S1PR3 Gene
protein-coding GIFtS: 49
GC09P090797
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sphingosine-1-phosphate receptor 3 (Previous names: endothelial differentiation, sphingolipid G-protein-coupled receptor, 3 ) Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: EDG3)
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Aliases & Descriptions for S1PR3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
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| Aliases |
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| EDG-3 1, 2 | | EDG3 2, 3, 5 | | FLJ37523 2 | | FLJ93220 2 | | LPB3 2 | | MGC71696 2 | | OTTHUMP00000021612 2 | | S1P3 2, 3 |
| | | Descriptions |
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| Endothelial differentiation G-protein coupled receptor 3 3 | G protein-coupled receptor, endothelial differentiation gene-3 2 | | S1P receptor 3 3 | | S1P receptor EDG3 2 | | S1P receptor Edg-3 3 | | Sphingosine 1-phosphate receptor Edg-3 3 | endothelial differentiation, sphingolipid G-protein-coupled receptor, 3 1, 2 | | sphingosine 1-phosphate receptor 3 2 | | sphingosine-1-phosphate receptor 3 2 |
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| | Search outside databases for aliases for S1PR3 gene |
Summaries for S1PR3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for S1PR3: This gene encodes a member of the EDG family of receptors, which are G protein-coupled receptors. This protein has been identified as a functional receptor for sphingosine 1-phosphate and likely contributes to the regulation of angiogenesis and vascular endothelial cell function. [provided by RefSeq] UniProtKB/Swiss-Prot: S1PR3_HUMAN, Q99500Function: Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P is a bioactive lysophospholipid that elicits diverse physiological effect on most types of cells and tissues. When expressed in rat HTC4 hepatoma cells, is capable of mediating S1P-induced cell proliferation and suppression of apoptosisGene Wiki entry for S1PR3 (EDG3) |
Genomic Location for S1PR3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9q22.1-q22.2 Ensembl cytogenetic band: 9q22.1 HGNC cytogenetic band: 9q22.1-q22.2S1PR3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09P090797:
(about GC identifiers)
Start:
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90,796,182 bp from pter |
End:
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90,809,745 bp from pter |
Size:
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13,564 bases |
Orientation:
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plus strand |
| Proteins for S1PR3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: S1PR3_HUMAN, Q99500 (See
protein sequence)Recommended Name: Sphingosine 1-phosphate receptor 3 Size: 378 amino acids; 42250 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: Q5SQD8 Q7Z5I2Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005217.2
ENSEMBL proteins: ENSP00000350878 ENSP00000365006
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for S1PR3: Assays for S1PR3: | Protein
Domains/ Families for S1PR3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q99500
ProtoNet protein and cluster: Q99500 2 Blocks protein families: IPB004061 Sphingosine 1-phosphate receptor family signature IPB004062 EDG-3 sphingosine 1-phosphate receptor signature
UniProtKB/Swiss-Prot: S1PR3_HUMAN, Q99500Similarity: Belongs to the G-protein coupled receptor 1 family | Gene Function for S1PR3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005226
Applied Biosystems Silencer® siRNAs for S1PR3
Sigma-Aldrich siRNA and siRNA Panels for S1PR3  Sigma-Aldrich shRNA Panels and shRNA for S1PR3  Explore Sigma-Aldrich super-pooled esiRNAs 
| Clones: |  | Invitrogen Clones for S1PR3 | |  | Millipore Clones for the Expression of S1PR3 |               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005226                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005226                                  untagged cDNA clone in CMV expression vector: NM_005226 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005226
UniProtKB/Swiss-Prot: S1PR3_HUMAN, Q99500Function: Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P is a bioactive lysophospholipid that elicits diverse physiological effect on most types of cells and tissues. When expressed in rat HTC4 hepatoma cells, is capable of mediating S1P-induced cell proliferation and suppression of apoptosis13 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for S1pr3):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for S1PR3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for S1PR3 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for S1PR3 
5/30 Interacting proteins for S1PR3 (ENSP000003508783) via UniProtKB, MINT, and/or STRING (see all 30
)About this table
5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
): About this table
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Drugs & Compounds for S1PR3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
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Compounds for S1PR3 available from Tocris Bioscience About this table
9 Novoseek chemical compound relationships for S1PR3 gene
About this table
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Transcripts for S1PR3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005226
Sigma-Aldrich siRNA and siRNA Panels for S1PR3  Sigma-Aldrich shRNA Panels and shRNA for S1PR3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005226 REFSEQ mRNAs for S1PR3 gene: NM_005226.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005226               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005226                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005226                                  untagged cDNA clone in CMV expression vector: NM_005226  24/122 AceView cDNA sequences (see all 122
):CK905851 BM997301 AA375607 BQ668511 AI874145 AL832194 AI658766 BC060827 AI473541 AI141395 AK130650 CA447674 BX090228 AA234027 AA424364 AW137598 BF589582 BF475629 BM705261 CA427601 AI400436 BM994343 AL536342 BM729144
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000358157
ENST00000375846
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Expression for S1PR3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| S1PR3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for S1PR3
1 / 2 6 probe-sets matching S1PR3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: -- UniProtKB/Swiss-Prot: S1PR3_HUMAN, Q99500Tissue specificity: Expressed in all tissues, but most abundantly in heart, placenta, kidney, and liver |
Orthologs for S1PR3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
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Orthologs for S1PR3 gene from 5/7 species (see all 7
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About this table Species with no ortholog for S1PR3
ENSEMBL Gene Tree for S1PR3 | Paralogs for S1PR3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for S1PR3 gene
- S1PR12 S1PR22 S1PR52
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SNPs/Variants for S1PR3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
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HapMap Linkage Disequilibrium images for S1PR3 (up to first 250kb)
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Disorders & Mutations for S1PR3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
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OMIM: 601965
6 Novoseek disease relationships for S1PR3 gene
About this table
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Medical News for S1PR3(Possibly Related Articles in
Doctor's Guide)
About This Section
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Publications for S1PR3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/94 PubMed articles for S1PR3 gene (see all 94
):- Identification of cDNAs encoding two G protein-coupled receptors for lysosphingolipids. (PubMed id 9409733)1, 2, 3, 4 An S....Goetzl E.J. (1997)
- Molecular cloning of the novel human G protein-coupled receptor (GPCR) gene mapped on chromosome 9. (PubMed id 8878560)1, 2, 3, 4 Yamaguchi F....Brenner S. (1996)
- Differential pharmacological properties and signal transduction of the sphingosine 1-phosphate receptors EDG-1, EDG-3, and EDG-5. (PubMed id 10383399)1, 3, 4 Ancellin N. and Hla T. (1999)
- Sphingosine 1-phosphate-induced cell proliferation, survival, and related signaling events mediated by G protein-coupled receptors Edg3 and Edg5. (PubMed id 10617617)1, 3, 4 An S.... Bleu T. (2000)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Evidence for Edg-3 receptor-mediated activation of I(K.ACh) by sphingosine-1-phosphate in human atrial cardiomyocytes. (PubMed id 10908314)3, 4 Himmel H.M.... Ravens U. (2000)
- Sphingosine 1-phosphate-induced cell rounding and neurite retraction are mediated by the G protein-coupled receptor H218. (PubMed id 9988698)1, 3 Van Brocklyn J.R....Spiegel S. (1999)
- Attenuation of vascular permeability by methylnaltrexone: role of mOP-R and S1P3 transactivation. (PubMed id 17395891)1, 3 Singleton P.A....Garcia J.G. (2007)
- Specific and overlapping sphingosine-1-phosphate receptor functions in human synoviocytes: impact of TNF-alpha. (PubMed id 18658144)1, 3 Zhao C....Bourgoin S.G. (2008)
- Sphingosine 1-phosphate stimulates proliferation and migration of human endothelial cells possibly through the lipid receptors, Edg-1 and Edg-3. (PubMed id 10794715)1, 3 Kimura T....Okajima F. (2000)
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Search for S1PR3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing S1PR3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing S1PR3
(According to HUGE)
About This Section
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Specialized Databases showing S1PR3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| Services for S1PR3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for S1PR3:

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| | Recombinant Proteins (EDG3) | | Antibodies (EDG3) |
| | | Tocris compounds for S1PR3 |
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
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