S1PR4 Gene
protein-coding GIFtS: 53
GC19P003130
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sphingosine-1-phosphate receptor 4 (Previous names: endothelial differentiation, G-protein-coupled receptor 6, endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 6 ) Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: EDG6)
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Aliases & Descriptions for S1PR4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
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| Aliases |
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| EDG6 2, 3, 5 | | LPC1 2 | | S1P4 2, 3, 5 | | SLP4 2 |
| | | Descriptions |
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| Endothelial differentiation G-protein coupled receptor 6 3 | | S1P receptor 4 3 | | S1P receptor Edg-6 3 | | Sphingosine 1-phosphate receptor 4 2 | | Sphingosine 1-phosphate receptor Edg-6 2, 3 | | endothelial differentiation, G protein coupled receptor 6 2 | | endothelial differentiation, G-protein-coupled receptor 6 1, 2 | endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 6 1, 2 | | sphingosine-1-phosphate receptor 4 2 |
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| | Search outside databases for aliases for S1PR4 gene |
Summaries for S1PR4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for S1PR4: This gene is a member of the endothelial differentiation, G-protein-coupled (EDG)) receptor gene family. EDG receptors bind lysophospholipids or lysosphingolipids as ligands, and are involved in cell signalling in many different cell types. This EDG receptor gene is intronless and is specifically expressed in the lymphoid tissue. [provided by RefSeq] UniProtKB/Swiss-Prot: S1PR4_HUMAN, O95977Function: Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P is a bioactive lysophospholipid that elicits diverse physiological effect on most types of cells and tissues. May be involved in cell migration processes that are specific for lymphocytesGene Wiki entry for S1PR4 (EDG6) |
Genomic Location for S1PR4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19p13.3 Ensembl cytogenetic band: 19p13.3 HGNC cytogenetic band: 19p13.3S1PR4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19P003130:
(about GC identifiers)
Start:
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3,129,766 bp from pter |
End:
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3,131,330 bp from pter |
Size:
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1,565 bases |
Orientation:
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plus strand |
RefSeq DNA sequence:- NC_000019.8 NT_011255.14
| Proteins for S1PR4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: S1PR4_HUMAN, O95977 (See
protein sequence)Recommended Name: Sphingosine 1-phosphate receptor 4 Size: 384 amino acids; 41623 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
PDB structures from and Proteopedia :2DCO (3D)
 REFSEQ proteins: NP_003766.1
ENSEMBL proteins: ENSP00000246115
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for S1PR4: Assays for S1PR4: | Protein
Domains/ Families for S1PR4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O95977
ProtoNet protein and cluster: O95977 2 Blocks protein families: IPB004061 Sphingosine 1-phosphate receptor family signature IPB004064 EDG-6 sphingosine 1-phosphate receptor signature
UniProtKB/Swiss-Prot: S1PR4_HUMAN, O95977Similarity: Belongs to the G-protein coupled receptor 1 family | Gene Function for S1PR4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (S1PR4) | |  | Millipore RNAi Products for the Analysis of S1PR4 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (S1PR4) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003775
Applied Biosystems Silencer® siRNAs for S1PR4
Sigma-Aldrich siRNA and siRNA Panels for S1PR4  Sigma-Aldrich shRNA Panels and shRNA for S1PR4  Explore Sigma-Aldrich super-pooled esiRNAs 
| Clones: |  | Invitrogen Clones for S1PR4 | |  | Millipore Clones for the Expression of S1PR4 |               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003775                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003775                                  untagged cDNA clones in CMV expression vector (see all 2): NM_003775 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003775
UniProtKB/Swiss-Prot: S1PR4_HUMAN, O95977Function: Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P is a bioactive lysophospholipid that elicits diverse physiological effect on most types of cells and tissues. May be involved in cell migration processes that are specific for lymphocytes2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for S1pr4):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for S1PR4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for S1PR4 (Your Favorite Gene powered by Ingenuity) 
5/21 Interacting proteins for S1PR4 (ENSP000002461153) via UniProtKB, MINT, and/or STRING (see all 21
)About this table
5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
): About this table
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Drugs & Compounds for S1PR4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
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Compounds for S1PR4 available from Tocris Bioscience About this table
1 Novoseek chemical compound relationship for S1PR4 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| lysophospholipid |
85.59 |
1 |
10753843 (1) |
About this table
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Transcripts for S1PR4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (S1PR4) | |  | Millipore RNAi Products for the Analysis of S1PR4 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (S1PR4) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003775
Sigma-Aldrich siRNA and siRNA Panels for S1PR4  Sigma-Aldrich shRNA Panels and shRNA for S1PR4  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003775 REFSEQ mRNAs for S1PR4 gene: NM_003775.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003775               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003775                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003775                                  untagged cDNA clones in CMV expression vector (see all 2): NM_003775  Additional cDNA sequence: AJ000479.1 BC014970.1 CR590635.1 CR608611.1 CR610253.1 1 DOTS entry: DT.75163397 24/49 AceView cDNA sequences (see all 49
):BC014970 CR590635 BI906435 AL560216 CA314158 BG744043 BI908610 CR610253 CR608611 AW451146 BI907726 AA353166 BG685195 NM_003775 CD370174 AJ000479 BI762628 BG397972 CB529025 BQ053747 BX119598 BI909157 AL560608 BI910894 Unigene Cluster for S1PR4: Sphingosine-1-phosphate receptor 4 Hs.662006 [show with all ESTs]Unigene Representative Sequence: NM_003775
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000246115
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Expression for S1PR4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| S1PR4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for S1PR4
1 / 2 3 probe-sets matching S1PR4 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CCCTGGCAAC
SOURCE GeneReport for Unigene cluster: Hs.662006 UniProtKB/Swiss-Prot: S1PR4_HUMAN, O95977Tissue specificity: Specifically expressed in fetal and adult lymphoid and hematopoietic tissue as well as in lung. Considerable level of expression in adult and fetal spleen as well as adult peripheral leukocytes and lung. Lower expression in adult thymus, lymph node, bone marrow, and appendix as well as in fetal liver, thymus, and lung |
Orthologs for S1PR4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
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Orthologs for S1PR4 gene from 5/7 species (see all 7
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About this table Species with no ortholog for S1PR4
ENSEMBL Gene Tree for S1PR4 | Paralogs for S1PR4(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for S1PR4 gene
- LPAR22 LPAR12 LPAR32
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SNPs/Variants for S1PR4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
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HapMap Linkage Disequilibrium images for S1PR4 (up to first 250kb)
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Disorders & Mutations for S1PR4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
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OMIM: 603751
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Medical News for S1PR4(Possibly Related Articles in
Doctor's Guide)
About This Section
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Publications for S1PR4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/23 PubMed articles for S1PR4 gene (see all 23
):- EDG6, a novel G protein-coupled receptor related to receptors for bioactive lysophospholipids, is specifically expressed in lymphoid tissue. (PubMed id 9790765)2, 3, 4 Graeler M.H.... Lipp M. (1998)
- Sphingosine-1-phosphate is a ligand for the G protein-coupled receptor EDG-6. (PubMed id 10753843)1, 3, 4 Van Brocklyn J.R....Spiegel S. (2000)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Edg-6 as a putative sphingosine 1-phosphate receptor coupling to Ca(2+) signaling pathway. (PubMed id 10679247)3, 4 Yamazaki Y.... Ohta H. (2000)
- A single amino acid determines preference between phospholipids and reveals length restriction for activation of the S1P4 receptor. (PubMed id 15298705)1, 3 Holdsworth G....Parrill A.L. (2004)
- Sphingosine 1-phosphate induces chemotaxis of immature and modulates cytokine-release in mature human dendritic cells for emergence of Th2 immune responses. (PubMed id 11919175)1, 3 Idzko M....Norgauer J. (2002)
- FOXO1 regulates L-Selectin and a network of human T cell homing molecules downstream of phosphatidylinositol 3-kinase. (PubMed id 18713968)3 Fabre S....Bismuth G. (2008)
- Peptide design and structural characterization of a GPCR loop mimetic. (PubMed id 17443712)4 Pham T.C....Parrill A.L. (2007)
- Sphingosine-1-phosphate and its potentially paradoxical effects on critical parameters of cutaneous wound healing. (PubMed id 12648236)3 Vogler R....Kleuser B. (2003)
- The sphingosine 1-phosphate receptor S1P4 regulates cell shape and motility via coupling to Gi and G12/13. (PubMed id 12761884)3 Graler M.H....Lipp M. (2003)
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Search for S1PR4
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing S1PR4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing S1PR4
(According to HUGE)
About This Section
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Specialized Databases showing S1PR4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| Services for S1PR4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for S1PR4:

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| | Recombinant Proteins (EDG6) | | Antibodies (EDG6) |
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
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