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Aliases & Descriptions for EDN1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ET1 1, 2 | | HDLCQ7 2, 5 | | OTTHUMP00000016038 2 | | OTTHUMP00000039245 2 | | PPET1 3 | | Preproendothelin-1 3 |
| | | Descriptions |
|---|
| endothelin 1 2 |
|
| | Search outside databases for aliases for EDN1 genePrevious GC identifer: GC06P012348 |
Summaries for EDN1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: EDN1_HUMAN, P05305Function: Endothelins are endothelium-derived vasoconstrictor peptidesGene Wiki entry for EDN1 (Endothelin_1) |
Genomic Location for EDN1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the EDN1 gene 
Entrez Gene cytogenetic band: 6p24.1 Ensembl cytogenetic band: 6p24.1 HGNC cytogenetic band: 6p24.1EDN1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06P012398:
(about GC identifiers)
Start:
|
12,398,515 bp from pter |
End:
|
12,405,413 bp from pter |
Size:
|
6,899 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007592.14
| Proteins for EDN1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: EDN1_HUMAN, P05305 (See
protein sequence)Recommended Name: Endothelin-1 precursor Size: 212 amino acids; 24425 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :1EDN (3D)
 1EDP (3D)
 1T7H (3D)
 1V6R (3D)
 
Secondary accessions: Q96DA1REFSEQ proteins: NP_001946.3
ENSEMBL proteins: ENSP00000368683
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for EDN1: Assays for EDN1: | Protein
Domains/ Families for EDN1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P05305
ProtoNet protein and cluster: P05305 1 Blocks protein family: IPB003641 Endothelin
UniProtKB/Swiss-Prot: EDN1_HUMAN, P05305Similarity: Belongs to the endothelin/sarafotoxin family | Gene Function for EDN1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001955
Applied Biosystems Silencer® siRNAs for EDN1
Sigma-Aldrich siRNA for EDN1  Sigma-Aldrich shRNA for EDN1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001955                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001955                                  untagged cDNA clones in CMV expression vector (see all 2): NM_001955 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001955
UniProtKB/Swiss-Prot: EDN1_HUMAN, P05305Function: Endothelins are endothelium-derived vasoconstrictor peptidesGenatlas biochemistry entry for EDN1:endothelin 1 (vaso-constrictor/pressor peptide),phospholipase C activator,interacting with I16 for induced expression of fetal genes in cardiac myocytes14 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Edn1):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for EDN1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
4 Sigma-Aldrich "Your Favorite Gene" Pathways for EDN1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for EDN1 
5/197 Interacting proteins for EDN1 (ENSP000003686833 P053052) via UniProtKB, MINT, and/or STRING (see all 197
)About this table
5/48 Gene Ontology (GO) biological process terms (links to tree view) (see all 48
): About this table
|
Drugs & Compounds for EDN1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Compounds for EDN1 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| BMS 182874 hydrochloride | Highly selective, orally active non-peptide ETA antagonist | [153042-42-3] | | BQ 788 sodium salt | Selective ETB antagonist | [156161-89-6] | | IRL-1620 | Highly selective ETB agonist | [142569-99-1] | | FR 139317 | Highly potent, selective ETA antagonist | [142375-60-8] | | BQ-123 | Selective ETA antagonist | [136553-81-6] | About this table
10/38 Novoseek chemical compound relationships for EDN1 gene (see all 38
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| sarafotoxin |
91.38 |
235 |
7889304 (8), 8287917 (3), 8587426 (3), 12193054 (3) (see all 99) |
| nitric oxide |
80.57 |
1983 |
14526432 (11), 14695117 (8), 18001528 (8), 17361520 (8) (see all 99) |
| fr139317 |
80.31 |
34 |
9831924 (3), 9595416 (2), 9846633 (2), 9440503 (2) (see all 21) |
| bq 3020 |
79.07 |
8 |
15075338 (3), 10822048 (2), 7647976 (1), 7679333 (1) (see all 5) |
| bq610 |
77.55 |
11 |
10218898 (1), 7796447 (1), 8631621 (1), 10445306 (1) (see all 9) |
| sitaxsentan |
76.00 |
3 |
17314684 (1), 10869264 (1), 16292989 (1) |
| pd 151242 |
75.79 |
1 |
8012722 (1) |
| irl 1620 |
75.17 |
18 |
8575510 (4), 15280069 (3), 9272381 (2), 10705994 (1) (see all 10) |
| pd 142893 |
73.57 |
7 |
9272381 (2), 12147606 (1), 7616437 (1), 8664342 (1) (see all 6) |
| bq 485 |
70.59 |
7 |
9870082 (2), 9806262 (1), 8916955 (1), 11476755 (1) |
About this table
|
Transcripts for EDN1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001955
Sigma-Aldrich siRNA for EDN1  Sigma-Aldrich shRNA for EDN1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001955 REFSEQ mRNAs for EDN1 gene: NM_001955.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001955               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001955                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001955                                  untagged cDNA clones in CMV expression vector (see all 2): NM_001955  Additional cDNA sequence: BC036851.1 5 DOTS entries: DT.215144 DT.99934348 DT.91949623 DT.100777041 DT.121310909 24/143 AceView cDNA sequences (see all 143
):BM680754 BQ015938 T27748 AA937140 CA307702 R07349 BQ009676 CR591383 BU728406 CA306604 AA302119 BQ185104 CB105582 BF590429 BG054871 CA426258 CB105976 CA307269 CA309734 AI126868 F02908 AW043551 BM671893 CB105477
highest scoring ESTs for EDN1:AA302119 AA302475 AA603817 AA716281 AA926633 AI002660 AI039852 AI094124 AI095619 AI126868 Unigene Clusters for EDN1: Endothelin 1 Hs.511899 [show with all ESTs], Hs.713645 [show with all ESTs]Unigene Representative Sequences: NM_001955, BC036851
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for EDN1
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5 | |
| SP1: | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for EDN1
1 Ensembl transcript including schematic representation: ENST00000379375
|
Expression for EDN1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| EDN1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for EDN1
1 / 2 / 3 5 probe-sets matching EDN1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TAAAATTAGA
SOURCE GeneReport for Unigene clusters: Hs.511899 Hs.713645 UniProtKB/Swiss-Prot: EDN1_HUMAN, P05305Tissue specificity: Expressed in lung, placental stem villi vessels and in cultured placental vascular smooth muscle cells |
Orthologs for EDN1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for EDN1 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for EDN1
ENSEMBL Gene Tree for EDN1 | Paralogs for EDN1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for EDN1 gene
- EDN22 EDN32
|
SNPs/Variants for EDN1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for EDN1 (up to first 250kb)
|
Disorders & Mutations for EDN1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 131240 10/97 Novoseek disease relationships for EDN1 gene (see all 97
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| hypertension pulmonary |
78.62 |
331 |
8594905 (6), 16864942 (4), 10625089 (4), 8497283 (4) (see all 99) |
| vasospasm |
72.95 |
93 |
9254095 (6), 12910400 (4), 11053063 (3), 14623768 (3) (see all 55) |
| essential hypertension |
67.00 |
146 |
9283062 (6), 10522417 (4), 12425201 (3), 7986462 (3) (see all 70) |
| atherosclerosis |
66.74 |
226 |
11755940 (4), 9647335 (4), 15320823 (4), 18673159 (4) (see all 99) |
| hypertension arterial |
65.66 |
54 |
11675821 (3), 12628956 (2), 18925520 (2), 9270291 (1) (see all 38) |
| heart failure |
65.43 |
284 |
8176102 (6), 9861298 (5), 16076689 (5), 8606275 (4) (see all 99) |
| pulmonary hypertension secondary |
63.63 |
13 |
10194659 (2), 18211765 (1), 8594905 (1), 10444023 (1) (see all 11) |
| cardiovascular diseases |
62.36 |
102 |
17617392 (2), 19057845 (2), 11078363 (2), 8981573 (1) (see all 71) |
| cerebral vasospasm |
60.98 |
46 |
10713190 (4), 11340231 (3), 10763512 (3), 15104415 (2) (see all 26) |
| preeclampsia |
60.26 |
224 |
11167202 (5), 12193142 (5), 8372594 (5), 17261879 (5) (see all 80) |
About this table
Human Gene Mutation Database: EDN1 Genetic Association Database: EDN1 Human Genome Epidemiology Navigator: EDN1 (89 documents)
|
Medical News for EDN1(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for EDN1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/2953 PubMed articles for EDN1 gene (see all 2953
):- Evaluation of the Lys198Asn and -134delA genetic polymorphisms of the endothelin-1 gene. (PubMed id 15198485)1, 3, 6 Tanaka C....Miyata T. (2004)
- [Correlation between polymorphism of TaqI of ET-1 gene and cirrhotic portal hypertension] (PubMed id 12887757)1, 3, 6 Lin J.S....Xiong P. (2003)
- Genes encoding endothelin-converting enzyme-1 and endothelin-1 interact to influence blood pressure in women: the EVA study. (PubMed id 15126915)1, 3, 6 Funalot B....Ducimetiere P. (2004)
- Association between glaucoma and gene polymorphism of endothelin type A receptor. (PubMed id 15988412)1, 3, 6 Ishikawa K....Mashima Y. (2005)
- The double heterozygote of two endothelin-1 gene polymorphisms (G8002A and -3A/-4A) is related to big endothelin levels in chronic heart failure. (PubMed id 12565798)1, 3, 6 Vasku A....Vacha J. (2002)
- Association between the endothelin-1 gene Lys198Asn polymorphism blood pressure and plasma endothelin-1 levels in normal and pre-eclamptic pregnancy. (PubMed id 11593097)1, 3, 6 Barden A.E....Van Bockxmeer F.M. (2001)
- Gender-specific association between preproendothelin-1 genotype and reduction of systolic blood pressure during antihypertensive treatment--results from the Swedish Irbesartan Left Ventricular Hypertrophy Investigation versus Atenolol (SILVHIA). (PubMed id 15188945)1, 3, 6 Hallberg P....Melhus H. (2004)
- [Relationship of endothelin-1 (ET-1) TaqI and tumor necrosis factor (TNF) a gene polymorphism with portal hypertension in liver cirrhosis.] (PubMed id 15623376)1, 3, 6 Cheng Y.Q....Xiong P. (2004)
- Endothelin-1 gene and progression of blood pressure and left ventricular mass: longitudinal findings in youth. (PubMed id 15505112)1, 3, 6 Dong Y....Snieder H. (2004)
- Endothelin-1 gene polymorphism in patients with malignant arrhythmias. (PubMed id 15838369)1, 3, 6 Kozak M....Vacha J. (2004)
|
Search for EDN1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing EDN1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing EDN1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing EDN1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| NIEHS-SNPs | http://egp.gs.washington.edu/data/edn1/ | | R&D Systems' cytokine source book: Endothelin-1 | http://www.rndsystems.com/molecule_detail.aspx?m=1364 | | Wikipedia | http://en.wikipedia.org/wiki/Endothelin |
|
| | | About This Section
| --
| Services for EDN1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for EDN1:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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