LPAR1 Gene
protein-coding GIFtS : 59
GC09M112676
lysophosphatidic acid receptor 1 (Previous names: endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: EDG2 )
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Aliases & Descriptions for LPAR1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EDG2 2 , 3 , 5 GPR26 1 , 2 Gpcr26 1 , 2 LPA-1 3 LPA1 1 , 2 , 3 , 5 Mrec1.3 1 , 2 OTTHUMP00000021903 2 OTTHUMP00000021904 2 OTTHUMP00000021905 2 VZG1 2 , 5 edg-2 1 , 2 rec.1.3 1 , 2 vzg-1 1 , 2
Descriptions LPA receptor 1 3 Lysophosphatidic acid receptor Edg-2 3 endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2 1 , 2 lysophosphatidic acid receptor 1 2 ventricular zone gene 1 2
Search outside databases for aliases for LPAR1 gene
Summaries for LPAR1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for LPAR1 : The integral membrane protein encoded by this gene is a lysophosphatidic acid (LPA) receptor from agroup known as EDG receptors. These receptors are members of the G protein-coupled receptorsuperfamily. Utilized by LPA for cell signaling, EDG receptors mediate diverse biologic functions,including proliferation, platelet aggregation, smooth muscle contraction, inhibition ofneuroblastoma cell differentiation, chemotaxis, and tumor cell invasion. Two transcript variantsencoding the same protein have been identified for this gene [provided by RefSeq] UniProtKB/Swiss-Prot: LPAR1_HUMAN, Q92633 Function : Receptor for lysophosphatidic acid (LPA), a mediator of diverse cellular activities.Seems to be coupled to the G(i)/G(o), G(12)/G(13), and G(q) families of heteromeric G proteins
Gene Wiki entry for LPAR1 (EDG2)
Genomic Location for LPAR1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9q31.3 Ensembl cytogenetic band: 9q31.3 HGNC cytogenetic band: 9q LPAR1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09M112676:
(about GC identifiers )
Start:
112,675,365 bp from pter
End:
112,840,186 bp from pter
Size:
164,822 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000009.10 NT_008470.18 Proteins for LPAR1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
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Biochemical Assays by
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Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
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UniProtKB/Swiss-Prot: LPAR1_HUMAN, Q92633 (See
protein sequence )Recommended Name: Lysophosphatidic acid receptor 1 Size : 364 amino acids; 41109 Da
Subcellular location : Cell membrane; Multi-pass membrane protein
Secondary accessions : O00656 O00722 P78351
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001392.2 NP_476500.1 ENSEMBL proteins: ENSP00000363552 ENSP00000363553 ENSP00000351755 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for LPAR1: Assays for LPAR1:
Protein
Domains/ Families for LPAR1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q92633 ProtoNet protein and cluster: Q92633
2 Blocks protein families : IPB002277 Lysophosphatidic acid receptor (EDG2) signature IPB004065 Lysophosphatidic acid receptor family signature UniProtKB/Swiss-Prot: LPAR1_HUMAN, Q92633 Similarity : Belongs to the G-protein coupled receptor 1 family
Gene Function for LPAR1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_057159 Applied Biosystems Silencer ® siRNAs for LPAR1 Sigma-Aldrich siRNA and siRNA Panels for LPAR1 Sigma-Aldrich shRNA Panels and shRNA for LPAR1 Explore Sigma-Aldrich super-pooled esiRNAs Clones: Invitrogen Clones for LPAR1 Millipore Clones for the Expression of LPAR1
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001401                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001401                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001401  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001401 UniProtKB/Swiss-Prot: LPAR1_HUMAN, Q92633 Function : Receptor for lysophosphatidic acid (LPA), a mediator of diverse cellular activities.Seems to be coupled to the G(i)/G(o), G(12)/G(13), and G(q) families of heteromeric G proteins
9 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Lpar1) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0001619 lysosphingolipid and lysophosphatidic acid receptor activity
IEA -- GO:0004872 receptor activity
IEA -- GO:0004930 G-protein coupled receptor activity
TAS 8922387 GO:0030165 PDZ domain binding
IEA --
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Pathways & Interactions for LPAR1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for LPAR1 5/37 Interacting proteins for LPAR1 (ENSP00000363553 3 ) via UniProtKB, MINT, and/or STRING (see all 37
)About this table 5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
):
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Drugs & Compounds for LPAR1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for LPAR1 6 Novoseek chemical compound relationships for LPAR1 gene
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Transcripts for LPAR1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_057159 Sigma-Aldrich siRNA and siRNA Panels for LPAR1 Sigma-Aldrich shRNA Panels and shRNA for LPAR1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001401 NM_057159
REFSEQ mRNAs for LPAR1 gene (2 alternative transcripts): NM_001401.3 NM_057159.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001401 NM_057159
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001401                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001401                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001401  
Additional cDNA sequence: AK022808.1 AK290287.1 AK296374.1 AK298590.1 AK299279.1 AY322546.1 BC030615.2 BC036034.1 BC073167.1 U78192.1 U80811.1 Y09479.1
12 DOTS entries : DT.97769991 DT.91735433 DT.91757548 DT.92026247 DT.121173151 DT.95135082 DT.121173152 DT.121173154 DT.102836420 DT.121173114 DT.121173164 DT.91672717
24/151 AceView cDNA sequences (see all 151
):AI168217 F06566 CB132447 BQ183686 BE140638 BE464013 NM_057159 BC036034 CB216093 AW953091 BQ019924 BX114078 NM_001401 AK022808 BQ446451 AI272801 AI678309 AI674417 BQ028223 BU838473 AU120057 BC073167 T32740 AA150119
Unigene Cluster for LPAR1: Lysophosphatidic acid receptor 1 Hs.126667 [show with all ESTs ] Unigene Representative Sequence: BC036034 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for LPAR1 (see all 9
) ExUns: 1 ^ 2 ^ 3a · 3b · 3c · 3d · 3e ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b · 11c ^ 12 SP1 :                 -   -   -   -                   SP2 :               -   -   -   -   -         -           SP3 :                 -   -   -   -         -           SP4 :                               -           SP5 :   -   -   -   -   -   -   -   -   -   -   -         -          
About this scheme ECgene alternative splicing isoforms for LPAR1 3 Ensembl transcripts including schematic representations : ENST00000374430
ENST00000374431
ENST00000358883
Expression for LPAR1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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LPAR1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for LPAR1 1 / 2
9 probe-sets matching LPAR1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGTGGCAGTTSOURCE GeneReport for Unigene cluster: Hs.126667 UniProtKB/Swiss-Prot: LPAR1_HUMAN, Q92633 Tissue specificity : Expressed in many adult organs, including brain, heart, colon, small intestine,placenta, prostate, ovary, pancreas, testes, spleen, skeletal muscle, and kidney. Little or noexpression in liver, lung, thymus, or peripheral blood leukocytes
Orthologs for LPAR1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for LPAR1 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for LPAR1 ENSEMBL Gene Tree for LPAR1 Paralogs for LPAR1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for LPAR1 gene S1PR4 2 LPAR2 2 LPAR3 2
SNPs/Variants for LPAR1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for LPAR1 (up to first 250kb)
Disorders & Mutations for LPAR1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602282 10 Novoseek disease relationships for LPAR1 gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
ovarian cancer
47.40
6
18461672 (2), 19001604 (1), 19116446 (1), 11353786 (1) (see all 5 )
metastasis
28.74
7
18089805 (4), 11291053 (1), 10632375 (1), 17671192 (1)
cancer
27.41
16
19025891 (2), 15220934 (2), 14744855 (2), 9525886 (1) (see all 10 )
breast carcinoma
21.30
1
18089805 (1)
osteosarcoma
19.92
1
10961347 (1)
tumors
12.02
8
19001604 (2), 18089805 (2), 19025891 (1), 11353786 (1) (see all 6 )
colon cancer
8.39
2
15728708 (1), 12670925 (1)
breast cancer
7.30
3
10493533 (1), 18089805 (1), 16109476 (1)
gastric cancer
6.80
3
15530853 (1), 16353194 (1), 18701480 (1)
prostate cancer
2.27
4
16809448 (2), 19025891 (1), 17531530 (1)
About this table Human Gene Mutation Database : LPAR1 Human Genome Epidemiology Navigator: LPAR1 (2 documents)
Medical News for LPAR1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for LPAR1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/122 PubMed articles for LPAR1 gene (see all 122
): Molecular cloning of the human Edg2 protein and its identification as a functional cellular receptor for lysophosphatidic acid. (PubMed id 9070858) 1, 2, 3, 4 An S....Goetzl E.J. (1997) Ventricular zone gene-1 (vzg-1) encodes a lysophosphatidic acid receptor expressed in neurogenic regions of the developing cerebral cortex. (PubMed id 8922387) 1, 2, 3 Hecht J.H....Chun J. (1996) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Lysophosphatidic acid receptors. (PubMed id 11093753) 3, 4 Contos J.J.A.... Chun J. (2000) Lysophosphatidic acid: G-protein signalling and cellular responses. (PubMed id 9069262) 3, 4 Moolenaar W.H.... Zondag G.C.M. (1997) Integrin signalling regulates the nuclear localization and function of the lysophosphatidic acid receptor-1 (LPA1) in mammalian cells. (PubMed id 16716145) 1, 3 Waters C.M....Pyne N.J. (2006) Nm23-H1 suppresses metastasis by inhibiting expression of the lysophosphatidic acid receptor EDG2. (PubMed id 18089805) 1, 3 Horak C.E....Steeg P.S. (2007) Recombinant human G protein-coupled lysophosphatidic acid receptors mediate intracellular calcium mobilization. (PubMed id 9804623) 1, 3 An S....Goetzl E.J. (1998) Lysophosphatidic acid stimulates the proliferation and motility of malignant pleural mesothelioma cells through lysophosphatidic acid receptors, LPA1 and LPA2. (PubMed id 18754873) 1, 3 Yamada T....Sone S. (2008) Expression and function of lysophosphatidic acid LPA1 receptor in prostate cancer cells. (PubMed id 16809448) 1, 3 Guo R....Daaka Y. (2006)
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Genome Databases showing LPAR1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing LPAR1
(According to HUGE )
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Specialized Databases showing LPAR1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for LPAR1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for LPAR1:
Recombinant Proteins (EDG2 ) Antibodies (EDG2 )
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