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Aliases & Descriptions for EDNRB
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ABCDS 2 , 5 ET-B 3 ETB 1 , 2 ETBR 2 ETRB 2 , 3 HSCR 2 HSCR2 2 , 5 OTTHUMP00000178736 2
Descriptions Endothelin receptor non-selective type 2 , 3 endothelin receptor type B 2
Search outside databases for aliases for EDNRB genePrevious GC identifers: GC13M076437 GC13M072464 GC13M077406 GC13M076267
Summaries for EDNRB (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for EDNRB : The protein encoded by this gene is a G protein-coupled receptor which activates aphosphatidylinositol-calcium second messenger system. Its ligand, endothelin, consists of a familyof three potent vasoactive peptides: ET1, ET2, and ET3. Studies suggest that the multigenicdisorder, Hirschsprung disease type 2, is due to mutations in the endothelin receptor type B gene.Three transcript variants encoding two different isoforms have been found for this gene. Whileboth isoforms bind ET1, they exhibit different responses upon binding, suggesting that they may befunctionally distinct. [provided by RefSeq] UniProtKB/Swiss-Prot: EDNRB_HUMAN, P24530 Function : Non-specific receptor for endothelin 1, 2, and 3. Mediates its action by association withG proteins that activate a phosphatidylinositol-calcium second messenger system
Gene Wiki entry for EDNRB (Endothelin_receptor_type_B)
Genomic Location for EDNRB
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the EDNRB gene Entrez Gene cytogenetic band: 13q22 Ensembl cytogenetic band: 13q22.3 HGNC cytogenetic band: 13q22 EDNRB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure
GeneLoc location for GC13M077367:
(about GC identifiers )
Start:
77,367,617 bp from pter
End:
77,447,665 bp from pter
Size:
80,049 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000013.9 NT_024524.13 Proteins for EDNRB
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: EDNRB_HUMAN, P24530 (See
protein sequence )Recommended Name: Endothelin B receptor precursor Size : 442 amino acids; 49644 Da
Subcellular location : Cell membrane; Multi-pass membrane protein
Secondary accessions : A2A2Z8 A8K3T4 O15343 Q59GB1 Q5W0G9 Q8NHM6 Q8NHM7 Q8NHM8 Q8NHM9 Q9UD23 Q9UQK3Alternative splicing : 3 isoforms : P24530-1 P24530-2 P24530-3
Post-translational modifications:
Palmitoylation of Cys-402 was confirmed by the palmitoylation of Cys-402 in a deletion mutantlacking both Cys-403 and Cys-4051
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_000106.1 NP_001116131.1 NP_003982.1 ENSEMBL proteins: ENSP00000335311 ENSP00000366416 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for EDNRB: Assays for EDNRB:
Protein
Domains/ Families for EDNRB(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P24530 ProtoNet protein and cluster: P24530
2 Blocks protein families : IPB000499 Endothelin receptor signature IPB001112 Endothelin-B receptor signature UniProtKB/Swiss-Prot: EDNRB_HUMAN, P24530 Similarity : Belongs to the G-protein coupled receptor 1 family
Gene Function for EDNRB
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_003991 Applied Biosystems Silencer ® siRNAs for EDNRB Sigma-Aldrich siRNA and siRNA Panels for EDNRB Sigma-Aldrich shRNA Panels and shRNA for EDNRB Explore Sigma-Aldrich super-pooled esiRNAs Clones: Invitrogen Clones for EDNRB Millipore Clones for the Expression of EDNRB
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000115                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000115                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_000115  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001122659 UniProtKB/Swiss-Prot: EDNRB_HUMAN, P24530 Function : Non-specific receptor for endothelin 1, 2, and 3. Mediates its action by association withG proteins that activate a phosphatidylinositol-calcium second messenger system
Genatlas biochemistry entry for EDNRB :endothelin receptor B,G protein coupled receptor superfamily,homologous to murine piebald lethal
15/23 MGI mutant phenotypes (inferred from 38 alleles ) (MGI details for Ednrb) (see all 23
):4 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0001600 endothelin-B receptor activity
IEA -- GO:0004872 receptor activity
IEA -- GO:0004930 G-protein coupled receptor activity
IEA -- GO:0005515 protein binding
IEA --
About this table
Pathways & Interactions for EDNRB
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for EDNRB (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for EDNRB 5/58 Interacting proteins for EDNRB (ENSP00000366416 3 ) via UniProtKB, MINT, and/or STRING (see all 58
)About this table 5/13 Gene Ontology (GO) biological process terms (links to tree view) (see all 13
):
GO ID Qualified GO term Evidence PubMed IDs GO:0001755 neural crest cell migration
IEA -- GO:0006885 regulation of pH
IEA -- GO:0007194 negative regulation of adenylate cyclase activity
TAS 9556633 GO:0007200 activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger
TAS 9556633 GO:0007422 peripheral nervous system development
IEA --
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Drugs & Compounds for EDNRB (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Sigma-Aldrich Small Molecules for EDNRB:Antagonist
Compounds for EDNRB available from Tocris Bioscience About this table 10/26 Novoseek chemical compound relationships for EDNRB gene (see all 26
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
sarafotoxin
90.02
39
8336519 (3), 9240323 (2), 8751073 (1), 9146666 (1) (see all 27 )
bq 3020
83.32
9
7891013 (2), 7647976 (2), 8355464 (2), 7679333 (1)
irl 1620
81.71
5
10705994 (1), 15280069 (1), 8650075 (1), 8664342 (1)
fr139317
77.59
4
7891013 (1), 8124808 (1), 7965709 (1)
pd 142893
75.10
1
12147606 (1)
bq610
73.34
5
17433294 (2), 10445306 (1), 12147606 (1), 11034585 (1)
ambrisentan
68.06
1
16741057 (1)
sitaxsentan
66.08
3
17314684 (1), 14630619 (1), 16292989 (1)
lu135252
63.45
2
11078390 (1), 14718401 (1)
pd 145065
57.52
1
11212215 (1)
About this table
Transcripts for EDNRB(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_003991 Sigma-Aldrich siRNA and siRNA Panels for EDNRB Sigma-Aldrich shRNA Panels and shRNA for EDNRB Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000115 NM_001122659 NM_003991
REFSEQ mRNAs for EDNRB gene (3 alternative transcripts): NM_000115.2 NM_001122659.1 NM_003991.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000115 NM_001122659 NM_003991
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000115                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000115                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_000115  
Additional cDNA sequence: AB209198.1 AF114163.1 AF114164.1 AF114165.1 AK290699.1 AY275463.1 BC014472.1 CR605578.1 CR608540.1 CR611011.1 CR613068.1 CR623558.1 D90402.1 L06623.1 M74921.1 S44866.1 S57283.1 X99250.1
12 DOTS entries : DT.100793248 DT.443502 DT.101975883 DT.120795950 DT.95278688 DT.100793249 DT.75164588 DT.97817518 DT.100709927 DT.117753 DT.95278691 DT.95278689
24/221 AceView cDNA sequences (see all 221
):BQ229233 AU136164 CR608540 AA573116 BU727655 BI520340 AF308156 CA771312 AY275463 CR613068 CK906282 CA397473 AU139933 CR611011 BI492017 BM804821 N20208 CR623558 AA814635 BQ212073 AL709106 N24818 AF114164 AF114163
highest scoring ESTs for EDNRB :AF114165 BM918983 BU952237 CA772539 CB997737 CB997817 D90402 S57283 AA000986 AA019120
Unigene Cluster for EDNRB: Endothelin receptor type B Hs.82002 [show with all ESTs ] Unigene Representative Sequence: NM_001122659 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000334286
ENST00000377211
Expression for EDNRB
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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EDNRB expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for EDNRB 1 / 2 / 3
7 probe-sets matching EDNRB gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGTATGCTGTSOURCE GeneReport for Unigene cluster: Hs.82002 Expression variation in blood from EXPOLDB for EDNRB
UniProtKB/Swiss-Prot: EDNRB_HUMAN, P24530 Tissue specificity : Expressed in placental stem villi vessels, but not in cultured placental villismooth muscle cells
Orthologs for EDNRB
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for EDNRB gene from 5/7 species (see all 7
)
About this table Species with no ortholog for EDNRB ENSEMBL Gene Tree for EDNRB Paralogs for EDNRB (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for EDNRB gene EDNRA 2
SNPs/Variants for EDNRB (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for EDNRB (up to first 250kb)
Disorders & Mutations for EDNRB
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 131244 disorders : 600155 600501 277580 UniProtKB/Swiss-Prot: EDNRB_HUMAN, P24530
Defects in EDNRB are a cause of Waardenburg syndrome type IV (WS4) [MIM:277580]; alsoknown as Waardenburg-Shah syndrome. WS4 is characterized by the association of Waardenburgfeatures (depigmentation and deafness) and the absence of enteric ganglia in the distal part ofthe intestine (Hirschsprung disease) Defects in EDNRB are the cause of Hirschsprung disease type 2 (HSCR2) [MIM:600155]; alsoknown as aganglionic megacolon (MGC). It is a congenital disorder characterized by absence ofenteric ganglia along a variable length of the intestine. It is the most common cause ofcongenital intestinal obstruction. Early symptoms range from complete acute neonatal obstruction,characterized by vomiting, abdominal distention and failure to pass stool, to chronic constipationin the older child Defects in EDNRB are the cause of ABCD syndrome (ABCDS) [MIM:600501]. ABCD syndrome is anautosomal recessive syndrome characterized by albinism, black lock at temporal occipital region,bilateral deafness, aganglionosis of the large intestine and total absence of neurocytes and nervefibers in the small intestine
10/65 Novoseek disease relationships for EDNRB gene (see all 65
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
hirschsprung disease
89.76
106
15294878 (4), 12080062 (3), 10792313 (3), 14669347 (3) (see all 49 )
shah-waardenburg syndrome
89.22
8
8630502 (1), 11484199 (1), 16237557 (1), 9279758 (1) (see all 6 )
waardenburgs syndrome
85.20
4
11484199 (1), 9035423 (1), 9035203 (1)
staphylococcal scalded skin syndrome
75.51
3
10447140 (1), 15815014 (1), 1703553 (1)
hirschsprung disease 2
72.15
2
11484199 (1), 8001158 (1)
bullous impetigo
70.11
4
9431380 (2), 15815014 (2)
colonic aganglionosis
68.27
4
8630503 (1), 9895385 (1), 10792313 (1)
acute poststreptococcal glomerulonephritis
63.54
3
11231350 (1), 16534181 (1), 19184118 (1)
hypertension pulmonary
52.04
2
18567602 (1), 11000137 (1)
hypertension arterial
35.81
3
15927975 (1), 14630619 (1), 16292989 (1)
About this table GeneTests: EDNRB Hirschsprung Disease Human Gene Mutation Database : EDNRB Genetic Association Database: EDNRB Human Genome Epidemiology Navigator: EDNRB (19 documents)
Medical News for EDNRB (Possibly Related Articles in
Doctor's Guide )
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--
Publications for EDNRB (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/484 PubMed articles for EDNRB gene (see all 484
): Significance of novel endothelin-B receptor gene polymorphisms in Hirschsprung's disease: predominance of a novel variant (561C/T) in patients with co-existing Down's syndrome. (PubMed id 12628594) 1, 3, 4, 6 Zaahl M.G....Moore S.W. (2003) Association between endothelin receptor B nonsynonymous variants and melanoma risk. (PubMed id 16145050) 1, 3, 6 Soufir N....Grandchamp B. (2005) Heterozygous endothelin receptor B (EDNRB) mutations in isolated Hirschsprung disease. (PubMed id 8852660) 1, 3, 4 Amiel J....Lyonnet S. (1996) Endothelin-B receptor mutations in patients with isolated Hirschsprung disease from a non-inbred population. (PubMed id 8852659) 1, 3, 4 Auricchio A.... Ballabio A. (1996) ABCD syndrome is caused by a homozygous mutation in the EDNRB gene. (PubMed id 11891690) 1, 3, 4 Verheij J.B.... Hofstra R.M. (2002) Association between glaucoma and gene polymorphism of endothelin type A receptor. (PubMed id 15988412) 1, 3, 6 Ishikawa K....Mashima Y. (2005) SOX10 mutations in chronic intestinal pseudo-obstruction suggest a complex physiopathological mechanism. (PubMed id 12189494) 1, 3, 4 Pingault V.... Goossens M. (2002) Phenotypic variation in a family with mutations in two Hirschsprung- related genes (RET and endothelin receptor B). (PubMed id 9760196) 1, 3, 4 Svensson P.J.... Nordenskjold A. (1998) Functional characterization of three mutations of the endothelin B receptor gene in patients with Hirschsprung's disease: evidence for selective loss of Gi coupling. (PubMed id 11471546) 1, 3, 4 Fuchs S.... Pinet F. (2001) Novel endothelin B receptor transcripts with the potential of generating a new receptor. (PubMed id 10072757) 1, 3, 4 Tsutsumi M.... Jones P.A. (1999)
Search for EDNRB
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Genome Databases showing EDNRB
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing EDNRB
(According to HUGE )
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Specialized Databases showing EDNRB (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
GeneReviews http://www.genetests.org/query?gene=EDNRB NIEHS-SNPs http://egp.gs.washington.edu/data/ednrb/
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-- Services for EDNRB (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for EDNRB:
Tocris compounds for EDNRB
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009