRB-AS1 GC13M077918 GC13M077919
GH13G077779 0.9 Ensembl ENCODE 0.3 -38.9 -38923 0.9 CTCF ZNF654 PKNOX1 JUN TRIM22 CHD7 RAD21 GATA2 SMC3 FOS EDNRB EDNRB-AS1 GC13M077708
GH13G077896 1.1 Ensembl ENCODE 0.2 +78.7 78743 3.2 PKNOX1 JUN BACH1 BMI1 EBF1 ZBTB40 ARID3A CBX5 EED FOS EDNRB GC13M077918 GC13M077919 EDNRB-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EDNRB-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for EDNRB-AS1 Gene

Chromosome:
13
Start:
77,818,937 bp from pter
End:
77,908,442 bp from pter
Size:
89,506 bases
Orientation:
Plus strand

Genomic View for EDNRB-AS1 Gene

Genes around EDNRB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EDNRB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EDNRB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EDNRB-AS1 Gene

Proteins for EDNRB-AS1 Gene

Post-translational modifications for EDNRB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EDNRB-AS1 Gene

Domains & Families for EDNRB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EDNRB-AS1 Gene

Function for EDNRB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EDNRB-AS1 Gene

Localization for EDNRB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EDNRB-AS1 Gene

Pathways & Interactions for EDNRB-AS1 Gene

SuperPathways for EDNRB-AS1 Gene

No Data Available

Interacting Proteins for EDNRB-AS1 Gene

Gene Ontology (GO) - Biological Process for EDNRB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EDNRB-AS1 Gene

Drugs & Compounds for EDNRB-AS1 Gene

No Compound Related Data Available

Transcripts for EDNRB-AS1 Gene

mRNA/cDNA for EDNRB-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EDNRB-AS1 Gene

No ASD Table

Relevant External Links for EDNRB-AS1 Gene

GeneLoc Exon Structure for
EDNRB-AS1
ECgene alternative splicing isoforms for
EDNRB-AS1

Expression for EDNRB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EDNRB-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EDNRB-AS1 Gene

This gene is overexpressed in Testis (x21.5).
genes like me logo Genes that share expression patterns with EDNRB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EDNRB-AS1 Gene

Orthologs for EDNRB-AS1 Gene

Evolution for EDNRB-AS1 Gene

ENSEMBL:
Gene Tree for EDNRB-AS1 (if available)
TreeFam:
Gene Tree for EDNRB-AS1 (if available)

No data available for Orthologs for EDNRB-AS1 Gene

Paralogs for EDNRB-AS1 Gene

No data available for Paralogs for EDNRB-AS1 Gene

Variants for EDNRB-AS1 Gene

Sequence variations from dbSNP and Humsavar for EDNRB-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs104894387 Pathogenic 77,901,181(-) TGGTG(G/T)CTATT intron-variant, reference, missense
rs104894388 Pathogenic 77,903,543(-) GAAAG(C/G)CTCCG intron-variant, reference, missense
rs104894390 Pathogenic 77,903,200(-) ATCTG(A/C/T)GAATC intron-variant, reference, synonymous-codon, stop-gained
rs104894391 Pathogenic 77,903,356(-) GATAT(C/T)GAGCT intron-variant, reference, stop-gained
rs876657688 Pathogenic 77,903,339(-) TCTTG(A/G)AGTAG intron-variant, reference, stop-gained

Structural Variations from Database of Genomic Variants (DGV) for EDNRB-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv364e199 CNV deletion 23128226
esv2446245 CNV deletion 19546169
esv24551 CNV loss 19812545
esv2661868 CNV deletion 23128226
esv2747694 CNV deletion 23290073
esv3632784 CNV loss 21293372

Relevant External Links for EDNRB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EDNRB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EDNRB-AS1 Gene

Disorders for EDNRB-AS1 Gene

Relevant External Links for EDNRB-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EDNRB-AS1

No disorders were found for EDNRB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EDNRB-AS1 Gene

Publications for EDNRB-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for EDNRB-AS1 Gene

Sources for EDNRB-AS1 Gene

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