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Aliases & Descriptions for EDA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ED1 2 , 3 , 5 ED1-A1 1 , 2 ED1-A2 1 , 2 EDA1 1 , 2 EDA2 2 , 3 HED 1 , 2 , 5 OTTHUMP00000023461 2 OTTHUMP00000023463 2 XHED 1 , 2 XLHED 1 , 2
Descriptions EDA protein 3 Ectodermal dysplasia protein 3 X-linked anhidroitic ectodermal dysplasia protein 2 ectodermal dysplasia 1, anhidrotic 1 ectodysplasin A 2
Search outside databases for aliases for EDA genePrevious GC identifer: GC0XP068618
Summaries for EDA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for EDA : The protein encoded by this gene is a type II membrane protein that can be cleaved by furin toproduce a secreted form. The encoded protein, which belongs to the tumor necrosis factor family,acts as a homotrimer and may be involved in cell-cell signaling during the development ofectodermal organs. Defects in this gene are a cause of ectodermal dysplasia, anhidrotic, which isalso known as X-linked hypohidrotic ectodermal dysplasia. Several transcript variants encodingmany different isoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: EDA_HUMAN, Q92838 Function : Seems to be involved in epithelial-mesenchymal signaling during morphogenesis ofectodermal organs. Isoform A1 binds only to the receptor EDAR, while isoform A2 binds exclusivelyto the receptor XEDAR
Gene Wiki entry for EDA
Genomic Location for EDA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the EDA gene Entrez Gene cytogenetic band: Xq12-q13.1 Ensembl cytogenetic band: Xq13.1 HGNC cytogenetic band: Xq12-q13.1 EDA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XP068752:
(about GC identifiers )
Start:
68,752,636 bp from pter
End:
69,176,047 bp from pter
Size:
423,412 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000023.9 NT_011669.16 Proteins for EDA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: EDA_HUMAN, Q92838 (See
protein sequence )Recommended Name: Ectodysplasin-A Size : 391 amino acids; 41294 Da
Subunit : Homotrimer. The homotrimers may then dimerize and form higher order oligomers
Subcellular location : Cell membrane; Single-pass type II membrane protein
Subcellular location : Ectodysplasin-A, secreted form: Secreted
PDB structure from and Proteopedia : 1RJ7 (3D)
 1RJ8 (3D)
 
Secondary accessions : A0AUZ2 A2A337 O75910 Q5JS00 Q5JUM7 Q9UP77 Q9Y6L0 Q9Y6L1 Q9Y6L2 Q9Y6L3 Q9Y6L4Alternative splicing : 8 isoforms : Q92838-1 Q92838-2 Q92838-3 Q92838-4 Q92838-5 Q92838-6 Q92838-7 Q92838-8 (Additional isoforms seem to exist)
Post-translational modifications:
N-glycosylated1
Processing by furin produces a secreted form1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (6 alternative transcripts):
NP_001005609.1 NP_001005610.1 NP_001005611.1 NP_001005612.1 NP_001005615.1 NP_001390.1 ENSEMBL proteins: ENSP00000363680 ENSP00000363681 ENSP00000379324 ENSP00000340611 ENSP00000363674 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for EDA: Assays for EDA:
Protein
Domains/ Families for EDA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q92838 ProtoNet protein and cluster: Q92838
2 Blocks protein families : IPB006052 Tumor Necrosis Factor IPB008160 Collagen triple helix repeat UniProtKB/Swiss-Prot: EDA_HUMAN, Q92838 Similarity : Belongs to the tumor necrosis factor familySimilarity : Contains 1 collagen-like domain
Gene Function for EDA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 8 ): NM_001399 Applied Biosystems Silencer ® siRNAs for EDA Sigma-Aldrich siRNA and siRNA Panels for EDA Sigma-Aldrich shRNA for EDA Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 6 ): NM_001005609                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 6 ): NM_001005609                                  untagged cDNA clones in CMV expression vector (see all 8 ): NM_001005609  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001399 UniProtKB/Swiss-Prot: EDA_HUMAN, Q92838 Function : Seems to be involved in epithelial-mesenchymal signaling during morphogenesis ofectodermal organs. Isoform A1 binds only to the receptor EDAR, while isoform A2 binds exclusivelyto the receptor XEDAR
14 MGI mutant phenotypes (inferred from 20 alleles ) (MGI details for Eda) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for EDA
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for EDA 1 Interacting protein for EDA (Q92838 1 ) via UniProtKB, MINT, and/or STRING About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
About this table
Drugs & Compounds for EDA (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for EDA
Transcripts for EDA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 8 ): NM_001399 Sigma-Aldrich siRNA and siRNA Panels for EDA Sigma-Aldrich shRNA for EDA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001005609 NM_001005610 NM_001005611 NM_001005612 NM_001005615 NM_001399
REFSEQ mRNAs for EDA gene (6 alternative transcripts): NM_001005609.1 NM_001005610.1 NM_001005611.1 NM_001005612.1 NM_001005615.1 NM_001399.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001005609 NM_001005610 NM_001005611 NM_001005612 NM_001005615 NM_001399
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 6 ): NM_001005609                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 6 ): NM_001005609                                  untagged cDNA clones in CMV expression vector (see all 8 ): NM_001005609  
Additional cDNA sequence: AF040628.1 AF060999.1 AF061189.1 AF061190.1 AF061191.1 AF061192.1 AF061193.1 AF061194.1 AK311532.1 BC126143.1 BC144049.1 BC144051.1 U59228.1
7 DOTS entries : DT.206235 DT.92324381 DT.121314494 DT.206070 DT.91759198 DT.91759200 DT.92009460
24/33 AceView cDNA sequences (see all 33
):BQ004154 BU185670 BU681223 AI015138 BU608133 AA363334 BQ008767 BQ682012 BQ676905 BU168874 BF935871 AF060999 BF002957 NM_001399 BE159499 BE892420 BU162989 AF061192 AF061193 AA879442 AW473357 AF040628 BQ422683 AA497125
highest scoring ESTs for EDA :AF040628 AA363334 AA497125 AI015138 AI689443 AW473357 AW959387 BE159499 BE708154 BE892420
Unigene Cluster for EDA: Ectodysplasin A Hs.105407 [show with all ESTs ] Unigene Representative Sequence: AF040628 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for EDA ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 SP1 :   -         SP2 :     -   -     SP3 :   -   -      
About this scheme ECgene alternative splicing isoforms for EDA 5 Ensembl transcripts including schematic representations : ENST00000374552
ENST00000374553
ENST00000396002
ENST00000338901
ENST00000374548
Expression for EDA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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EDA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for EDA 1 / 2 / 3
14 probe-sets matching EDA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.105407 Expression variation in blood from EXPOLDB for EDA
UniProtKB/Swiss-Prot: EDA_HUMAN, Q92838 Tissue specificity : Not abundant; expressed in specific cell types of ectodermal (but notmesodermal) origin of keratinocytes, hair follicles, sweat glands. Also in adult heart, liver,muscle, pancreas, prostate, fetal liver, uterus, small intestine and umbilical chord
Orthologs for EDA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for EDA gene from 5/6 species (see all 6
)
About this table Species with no ortholog for EDA ENSEMBL Gene Tree for EDA Paralogs for EDA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for EDA gene COL17A1 2
SNPs/Variants for EDA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for EDA (up to first 250kb)
Disorders & Mutations for EDA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 300451 disorders : 305100 300606 UniProtKB/Swiss-Prot: EDA_HUMAN, Q92838
Defects in EDA are the cause of ectodermal dysplasia, type 1 (ED1) [MIM:305100]; alsoknown as Christ-Siemens-Touraine syndrome or X-linked hypohidrotic ectodermal dysplasia (XLHED).Ectodermal dysplasia defines a heterogeneous group of disorders due to abnormal development of twoor more ectodermal structures. ED1 is a disease characterized by sparse hair (atrichosis orhypotrichosis), abnormal or missing teeth and the inability to sweat due to the absence of sweatglands. ED1 is the most common form of over 150 clinically distinct ectodermal dysplasias Defects in EDA are a cause of hypodontia [MIM:300606]. Hypodontia is agenesis of two ormore permanent teeth without associated systemic disorders. Hypodontia due to EDA defects is anX-linked recessive disorder. Affected individuals have normal hair, skin, and nails, but lackprimary and permanent teeth
7 Novoseek disease relationships for EDA gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
ectodermal dysplasia, hypohidrotic
98.44
67
12673367 (3), 18666859 (3), 12021844 (3), 17686277 (2) (see all 37 )
ectodermal dysplasia
90.10
7
17371397 (1), 18510547 (1), 11751679 (1), 11035039 (1) (see all 6 )
hypodontia
89.33
19
19278982 (4), 18821982 (2), 18688569 (2), 17256800 (1) (see all 7 )
hypohidrosis
88.69
3
19127222 (1)
genetic disorder
51.24
1
11416205 (1)
necrosis
39.26
23
15294294 (2), 16547002 (1), 17371397 (1), 14699584 (1) (see all 13 )
tumors
4.46
20
15294294 (2), 16547002 (1), 17371397 (1), 14699584 (1) (see all 11 )
About this table GeneTests: EDA Hypohidrotic Ectodermal Dysplasia Human Gene Mutation Database : EDA
Medical News for EDA (Possibly Related Articles in
Doctor's Guide )
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--
Publications for EDA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/96 PubMed articles for EDA gene (see all 96
): X-linked anhidrotic (hypohidrotic) ectodermal dysplasia is caused by mutation in a novel transmembrane protein. (PubMed id 8696334) 2, 3, 4 Kere J.... Schlessinger D. (1996) Mutations within a furin consensus sequence block proteolytic release of ectodysplasin-A and cause X-linked hypohidrotic ectodermal dysplasia. (PubMed id 11416205) 1, 3, 4 Chen Y.... Morris N.P. (2001) The anhidrotic ectodermal dysplasia gene (EDA) undergoes alternative splicing and encodes ectodysplasin-A with deletion mutations in collagenous repeats. (PubMed id 9736768) 1, 3, 4 Bayes M.... Kere J. (1998) A novel missense mutation of the EDA gene in a Mongolian family with congenital hypodontia. (PubMed id 16583127) 1, 3, 4 Tao R.... He L. (2006) Mutational spectrum of the ED1 gene in X-linked hypohidrotic ectodermal dysplasia. (PubMed id 11378824) 1, 3, 4 Vincent M.-C.... Calvas P. (2001) A novel Gln358Glu mutation in ectodysplasin A associated with X-linked dominant incisor hypodontia. (PubMed id 17256800) 1, 3, 4 Tarpey P....Patel P.I. (2007) X-linked anhidrotic (hypohidrotic) ectodermal dysplasia caused by a novel mutation in EDA1 gene: 406T > G (Leu55Arg). (PubMed id 10469321) 1, 3, 4 Martinez F.... Prieto F. (1999) Scarcity of mutations detected in families with X linked hypohidrotic ectodermal dysplasia: diagnostic implications. (PubMed id 9507389) 1, 3, 4 Ferguson B.M....Zonana J. (1998) The DNA sequence of the human X chromosome. (PubMed id 15772651) 3, 4 Ross M.T.... Bentley D.R. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004)
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Genome Databases showing EDA
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing EDA
(According to HUGE )
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--
Specialized Databases showing EDA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for EDA (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for EDA:
Recombinant Proteins (EDA ) Antibodies (EDA )
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009