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Aliases for EDEM2 Gene

Aliases for EDEM2 Gene

  • ER Degradation Enhancer, Mannosidase Alpha-Like 2 2 3
  • C20orf31 3 4
  • C20orf49 3 4
  • ER Degradation-Enhancing-Mannosidase-Like Protein 2 3
  • ER Degradation-Enhancing Alpha-Mannosidase-Like 2 3
  • Chromosome 20 Open Reading Frame 31 2
  • BA4204.1 3

External Ids for EDEM2 Gene

Previous HGNC Symbols for EDEM2 Gene

  • C20orf49
  • C20orf31

Previous GeneCards Identifiers for EDEM2 Gene

  • GC20M033167
  • GC20M033703
  • GC20M030481

Summaries for EDEM2 Gene

Entrez Gene Summary for EDEM2 Gene

  • In the endoplasmic reticulum (ER), misfolded proteins are retrotranslocated to the cytosol and degraded by the proteasome in a process known as ER-associated degradation (ERAD). EDEM2 belongs to a family of proteins involved in ERAD of glycoproteins (Mast et al., 2005 [PubMed 15537790]).[supplied by OMIM, Mar 2008]

GeneCards Summary for EDEM2 Gene

EDEM2 (ER Degradation Enhancer, Mannosidase Alpha-Like 2) is a Protein Coding gene. Among its related pathways are Transport to the Golgi and subsequent modification and Protein processing in endoplasmic reticulum. GO annotations related to this gene include calcium ion binding and mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. An important paralog of this gene is EDEM3.

UniProtKB/Swiss-Prot for EDEM2 Gene

  • Initiates the endoplasmic reticulum-associated degradation (ERAD) that targets misfolded glycoproteins for degradation in an N-glycan-dependent manner. Catalyzes the first mannose trimming step, from Man9GlcNAc2 to Man8GlcNAc2 (PubMed:25092655). Extracts misfolded glycoproteins, but not glycoproteins undergoing productive folding, from the calnexin cycle.

Gene Wiki entry for EDEM2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EDEM2 Gene

Genomics for EDEM2 Gene

Regulatory Elements for EDEM2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for EDEM2 Gene

Chromosome:
20
Start:
35,115,357 bp from pter
End:
35,147,364 bp from pter
Size:
32,008 bases
Orientation:
Minus strand

Genomic View for EDEM2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for EDEM2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EDEM2 Gene

Proteins for EDEM2 Gene

  • Protein details for EDEM2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BV94-EDEM2_HUMAN
    Recommended name:
    ER degradation-enhancing alpha-mannosidase-like protein 2
    Protein Accession:
    Q9BV94
    Secondary Accessions:
    • B4DTG9
    • Q6GU33
    • Q6IA89
    • Q6UWZ4
    • Q9H4U0
    • Q9H886
    • Q9NTL9
    • Q9NVE6

    Protein attributes for EDEM2 Gene

    Size:
    578 amino acids
    Molecular mass:
    64753 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for EDEM2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for EDEM2 Gene

Proteomics data for EDEM2 Gene at MOPED

Post-translational modifications for EDEM2 Gene

Other Protein References for EDEM2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for EDEM2 Gene

Domains & Families for EDEM2 Gene

Protein Domains for EDEM2 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BV94

UniProtKB/Swiss-Prot:

EDEM2_HUMAN :
  • Belongs to the glycosyl hydrolase 47 family.
Family:
  • Belongs to the glycosyl hydrolase 47 family.
genes like me logo Genes that share domains with EDEM2: view

No data available for Gene Families for EDEM2 Gene

Function for EDEM2 Gene

Molecular function for EDEM2 Gene

UniProtKB/Swiss-Prot Function:
Initiates the endoplasmic reticulum-associated degradation (ERAD) that targets misfolded glycoproteins for degradation in an N-glycan-dependent manner. Catalyzes the first mannose trimming step, from Man9GlcNAc2 to Man8GlcNAc2 (PubMed:25092655). Extracts misfolded glycoproteins, but not glycoproteins undergoing productive folding, from the calnexin cycle.
UniProtKB/Swiss-Prot Induction:
Up-regulated by the unfolded protein response (UPR) via the XBP1 transcription factor.

Gene Ontology (GO) - Molecular Function for EDEM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001948 glycoprotein binding IEA --
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IMP 25092655
GO:0005509 calcium ion binding IEA --
genes like me logo Genes that share ontologies with EDEM2: view

Phenotypes for EDEM2 Gene

genes like me logo Genes that share phenotypes with EDEM2: view

Animal Model Products

miRNA for EDEM2 Gene

miRTarBase miRNAs that target EDEM2

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for EDEM2

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for EDEM2 Gene

Localization for EDEM2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for EDEM2 Gene

Secreted. Endoplasmic reticulum lumen.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for EDEM2 Gene COMPARTMENTS Subcellular localization image for EDEM2 gene
Compartment Confidence
endoplasmic reticulum 5
extracellular 5

Gene Ontology (GO) - Cellular Components for EDEM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005783 endoplasmic reticulum IDA 15537790
GO:0005788 endoplasmic reticulum lumen IEA --
GO:0005789 endoplasmic reticulum membrane --
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with EDEM2: view

Pathways & Interactions for EDEM2 Gene

genes like me logo Genes that share pathways with EDEM2: view

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Interacting Proteins for EDEM2 Gene

Gene Ontology (GO) - Biological Process for EDEM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006457 protein folding TAS --
GO:0006491 N-glycan processing IBA --
GO:0018279 protein N-linked glycosylation via asparagine TAS --
GO:0030433 ER-associated ubiquitin-dependent protein catabolic process IBA --
GO:0030968 endoplasmic reticulum unfolded protein response IBA --
genes like me logo Genes that share ontologies with EDEM2: view

No data available for SIGNOR curated interactions for EDEM2 Gene

Drugs & Compounds for EDEM2 Gene

No Compound Related Data Available

Transcripts for EDEM2 Gene

Unigene Clusters for EDEM2 Gene

ER degradation enhancer, mannosidase alpha-like 2:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for EDEM2

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for EDEM2 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c ^ 10a · 10b · 10c ^ 11 ^ 12
SP1: - - - -
SP2: - - - - -
SP3: - - -
SP4: - - -
SP5: - - - - - - - -
SP6: - - - - - - -
SP7: - - - - -
SP8: - - - - -
SP9: - -
SP10: -
SP11: - - - - - -
SP12:

Relevant External Links for EDEM2 Gene

GeneLoc Exon Structure for
EDEM2
ECgene alternative splicing isoforms for
EDEM2

Expression for EDEM2 Gene

mRNA expression in normal human tissues for EDEM2 Gene

mRNA differential expression in normal tissues according to GTEx for EDEM2 Gene

This gene is overexpressed in Whole Blood (x4.9).

Protein differential expression in normal tissues from HIPED for EDEM2 Gene

This gene is overexpressed in Bone (42.1), Pancreas (12.3), and Placenta (10.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for EDEM2 Gene



SOURCE GeneReport for Unigene cluster for EDEM2 Gene Hs.720177

mRNA Expression by UniProt/SwissProt for EDEM2 Gene

Q9BV94-EDEM2_HUMAN
Tissue specificity: Expressed ubiquitously in all tissues tested with slightly higher levels detected in small intestine and peripheral blood leukocytes and weakest levels in brain and skeletal muscle.
genes like me logo Genes that share expression patterns with EDEM2: view

Protein tissue co-expression partners for EDEM2 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for EDEM2 Gene

Orthologs for EDEM2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for EDEM2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia EDEM2 35
  • 91.52 (n)
  • 96.37 (a)
EDEM2 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia EDEM2 35
  • 91.97 (n)
  • 96.36 (a)
EDEM2 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Edem2 35
  • 88.83 (n)
  • 94.1 (a)
Edem2 16
Edem2 36
  • 94 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia EDEM2 35
  • 99.54 (n)
  • 99.65 (a)
EDEM2 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Edem2 35
  • 89.76 (n)
  • 94.62 (a)
oppossum
(Monodelphis domestica)
Mammalia EDEM2 36
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia EDEM2 36
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves EDEM2 35
  • 75.5 (n)
  • 83.04 (a)
EDEM2 36
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia EDEM2 36
  • 83 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia edem2 35
  • 72.65 (n)
  • 79.85 (a)
zebrafish
(Danio rerio)
Actinopterygii 4931415M17 35
edem2 35
  • 69.83 (n)
  • 75 (a)
edem2 36
  • 72 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012463 35
  • 58.45 (n)
  • 64.69 (a)
fruit fly
(Drosophila melanogaster)
Insecta Edem1 35
  • 59.5 (n)
  • 57.17 (a)
Edem1 36
  • 31 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F10C2.5 35
  • 56.59 (n)
  • 57.67 (a)
F10C2.5 36
  • 37 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MNL1 36
  • 23 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G43710 35
  • 52.95 (n)
  • 49.35 (a)
rice
(Oryza sativa)
Liliopsida Os.17630 35
Os01g0773600 35
  • 54.36 (n)
  • 49.01 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 50 (a)
OneToOne
Species with no ortholog for EDEM2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for EDEM2 Gene

ENSEMBL:
Gene Tree for EDEM2 (if available)
TreeFam:
Gene Tree for EDEM2 (if available)

Paralogs for EDEM2 Gene

Paralogs for EDEM2 Gene

(2) SIMAP similar genes for EDEM2 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with EDEM2: view

Variants for EDEM2 Gene

Sequence variations from dbSNP and Humsavar for EDEM2 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs614799 -- 35,139,318(+) gcact(C/T)cagcc intron-variant
rs633784 -- 35,138,520(+) TAATG(A/G)TGGTT intron-variant
rs647515 -- 35,139,247(+) tggga(A/G)gctga intron-variant
rs666210 -- 35,136,007(+) CTCTC(C/T)GGGCC intron-variant
rs927442 -- 35,121,068(+) gtttc(A/G)tggaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EDEM2 Gene

Variant ID Type Subtype PubMed ID
esv2480993 CNV Deletion 19546169
esv1987108 CNV Deletion 18987734
esv2658915 CNV Deletion 23128226

Variation tolerance for EDEM2 Gene

Residual Variation Intolerance Score: 28.74% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.96; 59.84% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for EDEM2 Gene

HapMap Linkage Disequilibrium report
EDEM2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EDEM2 Gene

Disorders for EDEM2 Gene

Relevant External Links for EDEM2

Genetic Association Database (GAD)
EDEM2
Human Genome Epidemiology (HuGE) Navigator
EDEM2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EDEM2
genes like me logo Genes that share disorders with EDEM2: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EDEM2 Gene

Publications for EDEM2 Gene

  1. A novel stress-induced EDEM variant regulating endoplasmic reticulum- associated glycoprotein degradation. (PMID: 15579471) Olivari S. … Molinari M. (J. Biol. Chem. 2005) 2 23 67
  2. Human EDEM2, a novel homolog of family 47 glycosidases, is involved in ER-associated degradation of glycoproteins. (PMID: 15537790) Mast S.W. … Moremen K.W. (Glycobiology 2005) 2 67
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  4. EDEM2 initiates mammalian glycoprotein ERAD by catalyzing the first mannose trimming step. (PMID: 25092655) Ninagawa S. … Mori K. (J. Cell Biol. 2014) 67
  5. EDEM2 and OS-9 are required for ER-associated degradation of non-glycosylated sonic hedgehog. (PMID: 24910992) Tang H.Y. … Chen X. (PLoS ONE 2014) 67

Products for EDEM2 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • Pathway & Disease-focused RT² Profiler PCR Arrays
  • QIAGEN qRT-PCR Assays for microRNAs that regulate EDEM2
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for EDEM2
    • Block miRNA regulation of EDEM2 using miScript Target Protectors

    Sources for EDEM2 Gene

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