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Aliases for EDN1 Gene

Aliases for EDN1 Gene

  • Endothelin 1 2 3 5
  • Preproendothelin-1 3 4
  • PPET1 3 4
  • Endothelin-1 3
  • ARCND3 3
  • HDLCQ7 3
  • ET1 3
  • QME 3

External Ids for EDN1 Gene

Previous GeneCards Identifiers for EDN1 Gene

  • GC06P012348
  • GC06P012398

Summaries for EDN1 Gene

Entrez Gene Summary for EDN1 Gene

  • This gene encodes a preproprotein that is proteolytically processed to generate a secreted peptide that belongs to the endothelin/sarafotoxin family. This peptide is a potent vasoconstrictor and its cognate receptors are therapeutic targets in the treatment of pulmonary arterial hypertension. Aberrant expression of this gene may promote tumorigenesis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2015]

GeneCards Summary for EDN1 Gene

EDN1 (Endothelin 1) is a Protein Coding gene. Diseases associated with EDN1 include Question Mark Ears, Isolated and Auriculocondylar Syndrome 3. Among its related pathways are AGE-RAGE signaling pathway in diabetic complications and Prostaglandin Synthesis and Regulation. GO annotations related to this gene include receptor binding and hormone activity. An important paralog of this gene is EDN2.

UniProtKB/Swiss-Prot for EDN1 Gene

  • Endothelins are endothelium-derived vasoconstrictor peptides.

Tocris Summary for EDN1 Gene

  • The endothelin family consists of highly potent vasoconstrictive peptides. Three endogenous isoforms are known to exist - ET-1, ET-2 and ET-3. Due to their physiological role as vasoactive peptides, endothelins have been linked to certain cardiac, vascular and renal diseases; endothelin antagonists may therefore play an important role in the treatment of these conditions. Two distinct endothelin receptors have so far been cloned in mammals, classified as ETA and ETB receptors.

Gene Wiki entry for EDN1 Gene

Additional gene information for EDN1 Gene

No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EDN1 Gene

Genomics for EDN1 Gene

Regulatory Elements for EDN1 Gene

Enhancers for EDN1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H012322 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +63.1 63135 3.8 ARID4B BRCA1 SLC30A9 ELK1 FOS SP5 MIER2 PPARG ZNF592 KAT8 EDN1 RN7SKP293 SUMO2P12 LOC105374931
GH06H012362 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +103.7 103717 5.3 ELF3 TBL1XR1 BMI1 BATF RAD21 RARA YY1 ZNF207 ATF7 ZNF548 HIVEP1 EDN1 RN7SKP293 LOC105374931 SUMO2P12
GH06H012601 1.5 FANTOM5 Ensembl ENCODE dbSUPER 13.3 +341.6 341638 2.1 CTCF TBL1XR1 EBF1 RAD21 ZKSCAN1 GATA3 SMC3 ZNF143 PRDM10 RUNX3 EDN1 LINC02530 PHACTR1
GH06H011648 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -608.6 -608556 8.5 FOXA2 ZSCAN4 SIN3A YBX1 BATF ZBTB40 RAD21 ZEB1 YY1 ETS1 EDN1 C6orf52 ADTRP GC06P011650 LOC340184
GH06H011585 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -672.0 -671955 8.3 FOXA2 RB1 RAD21 RFX5 YY1 SCRT2 ZNF143 ATF7 MIXL1 ZNF654 TMEM170B EDN1 PIR31990 ENSG00000271897
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EDN1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EDN1 Gene

Genomic Locations for EDN1 Gene
35,981 bases
Plus strand

Genomic View for EDN1 Gene

Genes around EDN1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EDN1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EDN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EDN1 Gene

Proteins for EDN1 Gene

  • Protein details for EDN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein Accession:
    Secondary Accessions:
    • Q96DA1

    Protein attributes for EDN1 Gene

    212 amino acids
    Molecular mass:
    24425 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for EDN1 Gene

neXtProt entry for EDN1 Gene

Post-translational modifications for EDN1 Gene

  • Glycosylation at posLast=100100
  • Modification sites at PhosphoSitePlus

Other Protein References for EDN1 Gene

Antibody Products

Assay Products

No data available for DME Specific Peptides for EDN1 Gene

Domains & Families for EDN1 Gene

Gene Families for EDN1 Gene

Human Protein Atlas (HPA):
  • Cancer-related genes
  • Candidate cardiovascular disease genes
  • Disease related genes
  • Plasma proteins
  • Predicted secreted proteins

Protein Domains for EDN1 Gene

Suggested Antigen Peptide Sequences for EDN1 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the endothelin/sarafotoxin family.
  • Belongs to the endothelin/sarafotoxin family.
genes like me logo Genes that share domains with EDN1: view

Function for EDN1 Gene

Molecular function for EDN1 Gene

GENATLAS Biochemistry:
endothelin 1 (vaso-constrictor/pressor peptide),phospholipase C activator,interacting with I16 for induced expression of fetal genes in cardiac myocytes
UniProtKB/Swiss-Prot Function:
Endothelins are endothelium-derived vasoconstrictor peptides.

LifeMap Function Summary for EDN1 Gene

During embryonic development, EDN1 as signaling molecule is secreted from the following cells

Phenotypes From GWAS Catalog for EDN1 Gene

Gene Ontology (GO) - Molecular Function for EDN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005102 receptor binding IEA --
GO:0005125 cytokine activity IDA 19767294
GO:0005179 hormone activity IDA 2649896
GO:0005515 protein binding IPI 23597562
GO:0031707 endothelin A receptor binding IDA 10770212
genes like me logo Genes that share ontologies with EDN1: view
genes like me logo Genes that share phenotypes with EDN1: view

Human Phenotype Ontology for EDN1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for EDN1 Gene

MGI Knock Outs for EDN1:

Animal Model Products

miRNA for EDN1 Gene

miRTarBase miRNAs that target EDN1

Clone Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for EDN1 Gene

Localization for EDN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for EDN1 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for EDN1 gene
Compartment Confidence
extracellular 5
endoplasmic reticulum 4
plasma membrane 3
nucleus 3
cytosol 3
golgi apparatus 3
cytoskeleton 2
mitochondrion 2
peroxisome 2
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (2)
  • Nucleoli (2)
  • Nucleus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for EDN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IEA,IDA 10770212
GO:0005737 cytoplasm IDA 12379507
GO:0030133 transport vesicle TAS --
GO:0033093 Weibel-Palade body IEA --
genes like me logo Genes that share ontologies with EDN1: view

Pathways & Interactions for EDN1 Gene

genes like me logo Genes that share pathways with EDN1: view

SIGNOR curated interactions for EDN1 Gene


Gene Ontology (GO) - Biological Process for EDN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IDA 19767294
GO:0001501 skeletal system development IEA --
GO:0001516 prostaglandin biosynthetic process IDA 9492062
GO:0001569 branching involved in blood vessel morphogenesis IEA --
GO:0001666 response to hypoxia IEA --
genes like me logo Genes that share ontologies with EDN1: view

Drugs & Compounds for EDN1 Gene

(97) Drugs for EDN1 Gene - From: DrugBank, PharmGKB, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Nitric Oxide Approved Pharma 631
Atenolol Approved Pharma Antagonist 107
Bevacizumab Approved, Investigational Pharma VEGF antagonist, Therapeutic Antibodies, Vascular endothelial growth factor (VEGF) and VEGF receptor (VEGFR) inhibitors 2052
Irbesartan Approved, Investigational Pharma Antagonist Angiotensin II inhibitor 102
TBC-3711 Investigational Pharma Target 0

(51) Additional Compounds for EDN1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs

(5) Tocris Compounds for EDN1 Gene

Compound Action Cas Number
Endothelin 1 (human, porcine) Potent vasoconstrictor peptide 117399-94-7
Endothelin 2 (human) ETA/ETB agonist 123562-20-9
Endothelin 3 (human, rat) Potent vasoconstrictor 117399-93-6
Sarafotoxin S6a Endothelin receptor agonist 126738-34-9
Sarafotoxin S6b Endothelin receptor agonist; non-selective 116303-65-2
genes like me logo Genes that share compounds with EDN1: view

Transcripts for EDN1 Gene

mRNA/cDNA for EDN1 Gene

Unigene Clusters for EDN1 Gene

Endothelin 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EDN1 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5
SP1: -
SP2: -

Relevant External Links for EDN1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for EDN1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EDN1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for EDN1 Gene

This gene is overexpressed in Adipose - Subcutaneous (x4.1).

Protein differential expression in normal tissues from HIPED for EDN1 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for EDN1 Gene

Protein tissue co-expression partners for EDN1 Gene

NURSA nuclear receptor signaling pathways regulating expression of EDN1 Gene:


SOURCE GeneReport for Unigene cluster for EDN1 Gene:


mRNA Expression by UniProt/SwissProt for EDN1 Gene:

Tissue specificity: Expressed in lung, placental stem villi vessels and in cultured placental vascular smooth muscle cells.

Evidence on tissue expression from TISSUES for EDN1 Gene

  • Pancreas(4.3)
  • Heart(3.7)
  • Nervous system(3.7)
  • Muscle(3.5)
  • Blood(3.4)
  • Lung(3.4)
  • Kidney(3.2)
  • Liver(2.7)
  • Skin(2.5)
  • Adrenal gland(2.4)
  • Intestine(2.3)
  • Stomach(2.2)
  • Eye(2.1)
  • Urine(2.1)

Phenotype-based relationships between genes and organs from Gene ORGANizer for EDN1 Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
  • digestive
  • integumentary
  • nervous
  • respiratory
  • skeletal muscle
  • skeleton
Head and neck:
  • brain
  • cheek
  • chin
  • ear
  • epiglottis
  • face
  • head
  • jaw
  • larynx
  • lip
  • mandible
  • maxilla
  • mouth
  • neck
  • outer ear
  • pharynx
  • skull
  • tongue
  • tooth
  • vocal cord
  • lung
  • trachea
  • skin
genes like me logo Genes that share expression patterns with EDN1: view

Orthologs for EDN1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for EDN1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia EDN1 33 34
  • 98.26 (n)
(Canis familiaris)
Mammalia EDN1 33 34
  • 83.17 (n)
(Bos Taurus)
Mammalia EDN1 33 34
  • 83 (n)
(Rattus norvegicus)
Mammalia Edn1 33
  • 79.5 (n)
(Mus musculus)
Mammalia Edn1 33 16 34
  • 79.17 (n)
(Monodelphis domestica)
Mammalia EDN1 34
  • 59 (a)
(Ornithorhynchus anatinus)
Mammalia EDN1 34
  • 53 (a)
(Gallus gallus)
Aves EDN1 33 34
  • 61.26 (n)
(Anolis carolinensis)
Reptilia EDN1 34
  • 45 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia edn1 33
  • 55.05 (n)
(Danio rerio)
Actinopterygii edn1 33 34
  • 53.06 (n)
Species where no ortholog for EDN1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for EDN1 Gene

Gene Tree for EDN1 (if available)
Gene Tree for EDN1 (if available)

Paralogs for EDN1 Gene

Paralogs for EDN1 Gene

(1) SIMAP similar genes for EDN1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with EDN1: view

Variants for EDN1 Gene

Sequence variations from dbSNP and Humsavar for EDN1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs587777231 Pathogenic, Auriculocondylar syndrome 3 (ARCND3) [MIM:615706] 12,293,978(+) GGTCC(A/G)AGAGA reference, missense
rs587777232 Pathogenic, Auriculocondylar syndrome 3 (ARCND3) [MIM:615706] 12,292,506(+) CACTC(A/C)CGAGT reference, missense
rs587777233 Pathogenic, Question mark ears, isolated (QME) [MIM:612798] 12,292,467(+) GTGTG(A/T)CTACT reference, missense
rs587777234 Pathogenic 12,293,956(+) CCGTA(G/T)GGACT reference, stop-gained
rs5370 other 12,296,022(+) GGCAA(G/T)CCCTC reference, missense

Structural Variations from Database of Genomic Variants (DGV) for EDN1 Gene

Variant ID Type Subtype PubMed ID
nsv830586 CNV gain 17160897
nsv509117 CNV insertion 20534489
nsv508394 CNV deletion 20534489

Variation tolerance for EDN1 Gene

Residual Variation Intolerance Score: 63.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.42; 71.31% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for EDN1 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EDN1 Gene

Disorders for EDN1 Gene

MalaCards: The human disease database

(96) MalaCards diseases for EDN1 Gene - From: HGMD, OMIM, ClinVar, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
question mark ears, isolated
  • congenital auricular cleft
auriculocondylar syndrome 3
  • arcnd3
auriculo-condylar syndrome
  • auriculocondylar syndrome
renal hypertension
  • hypertension renal
meconium aspiration syndrome
  • meconium aspiration
- elite association - COSMIC cancer census association via MalaCards
Search EDN1 in MalaCards View complete list of genes associated with diseases


  • Auriculocondylar syndrome 3 (ARCND3) [MIM:615706]: A craniofacial malformation syndrome characterized by variable mandibular anomalies, including mild to severe micrognathia, temporomandibular joint ankylosis, cleft palate, and a characteristic ear malformation that consists of separation of the lobule from the external ear, giving the appearance of a question mark (question-mark ear). Other frequently described features include prominent cheeks, cupped and posteriorly rotated ears, preauricular tags, and microstomia. {ECO:0000269 PubMed:24268655}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Question mark ears, isolated (QME) [MIM:612798]: An auricular abnormality characterized by a cleft between the lobule and the lower part of the helix, sometimes accompanied by a prominent or deficient upper part of the helix, shallow skin dimple on the posterior surface of the ear, or transposition of the ear lobe/antitragus. {ECO:0000269 PubMed:24268655}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for EDN1

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with EDN1: view

No data available for Genatlas for EDN1 Gene

Publications for EDN1 Gene

  1. Investigating the association between K198N coding polymorphism in EDN1 and hypertension, lipoprotein levels, the metabolic syndrome and cardiovascular disease. (PMID: 18288492) Wiltshire S … Beilby JP (Human genetics 2008) 3 4 45 60
  2. Genetic analysis of 103 candidate genes for coronary artery disease and associated phenotypes in a founder population reveals a new association between endothelin-1 and high-density lipoprotein cholesterol. (PMID: 17357073) Pare G … Gaudet D (American journal of human genetics 2007) 3 4 45 60
  3. Evaluation of the Lys198Asn and -134delA genetic polymorphisms of the endothelin-1 gene. (PMID: 15198485) Tanaka C … Miyata T (Hypertension research : official journal of the Japanese Society of Hypertension 2004) 3 22 45 60
  4. Mutations in endothelin 1 cause recessive auriculocondylar syndrome and dominant isolated question-mark ears. (PMID: 24268655) Gordon CT … Amiel J (American journal of human genetics 2013) 3 4 60
  5. No evidence of an association between two genes, EDN1 and ACE, and childhood-onset mood disorders. (PMID: 19475602) Dempster EL … International Consortium for Childhood-Onset Mood Disorders (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2010) 3 45 60

Products for EDN1 Gene

Sources for EDN1 Gene