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Aliases & Descriptions for EDF1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EDF-1 1 , 2 , 3 MBF1 2 , 3 MGC9058 2 OTTHUMP00000022616 2 OTTHUMP00000022617 2
Descriptions Multiprotein-bridging factor 1 3 endothelial differentiation-related factor 1 2 multiprotein bridging factor 1 2 multiprotein bridging factor-1 1 , 2
Search outside databases for aliases for EDF1 genePrevious GC identifers: GC09M130979 GC09M131446 GC09M133197 GC09M135113 GC09M137032
Summaries for EDF1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for EDF1 : This gene encodes a protein that may regulate endothelial cell differentiation. It has beenpostulated that the protein functions as a bridging molecule that interconnects regulatoryproteins and the basal transcriptional machinery, thereby modulating the transcription of genesinvolved in endothelial differentiation. This protein has also been found to act as atranscriptional coactivator by interconnecting the general transcription factor TATAelement-binding protein (TBP) and gene-specific activators. Two alternatively spliced transcriptswhich encode distinct proteins have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: EDF1_HUMAN, O60869 Function : Transcriptional coactivator stimulating NR5A1 and ligand-dependent NR1H3/LXRA and PPARGtranscriptional activities. Enhances the DNA-binding activity of ATF1, ATF2, CREB1 and NR5A1.Regulates nitric oxid synthase activity probably by sequestering calmodulin in the cytoplasm. Mayfunction in endothelial cells differentiation, hormone-induced cardiomyocytes hypertrophy andlipid metabolism
Gene Wiki entry for EDF1
Genomic Location for EDF1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the EDF1 gene Entrez Gene cytogenetic band: 9q34.3 Ensembl cytogenetic band: 9q34.3 HGNC cytogenetic band: 9q34.3 EDF1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09M138876:
(about GC identifiers )
Start:
138,876,392 bp from pter
End:
138,880,559 bp from pter
Size:
4,168 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000009.10 NT_024000.16 Proteins for EDF1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: EDF1_HUMAN, O60869 (See
protein sequence )Recommended Name: Endothelial differentiation-related factor 1 Size : 148 amino acids; 16369 Da
Subunit : Interacts with TBP and the transcription factor IID (TFIID) complex, NR5A2, NR1H3 andPPARG. Interaction with TBP is regulated by phosphorylation. Binds NR5A1, ATF1, FOS and JUN viatheir conserved basic region. Binding to calmodulin is regulated by calcium and phosphorylation ofthe IQ motif
Subcellular location : Cytoplasm. Nucleus. Note=Also nuclear upon binding to NR5A1 and treatment ofcells with TPA or forskolin
Developmental stage : Expressed in fetal tissues. More abundant in kidney
Sequence caution : Sequence=CAI12698.1; Type=Erroneous gene model prediction;
PDB structures from and Proteopedia : 1X57 (3D)
 
Secondary accessions : Q5T5T2 Q9UIM1Alternative splicing : 2 isoforms : O60869-1 O60869-2
Post-translational modifications:
Phosphorylated (by PKA and PKC)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_003783.1 NP_694880.1 ENSEMBL proteins: ENSP00000224073 ENSP00000360712 ENSP00000360711 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: EDF1 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for EDF1: Assays for EDF1:
Protein
Domains/ Families for EDF1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O60869 ProtoNet protein and cluster: O60869
1 Blocks protein family : IPB013729 Multiprotein bridging factor 1 UniProtKB/Swiss-Prot: EDF1_HUMAN, O60869 Domain : The IQ motif, which is involved in calmodulin binding, overlaps with the binding domain fornuclear receptors and transcription factors. Its phosphorylation probably allows a switch betweenthe two activities of the protein (By similarity) Similarity : Contains 1 HTH cro/C1-type DNA-binding domain
Gene Function for EDF1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
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RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
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Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_153200 Applied Biosystems Silencer ® siRNAs for EDF1 Sigma-Aldrich siRNA for EDF1 Sigma-Aldrich shRNA for EDF1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003792                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003792                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003792  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003792 UniProtKB/Swiss-Prot: EDF1_HUMAN, O60869 Function : Transcriptional coactivator stimulating NR5A1 and ligand-dependent NR1H3/LXRA and PPARGtranscriptional activities. Enhances the DNA-binding activity of ATF1, ATF2, CREB1 and NR5A1.Regulates nitric oxid synthase activity probably by sequestering calmodulin in the cytoplasm. Mayfunction in endothelial cells differentiation, hormone-induced cardiomyocytes hypertrophy andlipid metabolism Induction : Down-regulated by HIV type I protein TAT or phorbol ester (TPA) treatment in endothelialcells (at mRNA and protein levels)
5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for EDF1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for EDF1 (Your Favorite Gene powered by Ingenuity) (see all 7
) Gene Network CentralTM Interacting Genes and Proteins Network for EDF1 5/81 Interacting proteins for EDF1 (O60869 1 ENSP00000224073 3 ) via UniProtKB, MINT, and/or STRING (see all 81
)About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for EDF1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for EDF1 2 Novoseek chemical compound relationships for EDF1 gene
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Transcripts for EDF1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_153200 Sigma-Aldrich siRNA for EDF1 Sigma-Aldrich shRNA for EDF1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003792 NM_153200
REFSEQ mRNAs for EDF1 gene (2 alternative transcripts): NM_003792.2 NM_153200.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003792 NM_153200
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003792                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003792                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003792  
Additional cDNA sequence: AB002282.1 AB002283.2 BC015500.1 BT009863.1 CR541914.1
14 DOTS entries : DT.100885943 DT.455909 DT.92440628 DT.95366227 DT.95366228 DT.100802225 DT.92440626 DT.95366237 DT.100058114 DT.121158512 DT.121158524 DT.95366229 DT.95366234 DT.95366240
24/360 AceView cDNA sequences (see all 360
):CA448839 CD556359 BI755767 BM760376 AA325418 AI298210 BM760564 AI879231 F25098 BM968045 BC015500 BG575401 BU625866 BM914947 BG743000 BF000007 BM423594 NM_153200 BM713611 AJ707618 AW629804 BE794038 BM842802 BI766778
highest scoring ESTs for EDF1 :AA927726 AB002282 AB002283 AW629804 BC015500 BE019633 BE019665 BE787775 BF342048 BG325691
Unigene Cluster for EDF1: Endothelial differentiation-related factor 1 Hs.174050 [show with all ESTs ] Unigene Representative Sequence: BE791300 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for EDF1 ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 SP1 :             -   -     SP2 :             -       SP3 :                  
About this scheme ECgene alternative splicing isoforms for EDF1 3 Ensembl transcripts including schematic representations : ENST00000224073
ENST00000371649
ENST00000371648
Expression for EDF1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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EDF1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for EDF1 1 / 2 / 3
4 probe-sets matching EDF1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ACAGGGTGACSOURCE GeneReport for Unigene cluster: Hs.174050 UniProtKB/Swiss-Prot: EDF1_HUMAN, O60869 Tissue specificity : Expressed in brain, liver, lung, kidney and heart (at protein level).Ubiquitously expressed. More abundant in heart, pancreas, liver, intestine and adipose tissues
Orthologs for EDF1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for EDF1 gene from 5/20 species (see all 20
)
About this table Species with no ortholog for EDF1 ENSEMBL Gene Tree for EDF1 Paralogs for EDF1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for EDF1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for EDF1 (up to first 250kb)
Disorders & Mutations for EDF1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 605107
Medical News for EDF1 (Possibly Related Articles in
Doctor's Guide )
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Publications for EDF1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/27 PubMed articles for EDF1 gene (see all 27
): The dual role of endothelial differentiation-related factor-1 in the cytosol and nucleus: modulation by protein kinase A. (PubMed id 15112053) 1, 2, 3, 4 Ballabio E....Maier J.A. (2004) EDF-1, a novel gene product down-regulated in human endothelial cell differentiation. (PubMed id 9813014) 1, 2, 3, 4 Dragoni I.... Maier J.A.M. (1998) Interaction between endothelial differentiation-related factor-1 and calmodulin in vitro and in vivo. (PubMed id 10816571) 1, 3, 4 Mariotti M.... Maier J.A.M. (2000) The role of human MBF1 as a transcriptional coactivator. (PubMed id 10567391) 1, 3, 4 Kabe Y.... Handa H. (1999) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 3, 4 Humphray S.J.... Dunham I. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Multiprotein bridging factor-1 (MBF-1) is a cofactor for nuclear receptors that regulate lipid metabolism. (PubMed id 12040021) 3, 4 Brendel C.... Auwerx J. (2002) Identification of the core domain and the secondary structure of the transcriptional coactivator MBF1. (PubMed id 10469174) 1, 3 Ozaki J....Shirakawa M. (1999) Characterization of the human EDF-1 minimal promoter: involvement of NFY and Sp1 in the regulation of basal transcription. (PubMed id 16567061) 1, 3 Bolognese F....Maier J.A. (2006) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 3 Strausberg R.L....Marra M.A. (2002)
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Genome Databases showing EDF1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing EDF1
(According to HUGE )
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Specialized Databases showing EDF1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Recombinant Proteins (EDF1 ) Antibodies (EDF1 )
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