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S1PR4 Gene

protein-coding   GIFtS: 53

GC19P003130
sphingosine-1-phosphate receptor 4
(Previous names: endothelial differentiation, G-protein-coupled receptor 6, endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 6 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: EDG6)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EDG6 2, 3, 5
LPC1 2
S1P4 2, 3, 5
SLP4 2
Descriptions
Endothelial differentiation G-protein coupled receptor 6 3
S1P receptor 4 3
S1P receptor Edg-6 3
Sphingosine 1-phosphate receptor 4 2
Sphingosine 1-phosphate receptor Edg-6 2, 3
endothelial differentiation, G protein coupled receptor 6 2
endothelial differentiation, G-protein-coupled receptor 6 1, 2
endothelial differentiation, lysophosphatidic acid
G-protein-coupled receptor, 6 1, 2
sphingosine-1-phosphate receptor 4 2
External Ids
HGNC: 31701
Entrez Gene: 86982
UniProtKB: O959773
Ensembl: ENSG000001259107
Search outside databases for aliases for S1PR4 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for S1PR4:
This gene is a member of the endothelial differentiation, G-protein-coupled (EDG)) receptor gene
family. EDG receptors bind lysophospholipids or lysosphingolipids as ligands, and are involved in
cell signalling in many different cell types. This EDG receptor gene is intronless and is
specifically expressed in the lymphoid tissue. [provided by RefSeq]

UniProtKB/Swiss-Prot: S1PR4_HUMAN, O95977
Function: Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P is a bioactive
lysophospholipid that elicits diverse physiological effect on most types of cells and tissues. May
be involved in cell migration processes that are specific for lymphocytes

Gene Wiki entry for S1PR4 (EDG6)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.3   Ensembl cytogenetic band:  19p13.3   HGNC cytogenetic band: 19p13.3

S1PR4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P003130:     (about GC identifiers)

Start:
3,129,766 bp from pter
End:
3,131,330 bp from pter
Size:
1,565 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000019.8  NT_011255.14  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: S1PR4_HUMAN, O95977 (See protein sequence)
Recommended Name: Sphingosine 1-phosphate receptor 4  
Size: 384 amino acids; 41623 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
PDB structures from and Proteopedia :
2DCO (3D)    

REFSEQ proteins: NP_003766.1  

ENSEMBL proteins: 
ENSP00000246115 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Millipore Purified and/or Recombinant S1PR4 Protein
Sigma-Aldrich Proteins for S1PR4  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (EDG6)
Human Recombinant Proteins from Abnova (S1PR4)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005886 plasma membrane IEA--
GO:0005887 integral to plasma membrane TAS9790765
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Antibodies for S1PR4: 
Invitrogen Antibodies for S1PR4
Millipore Mono- and Polyclonal Antibodies for the study of S1PR4
Sigma-Aldrich Antibodies for S1PR4
Browse R&D Systems for Antibodies
Antibodies from Abcam (EDG6), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (S1PR4)
Novus Biologicals Antibody for S1PR4

Assays for S1PR4: 
Invitrogen Assays for S1PR4
Millipore Kits and Assays for the Analysis of S1PR4
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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4 InterPro domains/families:
 IPR004061 S1P_rcpt
 IPR017452 GPCR_Rhodpsn_supfam
 IPR000276 7TM_GPCR_Rhodpsn
 IPR004064 EDG6_rcpt


   GeneDecks  S1PR4 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry O95977

ProtoNet protein and cluster: O95977

2 Blocks protein families:
IPB004061 Sphingosine 1-phosphate receptor family signature
IPB004064 EDG-6 sphingosine 1-phosphate receptor signature


UniProtKB/Swiss-Prot: S1PR4_HUMAN, O95977
Similarity: Belongs to the G-protein coupled receptor 1 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (S1PR4)
Millipore RNAi Products for the Analysis of S1PR4 Gene knock-down
Abnova Chimera RNAi Products for Gene knock-down (S1PR4)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003775

              Applied Biosystems Silencer® siRNAs for S1PR4

              Sigma-Aldrich siRNA and siRNA Panels for S1PR4  
                     Sigma-Aldrich shRNA Panels and shRNA for S1PR4  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for S1PR4
Millipore Clones for the Expression of S1PR4
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003775
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_003775
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_003775 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_003775

UniProtKB/Swiss-Prot: S1PR4_HUMAN, O95977
Function: Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P is a bioactive
lysophospholipid that elicits diverse physiological effect on most types of cells and tissues. May
be involved in cell migration processes that are specific for lymphocytes

2 MGI mutant phenotypes (inferred from 2 alleles(MGI details for S1pr4):

lethality-prenatal/perinatalnervous system

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0001619 lysosphingolipid and lysophosphatidic acid receptor activity IEA--
GO:0004872 receptor activity IEA--
GO:0004930 G-protein coupled receptor activity TAS10679247
GO:0008289 lipid binding TAS10679247
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Invitrogen iPath™ Online BioAtlas - Pathway for S1PR4 (Maps provided by GeneGo):
 G-protein families signaling pathway

   GeneDecks  S1PR4 for the pathways selected above  
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for  S1PR4  (Your Favorite Gene powered by Ingenuity) 
 Ceramide Signaling
 Human Embryonic Stem Cell Pluripotency

   GeneDecks  S1PR4 for the pathways selected above  
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1 Kegg Pathway  (Kegg details for S1PR4):
 hsa04080 Neuroactive ligand-receptor interaction

   GeneDecks  S1PR4 for the pathways selected above  
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5/21 Interacting proteins for S1PR4 (ENSP000002461153) via UniProtKB, MINT, and/or STRING (see all 21 )
InteractantInteraction Details
GeneCardExternal ID(s)
GNA12ENSP000002753643STRING (score=.96)
GNA13ENSP000002391383STRING (score=.96)
CDC42P2ENSP000003144583STRING (score=.933)
MBTPS1ENSP000003442233STRING (score=.915)
GNAI2ENSP000003129993STRING (score=.904)
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5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0006955 immune response TAS9790765
GO:0007165 signal transduction IEA--
GO:0007186 G-protein coupled receptor protein signaling pathway TAS9790765
GO:0007189 activation of adenylate cyclase activity by G-protein signaling pathway IEA--
GO:0007202 activation of phospholipase C activity TAS10679247
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Sigma-Aldrich Small Molecules for S1PR4:
Mixed Agonist/Antagonist Antagonist

Compounds for S1PR4 available from Tocris Bioscience
CompoundAction CAS number
Sphingosine-1-phosphateEndogenous agonist at S1P1-5[26993-30-6]
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1 Novoseek chemical compound relationship for S1PR4 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
lysophospholipid 85.59 1 10753843 (1)
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(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (S1PR4)
Millipore RNAi Products for the Analysis of S1PR4 Gene knock-down
Abnova Chimera RNAi Products for Gene knock-down (S1PR4)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003775

              Sigma-Aldrich siRNA and siRNA Panels for S1PR4  
                     Sigma-Aldrich shRNA Panels and shRNA for S1PR4  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_003775  

REFSEQ mRNAs for S1PR4 gene: 

NM_003775.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_003775  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003775
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_003775
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_003775 

Additional cDNA sequence: 

AJ000479.1 BC014970.1 CR590635.1 CR608611.1 CR610253.1 

1 DOTS entry:

DT.75163397 

24/49 AceView cDNA sequences (see all 49 ):

BC014970 CR590635 BI906435 AL560216 CA314158 BG744043 BI908610 CR610253 
CR608611 AW451146 BI907726 AA353166 BG685195 NM_003775 CD370174 AJ000479 
BI762628 BG397972 CB529025 BQ053747 BX119598 BI909157 AL560608 BI910894 

Unigene Cluster for S1PR4:

Sphingosine-1-phosphate receptor 4
Hs.662006  [show with all ESTs]
Unigene Representative Sequence: NM_003775


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:
ENST00000246115  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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S1PR4 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for S1PR4

1 / 2

3 probe-sets matching S1PR4 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
33602_at2 U95-A 1 1.00 1.00 1.00 1.00 -- -- -- -- --

206437_at2 U133-A 1 1.00 1.00 -- -- -- -- -- -- --

206437_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  S1PR4 for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: CCCTGGCAAC

SOURCE GeneReport for Unigene cluster: Hs.662006

UniProtKB/Swiss-Prot: S1PR4_HUMAN, O95977
Tissue specificity: Specifically expressed in fetal and adult lymphoid and hematopoietic tissue as
well as in lung. Considerable level of expression in adult and fetal spleen as well as adult
peripheral leukocytes and lung. Lower expression in adult thymus, lymph node, bone marrow, and
appendix as well as in fetal liver, thymus, and lung

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for S1PR4 gene from 5/7 species (see all 7 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
S1PR41   -- sphingosine-1-phosphate receptor 4 87.43(n)
86.39(a)
612082  XM_849809.1  XP_854902.1 
chimpanzee
(Pan troglodytes)
S1PR41   -- sphingosine-1-phosphate receptor 4 99.65(n)
100(a)
455581  XM_512266.2  XP_512266.2 
cow
(Bos taurus)
S1PR41   -- sphingosine-1-phosphate receptor 4 85.5(n)
85.94(a)
539534  XM_587940.3  XP_587940.1 
rat
(Rattus norvegicus)
S1pr41   -- sphingosine-1-phosphate receptor 4 80.37(n)
83.55(a)
314649  XM_234930.3  XP_234930.1 
mouse
(Mus musculus)
S1pr41, 5 105
sphingosine-1-phosphate receptor 41, 5 81.17(n)1
83.29(a)1
136111  NM_010102.11  NP_034232.11 
 AA2544255  AJ0060745  (see all 10)
About this table        Species with no ortholog for S1PR4

ENSEMBL Gene Tree for S1PR4
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
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Paralogs for S1PR4 gene
LPAR22  LPAR12  LPAR32  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/77 NCBI SNPs in S1PR4 are shown (see all 77 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 36)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 19 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs3116291,2
A,C,F,H3131803(+) CTGACG/AACTGC 1 -- ng315Minor allele frequency- A:0.31MN EU EA 1960
rs3116301,2
A,C,F,H3131770(+) TTGATT/GGTACA 1 -- ng3113Minor allele frequency- G:0.32EU EA WA 2760
rs37869441,2
C,F,H3129372(-) GCGCTC/TAGCAC 1 -- ng518Minor allele frequency- T:0.04EU EA WA 840
rs37460711,2
C,F,H3131827(-) CTCCAC/GTGGAG 1 -- ng315Minor allele frequency- G:0.22EA EU WA 1892
--
rs5678061,2
A,C3128279(-) CTGGCA/GTCTGA 1 -- ng510--------
--
rs3116311,2
A,C3131471(+) TGGAGA/TGTGTG 1 -- ng310--------
rs3116321,2
A,C3131369(+) GCATGC/TGTGGG 1 -- ng310--------
--
rs72507171,2
A,C3128815(+) AACGCA/CTCGGG 1 -- ng510--------
--
rs37460721,2
F,H3130884(-) GCGAGC/AGGGAG 1 L/R mis1 ese35Minor allele frequency- A:0.02EA EU WA 1890
--
rs104046041,2
A3127952(+) GCCTCA/GCCTCC 1 -- ng510--------
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HapMap Linkage Disequilibrium images for S1PR4 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 603751

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/23 PubMed articles for S1PR4 gene (see all 23 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 8698 HGNC: 3170 AceView: EDG6 Ensembl:ENSG00000125910 euGenes: HUgn8698
ECgene: S1PR4 H-InvDB: S1PR4
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
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  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for S1PR4:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Lentivirus-delivered shRNAs for S1PR4 Small molecules for S1PR4
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 Recombinant Proteins
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 Search OriGene for S1PR4
 Tocris compounds for S1PR4




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for S1PR4

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