Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

EDN1 Gene

protein-coding   GIFtS: 69
GCID: GC06P012290

endothelin 1

 Explore 308 diseases affiliated with
EDN1 via our new
 Human Malady Compendium 
Biological research products
for EDN1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Endothelin 11 2     Endothelin-11
ET11 2     Preproendothelin-13
PPET12 3     Preproendothelin-13
HDLCQ72 5     

External Ids:    HGNC: 31761   Entrez Gene: 19062   Ensembl: ENSG000000784017   OMIM: 1312405   UniProtKB: P053053   

Export aliases for EDN1 gene to outside databases

Previous GC identifers: GC06P012348 GC06P012398


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for EDN1:
The protein encoded by this gene is proteolytically processed to release a secreted peptide termed endothelin 1. This
peptide is a potent vasoconstrictor and is produced by vascular endothelial cells. Endothelin 1 also can affect the
central nervous system. Two transcript variants encoding different isoforms have been found for this gene. (provided
by RefSeq, Nov 2009)

UniProtKB/Swiss-Prot: EDN1_HUMAN, P05305
Function: Endothelins are endothelium-derived vasoconstrictor peptides

summary for EDN1:
The endothelin family consists of highly potent vasoconstrictive peptides. Three endogenous isoforms are
known to exist, ET-1, ET-2 and ET-3, and two distinct endothelin receptors have so far been cloned in
mammals, classified as ETA and ETB receptors. Endothelin receptors are widely expressed in all tissues,
which is consistent with their physiological role as vasoactive peptides. They are also localized to
non-vascular structures including epithelial cells, glia and neurons. The principle physiological role of
endothelin receptors is the maintenance of vascular tone. They also have co-mitogenic activity, potentiating
the effects of other growth factors such as PDGF.

Gene Wiki entry for EDN1 (Endothelin 1)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000006.11  NC_018917.1  NT_007592.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the EDN1 gene promoter:
         FOXI1   GATA-6   p53   Nkx2-5   NF-kappaB1   NF-kappaB   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): EDN1 promoter sequence
   Search SABiosciences Chromatin IP Primers for EDN1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat EDN1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p24.1   Ensembl cytogenetic band:  6p24.1   HGNC cytogenetic band: 6p24.1

EDN1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
EDN1 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06P012290:  view genomic region     (about GC identifiers)

Start:
12,290,529 bp from pter      End:
12,297,427 bp from pter
Size:
6,899 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: EDN1_HUMAN, P05305 (See protein sequence)
Recommended Name: Endothelin-1 precursor  
Size: 212 amino acids; 24425 Da
Subcellular location: Secreted
4 PDB 3D structures from and Proteopedia for EDN1:
1EDN (3D)        1EDP (3D)        1T7H (3D)        1V6R (3D)    
Secondary accessions: Q96DA1

Explore the universe of human proteins at neXtProt for EDN1: NX_P05305

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P05305

  • EDN1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001161791.1  NP_001946.3  

    ENSEMBL proteins: 
     ENSP00000368683  
    Reactome Protein details: P05305
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Enzo Life Sciences proteins for EDN1
    OriGene Purified Protein: EDN1
    OriGene Protein Over-expression Lysate (see all 2): EDN1
    OriGene Custom Protein Services for EDN1 
    GenScript Custom Purified and Recombinant Proteins Services for EDN1
    Novus Biologicals EDN1 Proteins
    Novus Biologicals EDN1 Lysates
    Browse Sino Biological Recombinant Proteins
    ProSpec Recombinant Protein for EDN1
    Uscn Proteins for EDN1

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region TAS--
    GO:0005615extracellular space IDA15691296
    GO:0005737cytoplasm IDA12379507


    EDN1 for ontologies           About GeneDecksing



    EDN1 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of EDN1
    R&D Systems Antibodies for EDN1 (Endothelin-1)
    OriGene Antibodies: EDN1
    OriGene Custom Antibody Services for EDN1 
    GenScript Custom Superior Antibodies Services for EDN1
    Novus Biologicals EDN1 Antibodies
    Search for Antibodies for EDN1 at Abcam  
    Uscn Antibodies for EDN1
    ThermoFisher Antibody for EDN1

    Assay Products for EDN1: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    R&D Systems ELISAs for EDN1 (Endothelin-1)         (see all)
    GenScript Custom Assay Services for EDN1
    Enzo Life Sciences assays for EDN1
    Uscn ELISAs and CLIAs for EDN1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    EDN1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR001928 Endothln-like_toxin
     IPR020475 Bibrotoxin/Sarafotoxin-D
     IPR019764 Endothelin_toxin_CS

    Graphical View of Domain Structure for InterPro Entry P05305

    ProtoNet protein and cluster: P05305

    1 Blocks protein family: IPB003641 Endothelin

    UniProtKB/Swiss-Prot: EDN1_HUMAN, P05305
    Similarity: Belongs to the endothelin/sarafotoxin family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: EDN1_HUMAN, P05305
    Function: Endothelins are endothelium-derived vasoconstrictor peptides

         Genatlas biochemistry entry for EDN1:
    endothelin 1 (vaso-constrictor/pressor peptide),phospholipase C activator,interacting with I16 for induced expression
    of fetal genes in cardiac myocytes

         Summary:  
    During embryonic development, EDN1 as signaling molecule is secreted from the following cells: Branchial Arch 1 Ectoderm Cells in Branchial Arch 1, Branchial Arch 2 Ectoderm Cells in Branchial Arch 2

    It affects the following cells: Cardiac Neural Crest Cells in Branchial Arch 3,4,6, Cranial Neural Crest Cells in Branchial Arch 1 (see all 4).

    miRNA
    Products:
        
    miRTarBase miRNAs that target EDN1:
    hsa-mir-199a-5p (MIRT005432), hsa-mir-155 (MIRT004455)

    OriGene 3'-UTR Clone: EDN1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat EDN1
    8/26 QIAGEN miScript miRNA Assays for microRNAs that regulate EDN1 (see all 26):
    hsa-miR-3673 hsa-let-7d hsa-miR-4328 hsa-miR-202 hsa-miR-301a hsa-let-7c hsa-let-7g hsa-miR-629*
    SwitchGear 3'UTR luciferase reporter plasmidEDN1 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for EDN1 (see all 7)
    OriGene shRNA RFP: EDN1
    OriGene siRNA: EDN1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat EDN1

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for EDN1

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for EDN1 (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for EDN1 (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 2): EDN1 (NM_001168319)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for EDN1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat EDN1 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for EDN1
    Search LifeMap BioReagents cell lines for EDN1

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for EDN1

    Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005102receptor binding ----
    GO:0005125cytokine activity IDA19767294
    GO:0005179hormone activity IDA2649896
    GO:0005515protein binding ----
    GO:0031707endothelin A receptor binding IDA10770212


    EDN1 for ontologies           About GeneDecksing


    Animal Models:
         Mouse knock-outs for EDN1: Edn1tm1Utj Edn1tm1.1Ywa
         13 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Edn1):
     cardiovascular system  craniofacial  digestive/alimentary  embryogenesis  endocrine/exocrine gland 
     hearing/vestibular/ear  homeostasis/metabolism  mortality/aging  muscle  nervous system 
     no phenotypic analysis  renal/urinary system  skeleton 

    EDN1 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/17 super-pathways (see all 17About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Development_Endothelin-1/EDNRA transactivation of EGFR
    Development_Endothelin-1/EDNRA transactivation of EGFR1.00
    Development Endothelin-1/EDNRA signaling0.41
    Development Endothelin-1/EDNRA transactivation of EGFR1.00
    Development_Endothelin-1/EDNRA signaling0.41
    2Class A/1 (Rhodopsin-like receptors)
    Class A/1 (Rhodopsin-like receptors)1.00
    Peptide ligand-binding receptors0.61
    GPCR ligand binding0.75
    3Signaling by GPCR
    Signaling by GPCR1.00
    Signal Transduction0.56
    GPCR downstream signaling0.89
    4Immune response_IL-1 signaling pathway
    Immune response_IL-1 signaling pathway1.00
    Immune response IL-1 signaling pathway0.98
    5G alpha (q) signalling events
    G alpha (q) signalling events1.00
    Gastrin-CREB signalling pathway via PKC and MAPK0.90

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    5 EMD Millipore Pathways for EDN1
        Development EDNRB signaling
    Development Leptin signaling via JAK/STAT and MAPK cascades
    Development Endothelin-1/EDNRA signaling
    Development Endothelin-1/EDNRA transactivation of EGFR
    Immune response IL-1 signaling pathway

    3 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for EDN1
        Endothelin-1 Signaling Pathway
    HIF1Alpha Pathway
    NFAT and Cardiac Hypertrophy

    5 GeneGo (Thomson Reuters) Pathways for EDN1
        Development Leptin signaling via JAK/STAT and MAPK cascades
    Development Endothelin-1/EDNRA transactivation of EGFR
    Development EDNRB signaling
    Development Endothelin-1/EDNRA signaling
    Immune response IL-1 signaling pathway

    5/6 BioSystems Pathways for EDN1 (see all 6
        MicroRNAs in cardiomyocyte hypertrophy
    Endothelin
    Prostaglandin Synthesis and Regulation
    HIF-1-alpha transcription factor network
    Endothelins

    5/8        Reactome Pathways for EDN1 (see all 8)
        GPCR downstream signaling
    Peptide ligand-binding receptors
    Gastrin-CREB signalling pathway via PKC and MAPK
    Signaling by GPCR
    GPCR ligand binding


    1         Kegg Pathway  (Kegg details for EDN1):
        Melanogenesis


    EDN1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for EDN1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/163 Interacting proteins for EDN1 (P053052, 3 ENSP000003686834) via UniProtKB, MINT, STRING, and/or I2D (see all 163)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    BAG6P463792, 3MINT-63406 I2D: score=5 
    COPS6Q7L5N12, 3MINT-63405 I2D: score=5 
    UBQLN4Q9NRR52, 3, ENSP000003572924MINT-2858310 I2D: score=3 STRING: ENSP00000357292
    ADMP353183, ENSP000002781754I2D: score=1 STRING: ENSP00000278175
    KELP232763, ENSP000003474094I2D: score=1 STRING: ENSP00000347409
    About this table

    Gene Ontology (GO): 5/83 biological process terms (GO ID links to tree view) (see all 83):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000122negative regulation of transcription from RNA polymerase II promoter IDA19767294
    GO:0001501skeletal system development ----
    GO:0001516prostaglandin biosynthetic process IDA9492062
    GO:0001569patterning of blood vessels IEA--
    GO:0001666response to hypoxia IEA--


    EDN1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    EDN1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Enzo Life Sciences drugs & compounds for EDN1

    Compounds for EDN1 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    BMS 182874 hydrochloride Highly selective, orally active non-peptide ETA antagonist [153042-42-3]
    BQ 788 sodium saltSelective ETB antagonist[156161-89-6]
    IRL-1620Highly selective ETB agonist[142569-99-1]
    FR 139317 Highly potent, selective ETA antagonist [142375-60-8]
    BQ-123Selective ETA antagonist[136553-81-6]

    1 HMDB Compound for EDN1    About this table
    CompoundSynonyms CAS #PubMed Ids
    Nitric oxideMononitrogen monoxide (see all 9)10102-43-9--
    10/138 Novoseek chemical compound relationships for EDN1 gene (see all 138)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    bq123 91.8 135 8735635 (4), 11687541 (3), 10604982 (2), 12193073 (2) (see all 86)
    sarafotoxin 91.3 241 7889304 (7), 8287917 (3), 8587426 (3), 12193054 (3) (see all 99)
    bq788 89.3 77 16318777 (3), 15765100 (3), 9595416 (2), 9846633 (2) (see all 52)
    bosentan 86.4 119 17322637 (6), 19477379 (4), 8587420 (4), 8823230 (3) (see all 54)
    phosphoramidon 85 261 7510004 (8), 7550091 (7), 8406292 (6), 8528566 (6) (see all 80)
    fr139317 81 36 8032583 (3), 9831924 (3), 9595416 (2), 9846633 (2) (see all 21)
    nitric oxide 80.9 2131 14526432 (11), 14695117 (8), 18001528 (8), 17361520 (8) (see all 99)
    bq 3020 79 8 15075338 (3), 10822048 (2), 7647976 (1), 7679333 (1) (see all 5)
    bq610 77.9 12 10218898 (1), 7796447 (1), 10445306 (1), 8631621 (1) (see all 10)
    prostacyclin 77.5 354 15300217 (6), 8751735 (6), 9423756 (6), 7775630 (6) (see all 99)

    1 PharmGKB related drug/compound annotation for EDN1 gene
    Drug/compound PharmGKB Annotation
    muraglitazarCA  
    About this table

    Search CenterWatch for drugs/clinical trials and news about EDN1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for EDN1 gene (2 alternative transcripts): 
    NM_001168319.1  NM_001955.4  

    Unigene Clusters for EDN1:

    Endothelin 1
    Hs.511899  [show with all ESTs], Hs.713645  [show with all ESTs]
    Unigene Representative Sequences: NM_001955, BC036851
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000379375(uc010jpb.3 uc003nad.3 uc003naf.4 uc003nae.4)


    miRNA
    Products:
         
    OriGene 3'-UTR Clone: EDN1
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat EDN1
    8/26 QIAGEN miScript miRNA Assays for microRNAs that regulate EDN1 (see all 26):
    hsa-miR-3673 hsa-let-7d hsa-miR-4328 hsa-miR-202 hsa-miR-301a hsa-let-7c hsa-let-7g hsa-miR-629*
    SwitchGear 3'UTR luciferase reporter plasmidEDN1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for EDN1 (see all 7)
    OriGene shRNA RFP: EDN1
    OriGene siRNA: EDN1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat EDN1
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for EDN1 (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for EDN1 (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 2): EDN1 (NM_001168319)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for EDN1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat EDN1 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for EDN1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat EDN1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat EDN1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat EDN1

    Additional cDNA sequence: BC036851.1 

    5 DOTS entries:

    DT.215144  DT.99934348  DT.91949623  DT.100777041  DT.121310909 

    24/143 AceView cDNA sequences (see all 143):

    AI126868 T27748 CB105599 CR591383 AA937140 CA309734 BM680754 BQ185104 
    AW043551 BM977229 CB105582 AA663956 F02908 BQ009676 CA306604 CR605456 
    BU676234 CB105477 CA426258 BM671893 AA302119 BM974937 CB105976 AW044634 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for EDN1    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5
    SP1:                    -                           
    SP2:                    -                           
    SP3:                                                


    ECgene alternative splicing isoforms for EDN1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    EDN1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CTTTGTTTTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    EDN1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    10/12 LifeMap In Vivo Development Anatomical Compartments/Cells (see all 12
    Tissue Anatomical Compartment CellCategory (developmental path)
    Head MesenchymeBranchial Arch 1Branchial Arch 1 Ectoderm CellsEctoderm, Epidermis
    Head MesenchymeBranchial Arch 2Branchial Arch 2 Ectoderm CellsEctoderm, Epidermis
    HeartEndocardiumEndocardial CellsEndocardium
    Gut TubeMidgutMidgut Endoderm CellsEndoderm
    Spinal CordSpinal Dorsal ColumnsDorsal Spinal Cord Progenitor CellsSpinal Cord
    Spinal CordSpinal Ventral ColumnsVentral Spinal Cord Progenitor CellsMotor Neurons
    BrainMedulla OblongataBrain
    Gut TubeMidgutGut Tube
    Neural TubeMetencephalonNeural Tube
    Neural TubeTelencephalonNeural Tube
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 10/13 LifeMap Cells (see all 13
    NameCategory
    PureStem™ endothelial progenitor 30-MV2-12 (Embryonic Progenitor Cell)Blood, Endothelium
    PureStem™ endothelial Progenitor 30-SM2-3 (Embryonic Progenitor Cell)Blood, Endothelium
    PureStem™ endothelial progenitor 30-SM2-1 (Embryonic Progenitor Cell)Endothelium
    PureStem™ endothelial progenitor RP1-MV2-18 (Embryonic Progenitor Cell)Endothelium
    PureStem™ progenitor E68 (Embryonic Progenitor Cell)
    PureStem™ progenitor T42 (Embryonic Progenitor Cell)
    PureStem™ endothelial progenitor 30-MV2-14 (Embryonic Progenitor Cell)Endothelium
    PureStem™ progenitor EN2 (Embryonic Progenitor Cell)
    PureStem™ progenitor T36 (Embryonic Progenitor Cell)
    PureStem™ progenitor U31 (Embryonic Progenitor Cell)

    See EDN1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for EDN1

    SOURCE GeneReport for Unigene clusters: Hs.511899 Hs.713645

    UniProtKB/Swiss-Prot: EDN1_HUMAN, P05305
    Tissue specificity: Expressed in lung, placental stem villi vessels and in cultured placental vascular smooth muscle
    cells

        SABiosciences Expression via Pathway-Focused PCR Arrays including EDN1 (see all 9): 
              G-Protein-Coupled Receptor Signaling PathwayFinder in human mouse rat
              Fibrosis in human mouse rat
              Hypoxia Signaling Pathway in human mouse rat
              Angiogenesis in human mouse rat
              Stress & Toxicity PathwayFinder in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for EDN1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat EDN1
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat EDN1
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat EDN1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for EDN1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for EDN1 gene from 3/10 species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves EDN11 endothelin 1 61.11(n)
    51.08(a)
      420854  XM_418943.3  XP_418943.2 
    lizard
    (Anolis carolinensis)
    Reptilia EDN16
    --
    48(a)
    1 ↔ 1
    GL343209.1(3436737-3444682)
    zebrafish
    (Danio rerio)
    Actinopterygii edn11 endothelin 1 55.84(n)
    52.14(a)
      58032  NM_131519.1  NP_571594.1 


    ENSEMBL Gene Tree for EDN1 (if available)
    TreeFam Gene Tree for EDN1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for EDN1 gene
    EDN22  EDN32  
    1 SIMAP similar gene for EDN1 using alignment to 2 protein entries:     EDN1_HUMAN (see all proteins):
    EDN3

    EDN1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/206 NCBI SNPs in EDN1 are shown (see all 206    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs53701,2
    C,F,A,H,other12227880(+) GGCAAG/TCCCTC 4 K N mis1 ese339Minor allele frequency- T:0.23MN EA NS NA WA EU 11665
    rs737227591,2
    C,F,--12220226(+) CCTCTG/CCTCTC 2 -- us2k12Minor allele frequency- C:0.50WA CSA 4
    rs37568641,2
    C,--12220240(-) AAAGCC/TGACCT 2 -- us2k10--------
    rs104786871,2
    C--12220666(+) AAAAAG/TGTTTC 2 -- us2k1 trp31Minor allele frequency- T:0.01NS 150
    rs104786881,2
    C,F--12220732(+) CCATCC/TCCAGA 2 -- us2k11Minor allele frequency- T:0.01NS 164
    rs18007841,2
    C,F,A,H,--12220822(+) TCCCAT/AAGGTC 2 -- us2k13Minor allele frequency- A:0.04NS WA NA 404
    rs18007851,2
    C,F,A,H,--12220824(+) CCATAG/AGTCTT 2 -- us2k19Minor allele frequency- A:0.04NS WA NA 880
    rs104786921,2
    C,F,H,--12221021(+) TTAGAT/CAGACA 2 -- us2k110Minor allele frequency- C:0.01NS EA NA WA 1016
    rs728300191,2
    --12221527(+) ACTTAC/TCGGGG 2 -- us2k10--------
    rs104786981,2
    C,F,--12222807(+) ATTATT/GATTCC 2 -- int13Minor allele frequency- G:0.05NS NA EA 416

    HapMap Linkage Disequilibrium report for EDN1 (12290529 - 12297427 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for EDN1: --
    Human Gene Mutation Database (HGMD): EDN1

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing EDN1
    DNA2.0 Custom Variant and Variant Library Synthesis for EDN1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    EDN1 for disorders           About GeneDecksing

    OMIM gene information: 131240    OMIM disorders: --

    20/308 diseases for EDN1 (see all 308):    About MalaCards
    high density lipoprotein cholesterol level qtl 7    twin-to-twin transfusion syndrome    low tension glaucoma    open-angle glaucoma
    cor pulmonale    twin twin transfusion syndrome    spinal cord injury    high blood pressure
    low renin hypertension    disseminated intravascular coagulation    primary open angle glaucoma    sudden infant death syndrome
    end stage renal failure    atrioventricular septal defect    homocysteine plasma level    doxorubicin induced cardiomyopathy
    complex regional pain syndrome    cleft lip/palate    proliferative diabetic retinopathy    focal segmental glomerulosclerosis

    12 diseases from the University of Copenhagen DISEASES database for EDN1:
    Hypertension     Heart disease     Atherosclerosis     Kidney failure
    Portal hypertension     Diabetes mellitus     Cerebrovascular accident     Systemic scleroderma
    Glaucoma     Liver cirrhosis     Proteinuria     Asthma

    10/97 Novoseek disease relationships for EDN1 gene (see all 97)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    hypertension pulmonary 79 355 8594905 (6), 16864942 (4), 10625089 (4), 19632577 (4) (see all 99)
    vasospasm 72.6 99 9254095 (6), 12910400 (4), 11053063 (3), 14623768 (3) (see all 58)
    hypertension arterial 68.8 71 11675821 (3), 12628956 (2), 19632577 (2), 18925520 (2) (see all 47)
    atherosclerosis 66.7 235 11755940 (4), 9647335 (4), 15320823 (4), 18673159 (4) (see all 99)
    essential hypertension 66.7 149 9283062 (6), 10522417 (4), 12425201 (3), 19644593 (3) (see all 71)
    heart failure 65.1 290 8176102 (6), 9861298 (5), 16076689 (5), 8606275 (4) (see all 99)
    pulmonary hypertension secondary 64.1 13 10194659 (2), 18211765 (1), 8594905 (1), 10444023 (1) (see all 11)
    cardiovascular diseases 62.8 117 17617392 (2), 20217138 (2), 19057845 (2), 11078363 (2) (see all 80)
    cerebral vasospasm 61.3 47 10713190 (4), 11340231 (3), 10763512 (3), 15104415 (2) (see all 27)
    preeclampsia 60.7 244 19730395 (6), 11167202 (5), 12193142 (5), 17261879 (5) (see all 84)

    Genetic Association Database (GAD): EDN1
    Human Genome Epidemiology (HuGE) Navigator: EDN1 (137 documents)

    Export disorders for EDN1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for EDN1 gene, integrated from 9 sources (see all 3937):
    (articles sorted by number of sources associating them with EDN1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Evaluation of the Lys198Asn and -134delA genetic polymorphisms of the endothelin-1 gene. (PubMed id 15198485)1, 4, 9 Tanaka C....Miyata T. (2004)
    2. [Correlation between polymorphism of TaqI of ET-1 gene and cirrhotic portal hypertension] (PubMed id 12887757)1, 4, 9 Lin J.S....Xiong P. (2003)
    3. Genes encoding endothelin-converting enzyme-1 and endothelin-1 interact to influence blood pressure in women: the EVA study. (PubMed id 15126915)1, 4, 9 Funalot B....Ducimetiere P. (2004)
    4. Association between glaucoma and gene polymorphism of endothelin type A receptor. (PubMed id 15988412)1, 4, 9 Ishikawa K....Mashima Y. (2005)
    5. [Relationship of endothelin-1 (ET-1) TaqI and tumor necrosis factor (TNF) a gene polymorphism with portal hypertension in liver cirrhosis.] (PubMed id 15623376)1, 4, 9 Cheng Y.Q....Xiong P. (2004)
    6. The double heterozygote of two endothelin-1 gene polymorphisms (G8002A and -3A/-4A) is related to big endothelin levels in chronic heart failure. (PubMed id 12565798)1, 4, 9 Vasku A....Vacha J. (2002)
    7. Association between the endothelin-1 gene Lys198Asn polymorphism blood pressure and plasma endothelin-1 levels in normal and pre-eclamptic pregnancy. (PubMed id 11593097)1, 4, 9 Barden A.E....Van Bockxmeer F.M. (2001)
    8. Gender-specific association between preproendothelin-1 genotype and reduction of systolic blood pressure during antihypertensive treatment--results from the Swedish Irbesartan Left Ventricular Hypertrophy Investigation versus Atenolol (SILVHIA). (PubMed id 15188945)1, 4, 9 Hallberg P....Melhus H. (2004)
    9. Endothelin-1 gene and progression of blood pressure and left ventricular mass: longitudinal findings in youth. (PubMed id 15505112)1, 4, 9 Dong Y....Snieder H. (2004)
    10. Endothelin-1 gene polymorphism in patients with malignant arrhythmias. (PubMed id 15838369)1, 4, 9 Kozak M....Vacha J. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 1906 HGNC: 3176 AceView: EDN1 Ensembl:ENSG00000078401 euGenes: HUgn1906
    ECgene: EDN1 Kegg: 1906 H-InvDB: EDN1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for EDN1 Pharmacogenomics, SNPs, Pathways
    NIEHS-SNPshttp://egp.gs.washington.edu/data/edn1/
    R&D Systems' cytokine source book: Endothelin-1http://www.rndsystems.com/molecule_detail.aspx?m=1364
    Wikipedia http://en.wikipedia.org/wiki/Endothelin

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for EDN1 gene:
    Search GeneIP for patents involving EDN1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     Browse Kits and Assays available from EMD Millipore
     EMD Millipore Mono- and Polyclonal Antibodies for the study of EDN1
     Browse Purified and Recombinant Proteins at EMD Millipore
     Browse for Gene Knock-down Tools from EMD Millipore
     Browse Small Molecules at EMD Millipore
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for EDN1 (Endothelin-1)   Browse Cell Culture Products  
     ELISAs for EDN1 (Endothelin-1)   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Multiplex/Array Assay Kits/Reagents for EDN1 (Endothelin-1)  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for EDN1   OriGene shRNA RFP for EDN1  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for EDN1   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for EDN1  
     OriGene Protein Over-expression Lysate for EDN1   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for EDN1   OriGene 3'-UTR Clone for EDN1  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for EDN1   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for EDN1  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for EDN1   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for EDN1   OriGene Custom Protein Services for EDN1  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat EDN1
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing EDN1
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat EDN1
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat EDN1
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat EDN1
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat EDN1
     GenScript Custom Purified and Recombinant Proteins Services for EDN1 GenScript cDNA clones with any tag delivered in your preferred vector for EDN1
     GenScript Custom Assay Services for EDN1 GenScript Custom Superior Antibodies Services for EDN1
     GenScript Custom overexpressing Cell Line Services for EDN1 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in EDN1 promoter
     Search Chromatin IP Primers for EDN1
     RT2 qPCR Primer Assay in human, mouse, rat EDN1
     GNC Network for EDN1
     SABiosciences PCR Arrays including human, mouse, rat EDN1
     Tocris compounds for EDN1
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Assays/Drugs/Proteins for EDN1
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     EDN1 antibodies
     EDN1 proteins
     EDN1 lysates
     Search for Antibodies for EDN1 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for EDN1
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Recombinant Protein for EDN1




     EDN1 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for EDN1
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for EDN1
     SwitchGear 3'UTR luciferase reporter plasmids for EDN1
     SwitchGear Promoter luciferase reporter plasmids for EDN1
     ThermoFisher Antibody for EDN1
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat EDN1
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      EDN1 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4