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Aliases for EDDM13 Gene

Aliases for EDDM13 Gene

  • Epididymal Protein 13 2 3 5

External Ids for EDDM13 Gene

Summaries for EDDM13 Gene

GeneCards Summary for EDDM13 Gene

EDDM13 (Epididymal Protein 13) is a Protein Coding gene.

Additional gene information for EDDM13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EDDM13 Gene

Genomics for EDDM13 Gene

GeneHancer (GH) Regulatory Elements for EDDM13 Gene

Promoters and enhancers for EDDM13 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I055405 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 13.3 -856.8 -856834 3.7 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 UBE2S U2AF2 ZNF628 LENG8 ENSG00000267523 ZNF581 LENG8-AS1 RPL28 ENSG00000235681 ENSG00000267096
GH19I056392 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 13.4 +129.3 129306 1.7 ARNT SIN3A ZNF2 YY1 POLR2B ZNF766 ZNF416 ZNF207 ZNF143 SP3 ZNF582-AS1 ZNF582 GC19P056396 PIR50744 FIZ1 ZNF471 ZNF542P ZNF304 ZNF470 ZNF835
GH19I056403 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 13.4 +139.9 139889 2 HDGF ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 ZNF416 ZNF207 ZNF583 ZNF582-AS1 ZNF582 ZFP28 ZNF470 ZNF471 FIZ1 ZNF460-AS1 ENSG00000269696 ZNF542P
GH19I056594 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 13.3 +331.2 331180 1.4 HDGF PKNOX1 ZNF133 ARID4B SIN3A FEZF1 YBX1 GLI4 ZNF48 YY1 ZNF71 U2AF2 ZNF17 ZNF543 ZNF549 ZNF264 ZNF773 ENSG00000269696 ZNF550 ZFP28
GH19I055519 Enhancer 1.4 FANTOM5 Ensembl ENCODE 13.3 -744.1 -744051 1 HDGF ATF1 ZNF493 ZNF133 YBX1 GLI4 ZNF416 ZNF548 FOS ATF7 U2AF2 ZNF471 FIZ1 ZNF582 ZNF581 ZNF580 SSC5D ENSG00000267523 NAT14 ZNF667
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EDDM13 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EDDM13 Gene

Genomic Locations for EDDM13 Gene
chr19:56,264,260-56,310,454
(GRCh38/hg38)
Size:
46,195 bases
Orientation:
Plus strand
chr19:56,784,138-56,822,213
(GRCh37/hg19)

Genomic View for EDDM13 Gene

Genes around EDDM13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EDDM13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EDDM13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EDDM13 Gene

Proteins for EDDM13 Gene

  • Protein details for EDDM13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GTR0-EDD13_HUMAN
    Recommended name:
    Epididymal protein 13
    Protein Accession:
    A0A1B0GTR0

    Protein attributes for EDDM13 Gene

    Size:
    161 amino acids
    Molecular mass:
    18455 Da
    Quaternary structure:
    No Data Available

neXtProt entry for EDDM13 Gene

Post-translational modifications for EDDM13 Gene

No Post-translational modifications

Other Protein References for EDDM13 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for EDDM13 Gene

Domains & Families for EDDM13 Gene

Protein Domains for EDDM13 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with EDDM13: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EDDM13 Gene

Function for EDDM13 Gene

Phenotypes From GWAS Catalog for EDDM13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EDDM13 Gene

Localization for EDDM13 Gene

Gene Ontology (GO) - Cellular Components for EDDM13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with EDDM13: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for EDDM13 Gene

Pathways & Interactions for EDDM13 Gene

SuperPathways for EDDM13 Gene

No Data Available

Interacting Proteins for EDDM13 Gene

Gene Ontology (GO) - Biological Process for EDDM13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EDDM13 Gene

Drugs & Compounds for EDDM13 Gene

No Compound Related Data Available

Transcripts for EDDM13 Gene

mRNA/cDNA for EDDM13 Gene

(1) REFSEQ mRNAs :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EDDM13 Gene

No ASD Table

Relevant External Links for EDDM13 Gene

GeneLoc Exon Structure for
EDDM13
ECgene alternative splicing isoforms for
EDDM13

Expression for EDDM13 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EDDM13 Gene

Orthologs for EDDM13 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for EDDM13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC101057406 33
  • 91.75 (n)
mouse
(Mus musculus)
Mammalia Gm6792 34
  • 34 (a)
OneToOne
Species where no ortholog for EDDM13 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for EDDM13 Gene

ENSEMBL:
Gene Tree for EDDM13 (if available)
TreeFam:
Gene Tree for EDDM13 (if available)

Paralogs for EDDM13 Gene

No data available for Paralogs for EDDM13 Gene

Variants for EDDM13 Gene

Sequence variations from dbSNP and Humsavar for EDDM13 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000450683 -- 56,290,952(+) A/G intron_variant
rs1000605677 -- 56,285,463(+) C/T intron_variant
rs1000625782 -- 56,282,523(+) T/C upstream_transcript_variant
rs1000630202 -- 56,285,298(+) G/T intron_variant
rs1001263011 -- 56,287,999(+) T/C intron_variant

Additional Variant Information for EDDM13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EDDM13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EDDM13 Gene

Disorders for EDDM13 Gene

No disorders were found for EDDM13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for EDDM13 Gene

Publications for EDDM13 Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4 58
  2. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3 58

Products for EDDM13 Gene

Sources for EDDM13 Gene

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