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EDN2 Gene

protein-coding   GIFtS: 63

GC01M041717
endothelin 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
ET-2 3
ET2 1, 2
OTTHUMP00000007075 2
PPET2 2, 3
Preproendothelin-2 3
Descriptions
endothelin 2 2
preproendothelin 2 2
External Ids
HGNC: 31771
Entrez Gene: 19072
UniProtKB: P208003
Ensembl: ENSG000001271297
Search outside databases for aliases for EDN2 gene

Previous GC identifers: GC01M041972 GC01M040948 GC01M041407 GC01M041357 GC01M041613

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for EDN2:
This gene encodes a member of the endothelin protein family of secretory vasoconstrictive peptides.
The preproprotein is processed to a short mature form which functions as a ligand for the
endothelin receptors that initiate intracellular signaling events. This gene product is involved
in a wide range of biological processes, such as hypertension and ovulation. [provided by RefSeq]

UniProtKB/Swiss-Prot: EDN2_HUMAN, P20800
Function: Endothelins are endothelium-derived vasoconstrictor peptides

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the EDN2 gene  

Entrez Gene cytogenetic band: 1p34   Ensembl cytogenetic band:  1p34.2   HGNC cytogenetic band: 1p34

EDN2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M041717:     (about GC identifiers)

Start:
41,717,033 bp from pter
End:
41,722,884 bp from pter
Size:
5,852 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000001.9  NT_032977.8  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: EDN2_HUMAN, P20800 (See protein sequence)
Recommended Name: Endothelin-2 precursor  
Size: 178 amino acids; 19960 Da
Subcellular location: Secreted

REFSEQ proteins: NP_001947.1  

ENSEMBL proteins: 
ENSP00000361668 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Sigma-Aldrich Proteins for EDN2  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (pan Endothelin, Endothelin 2)
Human Recombinant Proteins from Abnova (EDN2)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region IEA--
GO:0005615 extracellular space IDA15691296
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Antibodies for EDN2: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for EDN2
Browse R&D Systems for Antibodies
Antibodies from Abcam (pan Endothelin, Endothelin 2), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (EDN2)
Novus Biologicals Antibodies for EDN2

Assays for EDN2: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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3 InterPro domains/families:
 IPR001928 Endothln_tox
 IPR019764 Endothelin_toxin_CS
 IPR015658 ET-2


   GeneDecks  EDN2 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P20800

ProtoNet protein and cluster: P20800

2 Blocks protein families:
IPB003641 Endothelin
IPB003642 Sarafotoxin/bibrotoxin


UniProtKB/Swiss-Prot: EDN2_HUMAN, P20800
Similarity: Belongs to the endothelin/sarafotoxin family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (EDN2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (EDN2)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001956

              Applied Biosystems Silencer® siRNAs for EDN2

              Sigma-Aldrich siRNA for EDN2  
                     Sigma-Aldrich shRNA for EDN2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for EDN2
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001956
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_001956
                                 untagged cDNA clone in CMV expression vector: NM_001956 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_001956

UniProtKB/Swiss-Prot: EDN2_HUMAN, P20800
Function: Endothelins are endothelium-derived vasoconstrictor peptides

Genatlas biochemistry entry for EDN2:
endothelin 2 (vaso-constrictor/pressor peptide),involved in vascular remodeling,commonly expressed
in right atrial tissue,susceptibility gene for essential hypertension

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005179 hormone activity IDA2649896
GO:0031708 endothelin B receptor binding IPI1713452
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(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Millipore Pathway for EDN2
 Selected targets of p53

   GeneDecks  EDN2 for the pathways selected above  
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5/14 Interacting proteins for EDN2 (ENSP000003616683) via UniProtKB, MINT, and/or STRING (see all 14 )
InteractantInteraction Details
GeneCardExternal ID(s)
EDNRAENSP000003150113STRING (score=.998)
EDNRBENSP000003664163STRING (score=.996)
ECE1ENSP000003640283STRING (score=.918)
EDN1ENSP000003686833STRING (score=.916)
EDN3ENSP000003600673STRING (score=.916)
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5/17 Gene Ontology (GO) biological process terms (links to tree view) (see all 17 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0002690 positive regulation of leukocyte chemotaxis IDA9696419
GO:0003058 hormonal regulation of the force of heart contraction TAS1652300
GO:0003099 positive regulation of the force of heart contraction by chemical signal TAS1652300
GO:0003100 regulation of systemic arterial blood pressure by endothelin IDA2649896
GO:0007204 elevation of cytosolic calcium ion concentration IDA1917960
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Compounds for EDN2 available from Tocris Bioscience
CompoundAction CAS number
BMS 182874 hydrochlorideHighly selective, orally active non-peptide ETA antagonist[153042-42-3]
BQ 788 sodium saltSelective ETB antagonist[156161-89-6]
IRL-1620Highly selective ETB agonist[142569-99-1]
FR 139317Highly potent, selective ETA antagonist[142375-60-8]
BQ-123Selective ETA antagonist[136553-81-6]
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10/22 Novoseek chemical compound relationships for EDN2 gene (see all 22 )
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
sarafotoxin 91.82 48 2282471 (3), 1725315 (2), 10455253 (2), 9124371 (2) (see all 32)
fr139317 80.89 2 9831924 (1)
irl 1620 61.09 1 8650075 (1)
inositol triphosphate 33.92 1 8447814 (1)
calcium 30.96 33 8717152 (4), 1407005 (2), 1332876 (2), 8380432 (2) (see all 14)
inositol 1,4,5 trisphosphate 26.46 1 1917960 (1)
125i 21.27 3 1843209 (2)
forskolin 19.69 12 9595397 (4), 10750028 (2), 1652300 (1), 7720804 (1)
nitric oxide 19.18 6 15691296 (3), 18838093 (1), 8401924 (1)
cyclic amp 16.93 1 8294922 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (EDN2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (EDN2)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001956

              Sigma-Aldrich siRNA for EDN2  
                     Sigma-Aldrich shRNA for EDN2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_001956  

REFSEQ mRNAs for EDN2 gene: 

NM_001956.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_001956  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001956
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_001956
                                 untagged cDNA clone in CMV expression vector: NM_001956 

Additional cDNA sequence: 

BC034393.1 M65199.1 S63833.1 S63834.1 S63835.1 S63836.1 S63837.1 S63838.1 
X55177.1 

1 DOTS entry:

DT.207009 

21 AceView cDNA sequences:

BC034393 AW276532 BX119098 S63835 S63837 S63516 S63836 AI628621 
NM_001956 AW452560 S63838 M65199 BI761655 S63833 BI760483 S63834 
BI769422 BV199041 X55177 AI140863 AA570005 

highest scoring ESTs for EDN2:

M65199 BC034393 BI760483 X55177 AA570005 AI140863 AI628621 AW276532 AW452560 BI761655 

Unigene Cluster for EDN2:

Endothelin 2
Hs.1407  [show with all ESTs]
Unigene Representative Sequence: BC034393


GeneLoc Exon Structure

5/7 Alternative Splicing Database (ASD) splice patterns (SP) for EDN2 (see all 7 )

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c
SP1:        -                 -     -                 -                     
SP2:                          -     -                 -                     
SP3:                                            -     -                     
SP4:                                -                 -                     
SP5:                          -     -                                       

About this scheme

ECgene alternative splicing isoforms for EDN2

1 Ensembl transcript including schematic representation:
ENST00000372587  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

EDN2 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for EDN2

1 / 2 / 3

3 probe-sets matching EDN2 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
1092_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 M65199 1.00 1.00 1.00 1

206758_at2, 3 U133-A 1 1.00 1.00 -- -- NM_001956 0.60 1.00 0.82 1

206758_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  EDN2 for binary patterns associated with the probe-sets selected above  
About GeneDecksing
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: CCTCAGCCAG

SOURCE GeneReport for Unigene cluster: Hs.1407

Expression variation in blood from EXPOLDB for EDN2

UniProtKB/Swiss-Prot: EDN2_HUMAN, P20800
Tissue specificity: Expressed in lung, but not in placental stem villi vessels or cultured
placental villi smooth muscle cells

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for EDN2 gene from 5/6 species (see all 6 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
EDN21   -- endothelin 2 79.88(n)
68.05(a)
403508  NM_001003002.1  NP_001003002.1 
chimpanzee
(Pan troglodytes)
EDN21   -- endothelin 2 99.81(n)
99.44(a)
469298  XM_524683.2  XP_524683.2 
cow
(Bos taurus)
EDN21   -- endothelin 2 84(n)
76(a)
319094  NM_175714.2  NP_783645.1 
rat
(Rattus norvegicus)
Edn21   -- endothelin 2 76.95(n)
68(a)
24324  NM_012549.1  NP_036681.1 
mouse
(Mus musculus)
Edn21, 5 45
endothelin 21, 5 78.23(n)1
68.79(a)1
136151  NM_007902.21  NP_031928.21 
 AB0303035  AL6071425  (see all 8)
About this table        Species with no ortholog for EDN2

ENSEMBL Gene Tree for EDN2
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for EDN2 gene
EDN12  EDN32  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/117 NCBI SNPs in EDN2 are shown (see all 117 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 86)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 1 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs66908391,2
A,C,F,H41716770(+) AAGGGA/CTGGCC 1 -- ng5119Minor allele frequency- G:0.00NS EU EA WA NA 1872
rs112102801,2
A,C,F,H41723100(-) TCCATC/ATCCCT 1 -- ng31 trp35Minor allele frequency- A:0.19NS EU EA WA 560
--
rs112102831,2
A,C,F41724445(-) CTGCTC/GTCACC 1 -- ng311Minor allele frequency- G:0.32NS 178
rs66783431,2
C,F,H41716683(+) ACTGTC/AAGCCT 1 -- ng515Minor allele frequency- A:0.06NS EU EA WA 590
rs57981,2
C,F,H41719405(-) ACGTGT/CTCCAG 1 L/F mis1 ese35Minor allele frequency- C:0.00MN EU EA WA 556
rs37682741,2
A,C,F41723970(-) CTGCCG/AGTTCC 1 -- ng311Minor allele frequency- A:0.45NS 162
rs5815881,2
C,F,H41723532(+) AAATGC/TCCCCC 1 -- ng31 tfbs37Minor allele frequency- T:0.00EA NA NS EU WA 628
rs66786921,2
C,F,H41717027(+) AAAAAC/ACAGAG 1 -- ng515Minor allele frequency- A:0.07NS EU EA WA 582
rs58001,2
C,F,H41717277(-) TGGAGG/ACTGGA 1 -- ut3110Minor allele frequency- A:0.46NS MN EU EA WA 1168
rs29846911,2
A,C,F41722899(+) GGGAGC/TGCCTG 1 -- ut511Minor allele frequency- T:0.07NS 150
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HapMap Linkage Disequilibrium images for EDN2 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 131241

10/20 Novoseek disease relationships for EDN2 gene (see all 20 )

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
essential hypertension 35.73 2 10489105 (1)
carcinoma renal cell 27.85 17 1701397 (2), 1722462 (2), 7695628 (2), 1725387 (1) (see all 7)
cardiovascular diseases 24.09 1 10494802 (1)
hypertension pulmonary 18.06 1 10598486 (1)
vascular diseases 9.74 1 16879056 (1)
ewings sarcoma 5.34 1 12193114 (1)
renal failure 2.07 3 16741037 (2)
renal failure chronic 0.00 3 16741037 (1)
necrosis 0.00 3 10750028 (2), 9595397 (1)
melanoma 0.00 1 18758494 (1)
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1 PharmGKB disease relationship for EDN2 gene
Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
essential hypertensionCO  GN  10489105
About this table

Human Gene Mutation Database: EDN2
Genetic Association Database: EDN2
Human Genome Epidemiology Navigator: EDN2 (3 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
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10/232 PubMed articles for EDN2 gene (see all 232 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 1907 HGNC: 3177 AceView: EDN2 Ensembl:ENSG00000127129 euGenes: HUgn1907
ECgene: EDN2 H-InvDB: EDN2
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
NIEHS-SNPshttp://egp.gs.washington.edu/data/edn2/
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for EDN2:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
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  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for EDN2-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
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 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for EDN2 Antibodies for EDN2
 Explore super-pooled esiRNAs Proteins for EDN2
 Lentivirus-delivered shRNAs for EDN2 Browse small molecules at Sigma-Aldrich
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 Recombinant & Natural Proteins  

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 Recombinant Proteins
(pan Endothelin, Endothelin 2)
 Antibodies (pan Endothelin, Endothelin 2)
 Search OriGene for EDN2
 Tocris compounds for EDN2




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for EDN2

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