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Aliases for EDDM13 Gene

Aliases for EDDM13 Gene

  • Epididymal Protein 13 2 3
  • AC006116.20 5

External Ids for EDDM13 Gene

Summaries for EDDM13 Gene

GeneCards Summary for EDDM13 Gene

EDDM13 (Epididymal Protein 13) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EDDM13 Gene

Genomics for EDDM13 Gene

Regulatory Elements for EDDM13 Gene

Enhancers for EDDM13 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G056403 1.1 ENCODE 21.4 +139.9 139890 2.0 HDGF CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF416 ZNF143 ZNF582-AS1 ZFP28 FIZ1 ZNF543 ZNF471 ZNF264 ZNF542P ZNF470 U2AF2 ENSG00000269696
GH19G056392 1.1 ENCODE 21.4 +129.2 129197 1.5 CREB3L1 ARNT SIN3A ZNF2 YY1 ZNF766 ZNF416 ZNF143 ZNF207 KLF13 ZNF582-AS1 FIZ1 ZNF543 ZNF471 ZNF264 ZNF542P ZNF470 U2AF2 ENSG00000269696 ZFP28
GH19G055519 1.6 FANTOM5 Ensembl ENCODE 13.3 -744.1 -744051 1.0 HDGF ATF1 ZNF493 ZNF133 YBX1 GLI4 ZNF416 FOS ZNF548 SP3 FIZ1 ZNF471 NAT14 ZNF580 ZNF667 ZNF582-AS1 ZNF667-AS1 ZNF542P U2AF2 ZNF583
GH19G055405 1.4 FANTOM5 ENCODE 13.3 -856.8 -856835 3.7 HDGF PKNOX1 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 RPL28 NAT14 EDDM13 ZNF581 U2AF2 ZNF582-AS1 ENSG00000269873 ZNF580 FIZ1 KMT5C
GH19G055503 1.3 Ensembl ENCODE 13.3 -760.3 -760292 1.6 PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 CBX5 ZNF416 FIZ1 ZNF667 ZNF667-AS1 ZNF582-AS1 NAT14 ZNF542P ZNF583 U2AF2 LOC729999 ZNF580
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EDDM13 on UCSC Golden Path with GeneCards custom track

Genomic Location for EDDM13 Gene

Chromosome:
19
Start:
56,264,260 bp from pter
End:
56,310,454 bp from pter
Size:
46,195 bases
Orientation:
Plus strand

Genomic View for EDDM13 Gene

Genes around EDDM13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EDDM13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EDDM13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EDDM13 Gene

Proteins for EDDM13 Gene

  • Protein details for EDDM13 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTR0
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A1B0GTR0

    Protein attributes for EDDM13 Gene

    Size:
    161 amino acids
    Molecular mass:
    18455 Da
    Quaternary structure:
    No Data Available
  • Protein details for EDDM13 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GU87
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A1B0GU87

    Protein attributes for EDDM13 Gene

    Size:
    39 amino acids
    Molecular mass:
    4696 Da
    Quaternary structure:
    No Data Available
  • Protein details for EDDM13 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GUE6
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A1B0GUE6

    Protein attributes for EDDM13 Gene

    Size:
    39 amino acids
    Molecular mass:
    4418 Da
    Quaternary structure:
    No Data Available

neXtProt entry for EDDM13 Gene

Post-translational modifications for EDDM13 Gene

No Post-translational modifications

Other Protein References for EDDM13 Gene

No data available for DME Specific Peptides for EDDM13 Gene

Domains & Families for EDDM13 Gene

Protein Domains for EDDM13 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with EDDM13: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EDDM13 Gene

Function for EDDM13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EDDM13 Gene

Localization for EDDM13 Gene

Gene Ontology (GO) - Cellular Components for EDDM13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with EDDM13: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for EDDM13 Gene

Pathways & Interactions for EDDM13 Gene

SuperPathways for EDDM13 Gene

No Data Available

Interacting Proteins for EDDM13 Gene

Gene Ontology (GO) - Biological Process for EDDM13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EDDM13 Gene

Drugs & Compounds for EDDM13 Gene

No Compound Related Data Available

Transcripts for EDDM13 Gene

mRNA/cDNA for EDDM13 Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EDDM13 Gene

No ASD Table

Relevant External Links for EDDM13 Gene

GeneLoc Exon Structure for
EDDM13
ECgene alternative splicing isoforms for
EDDM13

Expression for EDDM13 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EDDM13 Gene

Orthologs for EDDM13 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for EDDM13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC101057406 34
  • 91.75 (n)
mouse
(Mus musculus)
Mammalia Gm6792 35
  • 34 (a)
OneToOne
Species where no ortholog for EDDM13 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for EDDM13 Gene

ENSEMBL:
Gene Tree for EDDM13 (if available)
TreeFam:
Gene Tree for EDDM13 (if available)

Paralogs for EDDM13 Gene

No data available for Paralogs for EDDM13 Gene

Variants for EDDM13 Gene

Sequence variations from dbSNP and Humsavar for EDDM13 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000450683 -- 56,290,952(+) AATGT(A/G)GAACA intron-variant
rs1000605677 -- 56,285,463(+) TTTAC(C/T)TCTTT intron-variant, upstream-variant-2KB
rs1000625782 -- 56,282,523(+) CTCTT(C/T)CCCTT intron-variant, upstream-variant-2KB
rs1000630202 -- 56,285,298(+) AAAAT(G/T)AAAGT intron-variant, upstream-variant-2KB
rs1001263011 -- 56,287,999(+) GTCTC(C/T)CATTT intron-variant

Relevant External Links for EDDM13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EDDM13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EDDM13 Gene

Disorders for EDDM13 Gene

No disorders were found for EDDM13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for EDDM13 Gene

Publications for EDDM13 Gene

No publications were found for EDDM13 Gene.

Products for EDDM13 Gene

Sources for EDDM13 Gene

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