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Aliases & Descriptions for EDNRA
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ET-A 3 | | ETA 2, 3 | | ETA-R 3 | | ETRA 2, 3 | | hET-AR 3 |
| | | Descriptions |
|---|
| Endothelin A receptor 3 | | G protein-coupled receptor 2 | | endothelin receptor type A 2 |
|
| | Search outside databases for aliases for EDNRA genePrevious GC identifers: GC04P149211 GC04P148777 GC04P148979 GC04P148759 |
Summaries for EDNRA(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: EDNRA_HUMAN, P25101Function: Receptor for endothelin-1. Mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of binding affinities for ET-A is: ET1 > ET2 >> ET3Gene Wiki entry for EDNRA (Endothelin_receptor_type_A) |
Genomic Location for EDNRA
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the EDNRA gene 
Entrez Gene cytogenetic band: 4q31.23 Ensembl cytogenetic band: 4q31.23 HGNC chromosome: 4EDNRA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04P148621:
(about GC identifiers)
Start:
|
148,621,575 bp from pter |
End:
|
148,685,555 bp from pter |
Size:
|
63,981 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000004.10 NT_016354.18
| Proteins for EDNRA
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: EDNRA_HUMAN, P25101 (See
protein sequence)Recommended Name: Endothelin-1 receptor precursor Size: 427 amino acids; 48722 Da
Subunit: Interacts with HDAC7 and HTATIP
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: O43441 Q16432 Q16433 Q8TBH2Alternative splicing: 4 isoforms: P25101-1 P25101-2 P25101-3 P25101-4 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001948.1
ENSEMBL proteins: ENSP00000377611 ENSP00000341556 ENSP00000315011 ENSP00000351359
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for EDNRA: Assays for EDNRA: | Protein
Domains/ Families for EDNRA(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P25101
ProtoNet protein and cluster: P25101 2 Blocks protein families: IPB000499 Endothelin receptor signature IPB002175 Endothelin-A receptor signature
UniProtKB/Swiss-Prot: EDNRA_HUMAN, P25101Similarity: Belongs to the G-protein coupled receptor 1 family | Gene Function for EDNRA
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001957
Applied Biosystems Silencer® siRNAs for EDNRA
Sigma-Aldrich siRNA and siRNA Panels for EDNRA  Sigma-Aldrich shRNA Panels and shRNA for EDNRA  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001957                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001957                                  untagged cDNA clone in CMV expression vector: NM_001957 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001957
UniProtKB/Swiss-Prot: EDNRA_HUMAN, P25101Function: Receptor for endothelin-1. Mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of binding affinities for ET-A is: ET1 > ET2 >> ET3Genatlas biochemistry entry for EDNRA:endothelin receptor A,with higher affinity to EDN1,G protein coupled receptor superfamily15/16 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Ednra) (see all 16
):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for EDNRA
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Sigma-Aldrich "Your Favorite Gene" Pathways for EDNRA (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for EDNRA 
5/49 Interacting proteins for EDNRA (ENSP000003150113) via UniProtKB, MINT, and/or STRING (see all 49
)About this table
5/11 Gene Ontology (GO) biological process terms (links to tree view) (see all 11
): About this table
|
Drugs & Compounds for EDNRA(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  | Sigma-Aldrich Small Molecules for EDNRA: Antagonist |
Compounds for EDNRA available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| Sulfisoxazole | Endothelin ETA antagonist | [127-69-5] | | BMS 182874 hydrochloride | Highly selective, orally active non-peptide ETA antagonist | [153042-42-3] | | CI 1020 | Highly selective, orally active ETA antagonist | [162256-50-0] | | FR 139317 | Highly potent, selective ETA antagonist | [142375-60-8] | About this table
10/56 Novoseek chemical compound relationships for EDNRA gene (see all 56
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| sitaxsentan |
90.79 |
30 |
17163810 (2), 16932638 (1), 17314684 (1), 15500395 (1) (see all 23) |
| sarafotoxin |
90.69 |
29 |
8336519 (3), 8587426 (2), 7965709 (2), 8074203 (1) (see all 21) |
| bq 3020 |
87.82 |
13 |
8355464 (3), 7891013 (2), 7679333 (2), 8121179 (1) (see all 6) |
| fr139317 |
85.48 |
14 |
7891013 (2), 7965709 (2), 14996949 (2), 11078425 (1) (see all 11) |
| ambrisentan |
83.49 |
7 |
16741057 (2), 18506008 (1), 18238950 (1), 19198697 (1) (see all 5) |
| lu135252 |
78.98 |
6 |
16439456 (1), 18616421 (1), 15915003 (1), 12472954 (1) (see all 5) |
| irl 1620 |
76.67 |
2 |
10705994 (1), 8650075 (1) |
| bq610 |
75.81 |
8 |
12147606 (2), 17433294 (2), 7796447 (1), 11034585 (1) (see all 5) |
| pd 142893 |
75.52 |
3 |
7965794 (1), 12147606 (1) |
| sitaxsentan sodium |
72.82 |
4 |
15486408 (2), 15838366 (1) |
About this table
|
Transcripts for EDNRA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001957
Sigma-Aldrich siRNA and siRNA Panels for EDNRA  Sigma-Aldrich shRNA Panels and shRNA for EDNRA  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001957 REFSEQ mRNAs for EDNRA gene: NM_001957.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001957               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001957                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001957                                  untagged cDNA clone in CMV expression vector: NM_001957  Additional cDNA sequence: AF014826.1 AK304451.1 AK312812.1 AK315931.1 AY275462.1 BC022511.1 D90348.1 L06622.1 S45956.1 S57498.1 S63938.1 S67127.1 S81539.1 S81542.1 S81545.1 X61950.1 6 DOTS entries: DT.446880 DT.121274733 DT.95264375 DT.100682905 DT.91762983 DT.95264377 24/142 AceView cDNA sequences (see all 142
):AU117099 BQ008268 BQ575745 CB045526 CD723797 BX109539 BM548868 N57394 D57899 BU687640 AW293402 BQ018994 BU948045 AY275462 BM512298 AL692187 AA043717 BQ005145 BQ006584 AF014826 AU120519 BP380731 AA452627 S81539
highest scoring ESTs for EDNRA:AA011082 AA011083 AA043717 AA043718 AA058926 AA101845 AA101846 AA131759 AA131863 AA233928 Unigene Cluster for EDNRA: Endothelin receptor type A Hs.183713 [show with all ESTs]Unigene Representative Sequence: NM_001957
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for EDNRA (see all 7
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | · | 2c | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for EDNRA
4 Ensembl transcripts including schematic representations: ENST00000394047
ENST00000339690
ENST00000324300
ENST00000358556
|
Expression for EDNRA
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| EDNRA expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for EDNRA
1 / 2 / 3 7 probe-sets matching EDNRA gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.183713
Expression variation in blood from EXPOLDB for EDNRA UniProtKB/Swiss-Prot: EDNRA_HUMAN, P25101Tissue specificity: Isoform 1, isoform 3 and isoform 4 are expressed in a variety of tissues, with highest levels in the aorta and cerebellum, followed by lung, atrium and cerebral cortex, lower levels in the placenta, kidney, adrenal gland, duodenum, colon, ventricle and liver but no expression in umbilical vein endothelial cells. Within the placenta, isoform 1, isoform 2, isoform 3 and isoform 4 are expressed in the villi and stem villi vessels |
Orthologs for EDNRA
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for EDNRA gene from 5/9 species (see all 9
)
About this table Species with no ortholog for EDNRA
ENSEMBL Gene Tree for EDNRA | Paralogs for EDNRA(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for EDNRA gene
- EDNRB2
|
SNPs/Variants for EDNRA(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for EDNRA (up to first 250kb)
|
Disorders & Mutations for EDNRA
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 131243 disorders: 157300 10/96 Novoseek disease relationships for EDNRA gene (see all 96
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| staphylococcal scalded skin syndrome |
80.35 |
7 |
10447140 (2), 11118740 (1), 10789506 (1), 9048539 (1) (see all 6) |
| staphylococcal scarlet fever |
67.23 |
1 |
9431380 (1) |
| hypertension arterial |
64.26 |
23 |
15486408 (2), 18506008 (1), 16932638 (1), 12975426 (1) (see all 18) |
| hypertension pulmonary |
62.28 |
14 |
7705179 (3), 9918974 (2), 11480254 (2), 11078412 (1) (see all 9) |
| bullous impetigo |
61.10 |
2 |
9431380 (2) |
| ovarian carcinoma metastatic |
58.72 |
2 |
17587812 (1), 16741062 (1) |
| heart failure |
51.15 |
24 |
10869543 (3), 15958361 (2), 10600660 (2), 15642529 (2) (see all 16) |
| vasospasm |
49.93 |
3 |
8784140 (1), 17933488 (1), 17437213 (1) |
| ovarian carcinoma |
49.73 |
58 |
16741063 (4), 15269139 (4), 12193113 (3), 9973223 (3) (see all 23) |
| cerebral vasospasm |
48.04 |
1 |
16121967 (1) |
About this table
Human Gene Mutation Database: EDNRA Genetic Association Database: EDNRA Human Genome Epidemiology Navigator: EDNRA (26 documents)
|
Medical News for EDNRA(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for EDNRA (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/602 PubMed articles for EDNRA gene (see all 602
):- Cloning and chromosomal localization of a human endothelin ETA receptor. (PubMed id 1659806)2, 3, 4 Cyr C.... Kris R. (1991)
- Alternative RNA splicing of the human endothelin-A receptor generates multiple transcripts. (PubMed id 8611157)1, 3, 4 Miyamoto Y....Nakao K. (1996)
- Cloning and characterization of cDNA encoding human A-type endothelin receptor. (PubMed id 1719979)1, 3, 4 Adachi M.... Miyamoto C. (1991)
- Association of EDNRA, but not WNK4 or FKBP1B, polymorphisms with essential hypertension. (PubMed id 14616768)1, 3, 6 Benjafield A.V....Morris B.J. (2003)
- Molecular characterization and regulation of the human endothelin receptors. (PubMed id 8440682)1, 3, 4 Elshourbagy N.A.... Nambi P. (1993)
- Endothelin-1 and ETA receptor expression in vascular smooth muscle cells from human placenta: a new ETA receptor messenger ribonucleic acid is generated by alternative splicing of exon 3. (PubMed id 9284755)1, 3, 4 Bourgeois C.... Ferre F. (1997)
- Association between glaucoma and gene polymorphism of endothelin type A receptor. (PubMed id 15988412)1, 3, 6 Ishikawa K....Mashima Y. (2005)
- A polymorphism in the endothelin-A receptor gene is linked to baroreflex sensitivity. (PubMed id 16208144)3, 6 Ormezzano O....Baguet J.P. (2005)
- Polymorphisms in genes of the endothelin system and cerebral small-vessel disease. (PubMed id 16002759)3, 6 Gormley K....Markus H.S. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
|
Search for EDNRA
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing EDNRA
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing EDNRA
(According to HUGE)
About This Section
| -- |
Specialized Databases showing EDNRA(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| NIEHS-SNPs | http://egp.gs.washington.edu/data/ednra/ |
|
| | | About This Section
| --
| Services for EDNRA(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for EDNRA:

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 |  |  |
| | | | Tocris compounds for EDNRA |
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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