 |
 | Services
| |
 |
Aliases & Descriptions for EDN2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ET-2 3 | | ET2 1, 2 | | OTTHUMP00000007075 2 | | PPET2 2, 3 | | Preproendothelin-2 3 |
| | | Descriptions |
|---|
| endothelin 2 2 | | preproendothelin 2 2 |
|
| | Search outside databases for aliases for EDN2 genePrevious GC identifers: GC01M041972 GC01M040948 GC01M041407 GC01M041357 GC01M041613 |
Summaries for EDN2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for EDN2: This gene encodes a member of the endothelin protein family of secretory vasoconstrictive peptides. The preproprotein is processed to a short mature form which functions as a ligand for the endothelin receptors that initiate intracellular signaling events. This gene product is involved in a wide range of biological processes, such as hypertension and ovulation. [provided by RefSeq] UniProtKB/Swiss-Prot: EDN2_HUMAN, P20800Function: Endothelins are endothelium-derived vasoconstrictor peptides |
Genomic Location for EDN2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the EDN2 gene 
Entrez Gene cytogenetic band: 1p34 Ensembl cytogenetic band: 1p34.2 HGNC cytogenetic band: 1p34EDN2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M041717:
(about GC identifiers)
Start:
|
41,717,033 bp from pter |
End:
|
41,722,884 bp from pter |
Size:
|
5,852 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000001.9 NT_032977.8
| Proteins for EDN2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: EDN2_HUMAN, P20800 (See
protein sequence)Recommended Name: Endothelin-2 precursor Size: 178 amino acids; 19960 Da
Subcellular location: SecretedREFSEQ proteins: NP_001947.1
ENSEMBL proteins: ENSP00000361668
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for EDN2: Assays for EDN2: | Protein
Domains/ Families for EDN2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P20800
ProtoNet protein and cluster: P20800 2 Blocks protein families: IPB003641 Endothelin IPB003642 Sarafotoxin/bibrotoxin
UniProtKB/Swiss-Prot: EDN2_HUMAN, P20800Similarity: Belongs to the endothelin/sarafotoxin family | Gene Function for EDN2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001956
Applied Biosystems Silencer® siRNAs for EDN2
Sigma-Aldrich siRNA for EDN2  Sigma-Aldrich shRNA for EDN2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001956                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001956                                  untagged cDNA clone in CMV expression vector: NM_001956 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001956
UniProtKB/Swiss-Prot: EDN2_HUMAN, P20800Function: Endothelins are endothelium-derived vasoconstrictor peptidesGenatlas biochemistry entry for EDN2:endothelin 2 (vaso-constrictor/pressor peptide),involved in vascular remodeling,commonly expressed in right atrial tissue,susceptibility gene for essential hypertension2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for EDN2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/14 Interacting proteins for EDN2 (ENSP000003616683) via UniProtKB, MINT, and/or STRING (see all 14
)About this table
5/17 Gene Ontology (GO) biological process terms (links to tree view) (see all 17
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0002690 | positive regulation of leukocyte chemotaxis |
IDA | 9696419 | | GO:0003058 | hormonal regulation of the force of heart contraction |
TAS | 1652300 | | GO:0003099 | positive regulation of the force of heart contraction by chemical signal |
TAS | 1652300 | | GO:0003100 | regulation of systemic arterial blood pressure by endothelin |
IDA | 2649896 | | GO:0007204 | elevation of cytosolic calcium ion concentration |
IDA | 1917960 | About this table
|
Drugs & Compounds for EDN2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Compounds for EDN2 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| BMS 182874 hydrochloride | Highly selective, orally active non-peptide ETA antagonist | [153042-42-3] | | BQ 788 sodium salt | Selective ETB antagonist | [156161-89-6] | | IRL-1620 | Highly selective ETB agonist | [142569-99-1] | | FR 139317 | Highly potent, selective ETA antagonist | [142375-60-8] | | BQ-123 | Selective ETA antagonist | [136553-81-6] | About this table
10/22 Novoseek chemical compound relationships for EDN2 gene (see all 22
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| sarafotoxin |
91.82 |
48 |
2282471 (3), 1725315 (2), 10455253 (2), 9124371 (2) (see all 32) |
| fr139317 |
80.89 |
2 |
9831924 (1) |
| irl 1620 |
61.09 |
1 |
8650075 (1) |
| inositol triphosphate |
33.92 |
1 |
8447814 (1) |
| calcium |
30.96 |
33 |
8717152 (4), 1407005 (2), 1332876 (2), 8380432 (2) (see all 14) |
| inositol 1,4,5 trisphosphate |
26.46 |
1 |
1917960 (1) |
| 125i |
21.27 |
3 |
1843209 (2) |
| forskolin |
19.69 |
12 |
9595397 (4), 10750028 (2), 1652300 (1), 7720804 (1) |
| nitric oxide |
19.18 |
6 |
15691296 (3), 18838093 (1), 8401924 (1) |
| cyclic amp |
16.93 |
1 |
8294922 (1) |
About this table
|
Transcripts for EDN2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001956
Sigma-Aldrich siRNA for EDN2  Sigma-Aldrich shRNA for EDN2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001956 REFSEQ mRNAs for EDN2 gene: NM_001956.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001956               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001956                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001956                                  untagged cDNA clone in CMV expression vector: NM_001956  Additional cDNA sequence: BC034393.1 M65199.1 S63833.1 S63834.1 S63835.1 S63836.1 S63837.1 S63838.1 X55177.1 1 DOTS entry: DT.207009 21 AceView cDNA sequences:BC034393 AW276532 BX119098 S63835 S63837 S63516 S63836 AI628621 NM_001956 AW452560 S63838 M65199 BI761655 S63833 BI760483 S63834 BI769422 BV199041 X55177 AI140863 AA570005
highest scoring ESTs for EDN2:M65199 BC034393 BI760483 X55177 AA570005 AI140863 AI628621 AW276532 AW452560 BI761655 Unigene Cluster for EDN2: Endothelin 2 Hs.1407 [show with all ESTs]Unigene Representative Sequence: BC034393
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for EDN2 (see all 7
)
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | · | 8c | |
| SP1: | |   | - |   | |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for EDN2
1 Ensembl transcript including schematic representation: ENST00000372587
|
Expression for EDN2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| EDN2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for EDN2
1 / 2 / 3 3 probe-sets matching EDN2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CCTCAGCCAG
SOURCE GeneReport for Unigene cluster: Hs.1407
Expression variation in blood from EXPOLDB for EDN2 UniProtKB/Swiss-Prot: EDN2_HUMAN, P20800Tissue specificity: Expressed in lung, but not in placental stem villi vessels or cultured placental villi smooth muscle cells |
Orthologs for EDN2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for EDN2 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for EDN2
ENSEMBL Gene Tree for EDN2 | Paralogs for EDN2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for EDN2 gene
- EDN12 EDN32
|
SNPs/Variants for EDN2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for EDN2 (up to first 250kb)
|
Disorders & Mutations for EDN2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 131241
10/20 Novoseek disease relationships for EDN2 gene (see all 20
)
About this table
1 PharmGKB disease relationship for EDN2 geneAbout this table
Human Gene Mutation Database: EDN2 Genetic Association Database: EDN2 Human Genome Epidemiology Navigator: EDN2 (3 documents)
|
Medical News for EDN2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for EDN2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/232 PubMed articles for EDN2 gene (see all 232
):- Quantitative association between a newly identified molecular variant in the endothelin-2 gene and human essential hypertension. (PubMed id 10489105)1, 3, 6, 7 Sharma P....Brown M.J. (1999)
- cDNA cloning and chromosomal assignment of the endothelin 2 gene: vasoactive intestinal contractor peptide is rat endothelin 2. (PubMed id 1840558)1, 3, 4 Bloch K.D.... Quertermous T. (1991)
- Expression of endothelin-2 (ET-2) gene in a human renal adenocarcinoma cell line: purification and cDNA cloning of ET-2. (PubMed id 1725387)1, 3, 4 Onda H....Fujino M. (1991)
- Specific expression of human endothelin-2 (ET-2) gene in a renal adenocarcinoma cell line. Molecular cloning of cDNA encoding the precursor of ET-2 and its characterization. (PubMed id 1701397)1, 3, 4 Ohkubo S.... Fujino M. (1990)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Endothelin-1 and ETA receptor expression in vascular smooth muscle cells from human placenta: a new ETA receptor messenger ribonucleic acid is generated by alternative splicing of exon 3. (PubMed id 9284755)3, 4 Bourgeois C.... Ferre F. (1997)
- The human endothelin family: three structurally and pharmacologically distinct isopeptides predicted by three separate genes. (PubMed id 2649896)3, 4 Inoue A....Masaki T. (1989)
- Endothelin-2 synthesis is stimulated by the type-1 tumour necrosis factor receptor and cAMP: comparison with endothelin-converting enzyme-1 expression. (PubMed id 10750028)1, 3 Lambert G.L....Corder R. (2000)
- Endothelin-2 is a macrophage chemoattractant: implications for macrophage distribution in tumors. (PubMed id 12207323)1, 3 Grimshaw M.J....Balkwill F.R. (2002)
- Immunoreactive endothelin-1, endothelin-2 and big endothelin-1 in follicular fluids of women undergoing ovulation induction for in-vitro fertilization. (PubMed id 8671207)1, 3 Haq A....al-Sedairy S.T. (1996)
|
Search for EDN2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing EDN2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing EDN2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing EDN2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| NIEHS-SNPs | http://egp.gs.washington.edu/data/edn2/ |
|
| | | About This Section
| --
| Services for EDN2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for EDN2:

 | |
 | | | | |
|
 |  |  |
| | | | Tocris compounds for EDN2 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|