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S1PR3 Gene

protein-coding   GIFtS: 49

GC09P090797
sphingosine-1-phosphate receptor 3
(Previous names: endothelial differentiation, sphingolipid G-protein-coupled receptor, 3 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: EDG3)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
EDG-3 1, 2
EDG3 2, 3, 5
FLJ37523 2
FLJ93220 2
LPB3 2
MGC71696 2
OTTHUMP00000021612 2
S1P3 2, 3
Descriptions
Endothelial differentiation G-protein coupled receptor 3 3
G protein-coupled receptor, endothelial differentiation
gene-3 2
S1P receptor 3 3
S1P receptor EDG3 2
S1P receptor Edg-3 3
Sphingosine 1-phosphate receptor Edg-3 3
endothelial differentiation, sphingolipid G-protein-coupled
receptor, 3 1, 2
sphingosine 1-phosphate receptor 3 2
sphingosine-1-phosphate receptor 3 2
External Ids
HGNC: 31671
Entrez Gene: 19032
UniProtKB: Q995003
Ensembl: ENSG000002136947
Search outside databases for aliases for S1PR3 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for S1PR3:
This gene encodes a member of the EDG family of receptors, which are G protein-coupled receptors.
This protein has been identified as a functional receptor for sphingosine 1-phosphate and likely
contributes to the regulation of angiogenesis and vascular endothelial cell function. [provided by
RefSeq]

UniProtKB/Swiss-Prot: S1PR3_HUMAN, Q99500
Function: Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P is a bioactive
lysophospholipid that elicits diverse physiological effect on most types of cells and tissues.
When expressed in rat HTC4 hepatoma cells, is capable of mediating S1P-induced cell proliferation
and suppression of apoptosis

Gene Wiki entry for S1PR3 (EDG3)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q22.1-q22.2   Ensembl cytogenetic band:  9q22.1   HGNC cytogenetic band: 9q22.1-q22.2

S1PR3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P090797:     (about GC identifiers)

Start:
90,796,182 bp from pter
End:
90,809,745 bp from pter
Size:
13,564 bases
Orientation:
plus strand
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: S1PR3_HUMAN, Q99500 (See protein sequence)
Recommended Name: Sphingosine 1-phosphate receptor 3  
Size: 378 amino acids; 42250 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: Q5SQD8 Q7Z5I2

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_005217.2  

    ENSEMBL proteins: 
    ENSP00000350878 ENSP00000365006 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Millipore Purified and/or Recombinant S1PR3 Protein
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (EDG3)
    Human Recombinant Proteins from Abnova (S1PR3)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886 plasma membrane TAS9409733
    GO:0005887 integral to plasma membrane TAS9409733
    About this table

    Antibodies for S1PR3: 
    Invitrogen Antibodies for S1PR3
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for S1PR3
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (EDG3), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (S1PR3)
    Novus Biologicals Antibodies for S1PR3

    Assays for S1PR3: 
    Invitrogen Assays for S1PR3
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    4 InterPro domains/families:
     IPR004061 S1P_rcpt
     IPR017452 GPCR_Rhodpsn_supfam
     IPR004062 EDG3_rcpt
     IPR000276 7TM_GPCR_Rhodpsn


       GeneDecks  S1PR3 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q99500

    ProtoNet protein and cluster: Q99500

    2 Blocks protein families:
    IPB004061 Sphingosine 1-phosphate receptor family signature
    IPB004062 EDG-3 sphingosine 1-phosphate receptor signature


    UniProtKB/Swiss-Prot: S1PR3_HUMAN, Q99500
    Similarity: Belongs to the G-protein coupled receptor 1 family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (S1PR3)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (S1PR3)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005226

                  Applied Biosystems Silencer® siRNAs for S1PR3

                  Sigma-Aldrich siRNA and siRNA Panels for S1PR3  
                         Sigma-Aldrich shRNA Panels and shRNA for S1PR3  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for S1PR3
    Millipore Clones for the Expression of S1PR3
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_005226
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_005226
                                     untagged cDNA clone in CMV expression vector: NM_005226 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_005226

    UniProtKB/Swiss-Prot: S1PR3_HUMAN, Q99500
    Function: Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P is a bioactive
    lysophospholipid that elicits diverse physiological effect on most types of cells and tissues.
    When expressed in rat HTC4 hepatoma cells, is capable of mediating S1P-induced cell proliferation
    and suppression of apoptosis

    13 MGI mutant phenotypes (inferred from 3 alleles(MGI details for S1pr3):

    behavior/neurologicalcellularhearing/vestibular/earhomeostasis/metabolism
    immune systemlethality-prenatal/perinatallimbs/digits/tailnervous systemnormal
    reproductive systemrespiratory systemskin/coat/nails

    4 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001619 lysosphingolipid and lysophosphatidic acid receptor activity IEA--
    GO:0004872 receptor activity IEA--
    GO:0004930 G-protein coupled receptor activity TAS10555146
    GO:0008289 lipid binding TAS9409733
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    1 Invitrogen iPath™ Online BioAtlas - Pathway for S1PR3 (Maps provided by GeneGo):
     G-protein families signaling pathway

       GeneDecks  S1PR3 for the pathways selected above  
    About GeneDecksing

    2 Sigma-Aldrich "Your Favorite Gene" Pathways for  S1PR3  (Your Favorite Gene powered by Ingenuity) 
     Ceramide Signaling
     Human Embryonic Stem Cell Pluripotency

       GeneDecks  S1PR3 for the pathways selected above  
    About GeneDecksing

    1 Kegg Pathway  (Kegg details for S1PR3):
     hsa04080 Neuroactive ligand-receptor interaction

       GeneDecks  S1PR3 for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  S1PR3 


    5/30 Interacting proteins for S1PR3 (ENSP000003508783) via UniProtKB, MINT, and/or STRING (see all 30 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    AKT1ENSP000002702023STRING (score=.981)
    GNAQENSP000002865483STRING (score=.975)
    MBTPS1ENSP000003442233STRING (score=.966)
    GNA13ENSP000002391383STRING (score=.96)
    MAPK3ENSP000002630253STRING (score=.958)
    About this table

    5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001816 cytokine production IEA--
    GO:0006954 inflammatory response TAS8649355
    GO:0007165 signal transduction IEA--
    GO:0007186 G-protein coupled receptor protein signaling pathway TAS10617617
    GO:0007193 inhibition of adenylate cyclase activity by G-protein signaling IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Sigma-Aldrich Small Molecules for S1PR3:
    Mixed Agonist/Antagonist Antagonist

    Compounds for S1PR3 available from Tocris Bioscience
    CompoundAction CAS number
    Sphingosine-1-phosphateEndogenous agonist at S1P1-5[26993-30-6]
    About this table


    9 Novoseek chemical compound relationships for S1PR3 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    dhs-1-p 91.71 1 10626811 (1)
    sphingosylphosphorylcholine 88.98 4 10381367 (2), 9409733 (1)
    sphingosine 82.56 1 16636149 (1)
    lysophospholipid 81.97 1 10753843 (1)
    lipid 42.14 4 10794715 (2), 12775579 (1), 9928946 (1)
    phosphatidylinositol 26.40 1 17046831 (1)
    calcium 14.73 16 10220556 (6), 9928946 (3), 10383399 (2), 9878524 (2) (see all 5)
    cyclic amp 6.59 2 10381367 (1)
    tyrosine 0.00 2 18834877 (1), 11544274 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (S1PR3)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (S1PR3)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005226

                  Sigma-Aldrich siRNA and siRNA Panels for S1PR3  
                         Sigma-Aldrich shRNA Panels and shRNA for S1PR3  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_005226  

    REFSEQ mRNAs for S1PR3 gene: 

    NM_005226.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_005226  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_005226
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_005226
                                     untagged cDNA clone in CMV expression vector: NM_005226 

    24/122 AceView cDNA sequences (see all 122 ):

    CK905851 BM997301 AA375607 BQ668511 AI874145 AL832194 AI658766 BC060827 
    AI473541 AI141395 AK130650 CA447674 BX090228 AA234027 AA424364 AW137598 
    BF589582 BF475629 BM705261 CA427601 AI400436 BM994343 AL536342 BM729144 


    GeneLoc Exon Structure

    2 Ensembl transcripts including schematic representations:
    ENST00000358157  ENST00000375846  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    S1PR3 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for S1PR3

    1 / 2

    6 probe-sets matching S1PR3 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    80110_at2 U95-D 1 1.00 1.00 0.79 1.05 -- -- -- -- --
    46116_at2 U95-B 2 1.00 0.59 0.96 0.96 -- -- -- -- --

    231741_at2 U133-B 2 1.00 0.95 -- -- -- -- -- -- --

    228176_at2 U133-B 2 1.00 0.73 -- -- -- -- -- -- --

    231741_at2 U133Plus2 2 1.00 0.95 -- -- -- -- -- -- --

    228176_at2 U133Plus2 2 1.00 0.73 -- -- -- -- -- -- --
    GeneDecks  S1PR3 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: --

    UniProtKB/Swiss-Prot: S1PR3_HUMAN, Q99500
    Tissue specificity: Expressed in all tissues, but most abundantly in heart, placenta, kidney, and
    liver

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for S1PR3 gene from 5/7 species (see all 7 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    S1PR31   -- sphingosine-1-phosphate receptor 3 86.74(n)
    87.8(a)
    484199  XM_541315.2  XP_541315.2 
    chimpanzee
    (Pan troglodytes)
    S1PR31   -- sphingosine-1-phosphate receptor 3 99.74(n)
    99.74(a)
    464580  XM_520117.2  XP_520117.2 
    cow
    (Bos taurus)
    S1PR31   -- sphingosine-1-phosphate receptor 3 86.4(n)
    88(a)
    539123  XM_001252512.1  XP_001252513.1 
    rat
    (Rattus norvegicus)
    S1pr31   -- sphingosine-1-phosphate receptor 3 86.7(n)
    89.89(a)
    306792  XM_225216.4  XP_225216.2 
    mouse
    (Mus musculus)
    S1pr31, 5 135
    sphingosine-1-phosphate receptor 31, 5 85.55(n)1
    88.03(a)1
    136101  NM_010101.31  NP_034231.11 
     AA0347805  AB0281435  (see all 26)
    About this table        Species with no ortholog for S1PR3

    ENSEMBL Gene Tree for S1PR3
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for S1PR3 gene
    S1PR12  S1PR22  S1PR52  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/33 NCBI SNPs in S1PR3 are shown (see all 33 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 58)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 9 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs78535371,2
    A,C,F,H90807922(+) GAAGCA/GGACGG 1 -- ut317Minor allele frequency- G:0.13NA EU EA WA 542
    rs340753411,2
    C,F90806663(+) GCTGCG/AGACCG 1 Q/R mis15Minor allele frequency- A:0.02NA EU EA WA 482
    rs78654151,2
    H90807926(+) CAGACG/AGCTGG 1 -- ut314Minor allele frequency- A:0.00EU EA WA 396
    rs349623071,2
    C90806565(+) GTGACC/GATCGT 1 T/T syn11Minor allele frequency- G:0.01NA 76
    --
    rs65593331,2
    A,C,F,H90801401(+) tgcagC/Ggtccg 1 -- int17Minor allele frequency- G:0.28EU EA WA NA 560
    rs70384571,2
    A,C,F,H90802886(+) CCAGTT/CCCTGT 1 -- int115Minor allele frequency- C:0.15EU EA WA NA 1400
    rs78586261,2
    A,C,F,H90802459(+) CCAGCA/GATCTG 1 -- int18Minor allele frequency- G:0.48EU EA WA 836
    --
    rs78708881,2
    A,C,F90802703(+) CTCGCG/AGTCCC 1 -- int13Minor allele frequency- A:0.10NA 136
    --
    rs412873531,2
    --90808153(+) GTGACC/TATCAG 1 -- ut310--------
    --
    rs412873471,2
    --90806435(+) CTTCAC/TGCTGG 1 T/M mis10--------
    About this table

    HapMap Linkage Disequilibrium images for S1PR3 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 601965

    6 Novoseek disease relationships for S1PR3 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    inflammation 19.88 1 18305483 (1)
    glioblastoma 16.48 1 12175535 (1)
    breast cancer 1.63 1 10493533 (1)
    necrosis 0.00 1 18658144 (1)
    cancer 0.00 1 15466859 (1)
    tumors 0.00 1 18658144 (1)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/94 PubMed articles for S1PR3 gene (see all 94 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 1903 HGNC: 3167 AceView: EDG3 Ensembl:ENSG00000213694 euGenes: HUgn1903
    ECgene: S1PR3 H-InvDB: S1PR3
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for S1PR3:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



      Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
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     Predesigned and custom siRNAs for S1PR3 Antibodies for S1PR3
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for S1PR3 Small molecules for S1PR3
     "Your Favorite Gene" Pathwaysfeedback


      
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     Custom Service for Rabbit Pab from Full-length Protein
      
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     Search OriGene for S1PR3
     Tocris compounds for S1PR3




     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for S1PR3

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