S1PR5 Gene
protein-coding GIFtS: 56
GC19M010485
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sphingosine-1-phosphate receptor 5 (Previous names: endothelial differentiation, sphingolipid G-protein-coupled receptor, 8 ) Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: EDG8)
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Aliases & Descriptions for S1PR5
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
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| Aliases |
|---|
| EDG8 2, 3, 5 | | Edg-8 1, 2 | | S1P5 2, 3 | | SPPR-1 2 | | SPPR-2 2 |
| | | Descriptions |
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| Endothelial differentiation G-protein-coupled receptor 8 3 | | S1P receptor 5 3 | | S1P receptor Edg-8 3 | | Sphingosine 1-phosphate receptor Edg-8 2, 3 | endothelial differentiation, sphingolipid G-protein-coupled receptor, 8 1, 2 | | sphingosine 1-phosphate receptor 5 2 | | sphingosine-1-phosphate receptor 5 2 |
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| | Search outside databases for aliases for S1PR5 gene |
Summaries for S1PR5(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for S1PR5: The lysosphingolipid sphingosine 1-phosphate (S1P) regulates cell proliferation, apoptosis, motility, and neurite retraction. Its actions may be both intracellular as a second messenger and extracellular as a receptor ligand. S1P and the structurally related lysolipid mediator lysophosphatidic acid (LPA) signal cells through a set of G protein-coupled receptors known as EDG receptors. Some EDG receptors (e.g., EDG1; MIM 601974) are S1P receptors; others (e.g., EDG2; MIM 602282) are LPA receptors.[supplied by OMIM] UniProtKB/Swiss-Prot: S1PR5_HUMAN, Q9H228Function: Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P is a bioactive lysophospholipid that elicits diverse physiological effect on most types of cells and tissues. Is coupled to both the G(i/0)alpha and G(12) subclass of heteromeric G-proteins (By similarity). May play a regulatory role in the transformation of radial glial cells into astrocytes and may affect proliferative activity of these cellsGene Wiki entry for S1PR5 (EDG8) |
Genomic Location for S1PR5
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19p13.2 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.2S1PR5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19M010485:
(about GC identifiers)
Start:
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10,484,622 bp from pter |
End:
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10,489,127 bp from pter |
Size:
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4,506 bases |
Orientation:
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minus strand |
RefSeq DNA sequence:- NC_000019.8 NT_011295.10
| Proteins for S1PR5
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: S1PR5_HUMAN, Q9H228 (See
protein sequence)Recommended Name: Sphingosine 1-phosphate receptor 5 Size: 398 amino acids; 41775 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Developmental stage: At 24 weeks of gestation, fragments of radial glial fibers are positive within the cortical plate and subplate of allocortical areas. These positive fragments often appear enlarged as varicosities and some of them terminate at blood vessels. Between 28 and 30 weeks of gestation, all iso- and allocortical areas contain immunolabelled radial glial fibers revealing curvature next to sulci. After 32 weeks of gestation, radial glial fibers gradually disappear; instead positive transitional stages between radial glia and astrocytes were found
Secondary accessions: Q6NW11Alternative splicing: 2 isoforms: Q9H228-1 Q9H228-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_110387.1
ENSEMBL proteins: ENSP00000352045 ENSP00000328472
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005886 | plasma membrane |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- | About this table
Antibodies for S1PR5: Assays for S1PR5: | Protein
Domains/ Families for S1PR5(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9H228
ProtoNet protein and cluster: Q9H228 2 Blocks protein families: IPB004061 Sphingosine 1-phosphate receptor family signature IPB005386 EDG-8 sphingosine 1-phosphate receptor signature
UniProtKB/Swiss-Prot: S1PR5_HUMAN, Q9H228Similarity: Belongs to the G-protein coupled receptor 1 family | Gene Function for S1PR5
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (S1PR5) | |  | Millipore RNAi Products for the Analysis of S1PR5 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (S1PR5) |                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_030760
Applied Biosystems Silencer® siRNAs for S1PR5
Sigma-Aldrich siRNA and siRNA Panels for S1PR5  Sigma-Aldrich shRNA Panels and shRNA for S1PR5  Explore Sigma-Aldrich super-pooled esiRNAs 
| Clones: |  | Invitrogen Clones for S1PR5 | |  | Millipore Clones for the Expression of S1PR5 |               OriGene GFP tagged cDNA clone in CMV expression vector: NM_030760                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_030760                                  untagged cDNA clone in CMV expression vector: NM_030760 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: BC034703
UniProtKB/Swiss-Prot: S1PR5_HUMAN, Q9H228Function: Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P is a bioactive lysophospholipid that elicits diverse physiological effect on most types of cells and tissues. Is coupled to both the G(i/0)alpha and G(12) subclass of heteromeric G-proteins (By similarity). May play a regulatory role in the transformation of radial glial cells into astrocytes and may affect proliferative activity of these cells1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for S1pr5):
3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001619 | lysosphingolipid and lysophosphatidic acid receptor activity |
IEA | -- | | GO:0004872 | receptor activity |
IEA | -- | | GO:0004930 | G-protein coupled receptor activity |
IEA | -- | About this table | Pathways & Interactions for S1PR5
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for S1PR5 (Your Favorite Gene powered by Ingenuity) 
5/16 Interacting proteins for S1PR5 (ENSP000003284723) via UniProtKB, MINT, and/or STRING (see all 16
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007165 | signal transduction |
IEA | -- | | GO:0007186 | G-protein coupled receptor protein signaling pathway |
IEA | -- | About this table
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Drugs & Compounds for S1PR5(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
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Compounds for S1PR5 available from Tocris Bioscience About this table
1 Novoseek chemical compound relationship for S1PR5 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| sphingosine |
75.81 |
7 |
19211033 (2) |
About this table
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Transcripts for S1PR5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (S1PR5) | |  | Millipore RNAi Products for the Analysis of S1PR5 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (S1PR5) |                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_030760
Sigma-Aldrich siRNA and siRNA Panels for S1PR5  Sigma-Aldrich shRNA Panels and shRNA for S1PR5  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_030760 REFSEQ mRNAs for S1PR5 gene: NM_030760.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_030760               OriGene GFP tagged cDNA clone in CMV expression vector: NM_030760                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_030760                                  untagged cDNA clone in CMV expression vector: NM_030760  Additional cDNA sequence: AF088014.1 AF331840.1 AF331841.1 AF331842.1 AK074661.1 AK094880.1 BC034703.1 BC067781.1 CR619597.1 7 DOTS entries: DT.101968559 DT.405571 DT.97839596 DT.100022816 DT.97839597 DT.121453900 DT.100728241 24/49 AceView cDNA sequences (see all 49
):BE646254 AF331841 BX282038 NM_030760 BF446252 CR619597 BX349015 AF331842 AF088014 CB049904 AI420856 CA432481 N63601 AI439969 AK094880 BX391791 AI814092 BX339823 N47089 AI823789 AK074661 BU620561 BX339822 AF331840 Unigene Cluster for S1PR5: Sphingosine-1-phosphate receptor 5 Hs.501561 [show with all ESTs]Unigene Representative Sequence: AF331840
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for S1PR5
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | ^ | 3a | · | 3b | · | 3c | |
| SP1: | |   | - |   | - |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for S1PR5
2 Ensembl transcripts including schematic representations: ENST00000359134
ENST00000333430
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Expression for S1PR5
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| S1PR5 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for S1PR5
1 / 2 7 probe-sets matching S1PR5 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGAGGTTGAA
SOURCE GeneReport for Unigene cluster: Hs.501561 UniProtKB/Swiss-Prot: S1PR5_HUMAN, Q9H228Tissue specificity: Widely expressed in the brain, most prominently in the corpus callosum, which is predominantly white matter. Detected in spleen, peripheral blood leukocytes, placenta, lung, aorta, and fetal spleen. Low-level signal detected in many tissue extracts. Isoform 1 is predominently expressed in peripheral tissues, whereas isoform 2 is expressed in brain, spleen and peripheral blood leukocytes |
Orthologs for S1PR5
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
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Orthologs for S1PR5 gene from 4 species
About this table Species with no ortholog for S1PR5
ENSEMBL Gene Tree for S1PR5 | Paralogs for S1PR5(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for S1PR5 gene
- S1PR32 S1PR12 S1PR22
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SNPs/Variants for S1PR5(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
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HapMap Linkage Disequilibrium images for S1PR5 (up to first 250kb)
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Disorders & Mutations for S1PR5
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 605146
UniProtKB/Swiss-Prot: S1PR5_HUMAN, Q9H228
Overexpressed in leukemic large granular lymphocyte (LGL). LGL is a lymphopropliferative disorder often associated with autoimmune disease |
Medical News for S1PR5(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for S1PR5 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/22 PubMed articles for S1PR5 gene (see all 22
):- Characterization of the human and mouse sphingosine 1-phosphate receptor, S1P5 (Edg-8): structure-activity relationship of sphingosine1-phosphate receptors. (PubMed id 11705398)1, 3, 4 Im D.-S.... Lynch K.R. (2001)
- Evidence for the presence of the sphingosine-1-phosphate receptor Edg-8 in human radial glial fibers. (PubMed id 15530552)1, 3, 4 Ulfig N. and Briese M. (2004)
- Characterization of a human sphingosine-1-phosphate receptor gene (S1P5) and its differential expression in LGL leukemia. (PubMed id 12427546)1, 3, 4 Kothapalli R.... Loughran T.P. Jr. (2002)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)3, 4 Grimwood J.... Lucas S.M. (2004)
- Identification of G protein-coupled receptor genes from the human genome sequence. (PubMed id 12044878)3, 4 Takeda S.... Mitaku S. (2002)
- Comparative analysis of human and rat S1P(5) (edg8): differential expression profiles and sensitivities to antagonists. (PubMed id 12234605)3, 4 Niedernberg A.... Kostenis E. (2002)
- Characterization of a novel sphingosine 1-phosphate receptor, Edg-8. (PubMed id 10799507)2, 3 Im D.S....Lynch K.R. (2000)
- The sphingosine 1-phosphate receptor 5 and sphingosine kinases 1 and 2 are localised in centrosomes: possible role in regulating cell division. (PubMed id 19211033)1, 3 Gillies L....Pyne S. (2009)
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Search for S1PR5
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing S1PR5
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing S1PR5
(According to HUGE)
About This Section
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Specialized Databases showing S1PR5(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| About This Section
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| Services for S1PR5(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for S1PR5:

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| | Recombinant Proteins (EDG8) | | Antibodies (EDG8) |
| | | Tocris compounds for S1PR5 |
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
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